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Jonathan Eisen

@phylogenomics.bsky.social

31K followers 5.5K following 2.1K posts

Prof at #UCDavis Interests: evolution, ecology, function & phylogenomics of host-microbe/microbiome symbioses; #openscience; #birds; baseball; T1D Lab phylogenomics.me Pics jonathaneisen.smugmug.com Links linktr.ee/jonathaneisen TED go.ted.com/6WPm .. more

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Jonathan Andrew Eisen is an American evolutionary biologist, currently working at University of California, Davis. His academic research is in the fields of evolutionary biology, genomics and microbiology and he is the academic editor-in-chief of the open access journal PLOS Biology. .. more

Biology 43%

Environmental science 24%

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Jonathan Eisen @phylogenomics.bsky.social · Aug 31

Gratitude. Just made a little video while out for a walk on my birthday to express my gratitude to all the people and organizations that help protect and preserve the natural world and make it accessible. Thanks to all of you. #gratitude #nature #birds #hiking #birthday #california #yolobypass

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Reposted by Jonathan A. Eisen

Black Microbiologists Assoc (Black In Micro) @blackinmicro.bsky.social · 3h

#BlackInMicro's Research Symposium is coming this Wedensday. Swipe left to see who's presenting. Come hear from 25 Early Career researchers from around the globe 🌎

Pre-register to attend: tinyurl.com/BIMW25
Donate to Early Career scientists: tinyurl.com/GiveBiM (all links in bio)

Black in Micro Week 2025 Early Career Research Symposium held on October 15, 2025, from 9 AM to 12 PM EST. Presenters include Katelyn Nicole Ward, Larisa Chila Kiki, Mallory Evans, Savannah Nicole Lewis, Enycé Fairbanks, and Khadijat Oluwapelumi Adefaye. It features six research presentations by early career scientists from various universities, covering topics such as drug repositioning for fungal infections, bacteriophage adaptation to silver ions, inflammasome responses to LPS, NK cell dynamics in malaria, organoid modeling of bacterial toxins, and protein disorder in Hepatitis E virus.

Early Career Research Symposium featuring Aureliana Filomena Chambal Chilengue, Hassan Abbas, Nazik Elmekki, Immaculata Chika Ede, Audrey Randall, and Justin Durunyamunwu. Topics include tuberculosis transmission analysis using reference-free clustering, gut microbiota comparisons in ulcerative colitis, fitness determinants of Phocaeicola vulgatus, wound biofilm modeling, the role of Parabacteroides distasonis in type I diabetes, and microvascular modeling in dengue virus research.

Early Career Research Symposium showcasing presenters howcasing presenters Nadia Holness, Deus Kamya, Trinity Moore, Caitlin Wiafe-Kwakye, Drea Darby, and Teni Shosanya. Topics include the role of Staphylococcus aureus in skin inflammation, the impact of Candida albicans on oral epithelial cells, the role of Bacteroides thetaiotaomicron in gut inflammation, the effect of Enterococcus faecalis on colorectal cancer, the influence of Streptococcus pneumoniae on lung immunity, and the use of Escherichia coli in synthetic biology applications.

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Reposted by Dorothy Bishop, Jonathan A. Eisen, Tom Shakespeare , and 3 more Dorothy Bishop, Jonathan A. Eisen, Tom Shakespeare, David Merrett, Christian Fisch, Lorna Hughes

Hetan Shah @hetanshah.bsky.social · 14h

This is such a clever idea on taking kids to museums/galleries
www.theguardian.com/lifeandstyle...

Nadia from London has an idea that sounds such fun you'll be booking a day out asap.
"I've always loved museums," she says,
"but they can be overwhelming for children. For decades now, I've done something called 'playing postcards'
We do
the museum backwards, visiting the gift shop first. Each child gets to choose three postcards. Then they take it in turns to find that particular artwork in the museum and give us a little information about the piece from the details on the postcard, or from any gallery plaque. At the end of this treasure-hunt-style activity, we vote for our favourite in the cafe."

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Reposted by Jonathan A. Eisen, Nicola J. Cooper, Virginia Braun , and 10 more Jonathan A. Eisen, Nicola J. Cooper, Virginia Braun, John R. Hutchinson, Martin Paul Eve, Helen King, Lesley A. Hall, Martin Tomko, Rebecca Sear, Julia M. Wright, Urška Demšar, Christina Pagel, Hayley Bennett

Trish Greenhalgh @trishgreenhalgh.bsky.social · 19h

Well done Shafaq Aftab. When a reviewer stole her work and published it under his own name, she fought for a YEAR to get the journal to retract the paper. Just wondering why it took Wiley a YEAR to do this. 🧪 #academicsky

retractionwatch.com/2025/10/03/w...

Wiley retracts study stolen by reviewer, following Retraction Watch coverage

A Wiley journal has retracted a paper more than a year after a researcher reported the work was hers and had been stolen by a reviewer for another journal. As we reported in July, Shafaq Aftab, now…

retractionwatch.com

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Jonathan Eisen @phylogenomics.bsky.social · 20h

I did the exact same thing when I first tried sushi. Well, the swallowing part. Not the acid part.

Jonathan Eisen @phylogenomics.bsky.social · 20h

2111 days and counting.

Posted observations to iNaturalist.org every day for last 2111 days.

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Jonathan Eisen @phylogenomics.bsky.social · 21h

Maybe they don't like how fish taste

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Jonathan Eisen @phylogenomics.bsky.social · 21h

Great egret having a fishy snack.

Two pics. Zoomed out and zoomed in.

#birds

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Lynn Becker @cmgiulini.bsky.social · 22h

After spending 43 years in prison for a crime he didn't commit, evidence hidden by the prosecution reversed his conviction. Rather than finally enjoying freedom, ICE abducted him for deportation

Depraved.

www.miamiherald.com/news/local/i...

He was wrongfully imprisoned for 43 years. Moments after being released, ICE took him

Subramanyam “Subu” Vedam now faces deportation.

www.miamiherald.com

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Reposted by Jonathan A. Eisen, Simon Roux

Rob Edwards @linsalrob.bsky.social · 22h

🦠Join the legendary @viromegirl.bsky.social lab

Jobs in marine micro, virology & genomics
💻 Viral 'omics in seagrass
🧬 Marine microbial & bioinformatics
🧫 Vibrio phage + iron biogeochemistry
🎓 sea urchin–ciliate diseases

👉 www.marine.usf.edu/genomics/app...

#MarineVirology #Phagesky #Microbiome

Welcome to the Breitbart Lab - Genomics

We are modern virus hunters, using metagenomic sequencing to discover viruses in a wide range of environments and hosts. Have fun exploring the marvels of microbiology on this website!

marine.usf.edu

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Jonathan Eisen @phylogenomics.bsky.social · 1d

Nice - I want to hear it sometime

Reposted by Jonathan A. Eisen

James McGann @scienceish.bsky.social · 1d

Lazy Susan, but, like, literally

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Jonathan Eisen @phylogenomics.bsky.social · 1d

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Reposted by Shannon Vallor, Lisa W. Fazio, Nandita Sharma , and 36 more Shannon Vallor, Lisa W. Fazio, Nandita Sharma, Jonathan A. Eisen, Jocalyn Clark, Will Jennings, Jennifer A. Richeson, Julie L. Lockwood, Karen R. Lips, Joshua S. Weitz, Scott L. Greer, Steve Peers, Benjamin Mason Meier, Philip N. Cohen, Philip Nel, Daniel W. Drezner, Karen Benjamin Guzzo, Robert C. Richards, Alan Richardson, Silvia Secchi, Aaron Sojourner, Stacy D. VanDeveer, Margot C. Finn, Jason Lyall, Mark Rice, Kent Johnson, Brian Weatherson, Mary Jane Curry, Claire L. Adida, Larry W. Hunter, Emily Evans, Richard M. Carpiano, David S. Tanenhaus, Aviel Roshwald, Jae-Young Son, Olúfẹ́mi Táíwò, Timothy D. McBride, Melinda Baldwin, David Darmofal

Sheryl Gay Stolberg @sherylnyt.bsky.social · 1d

BREAKING: Friday night massacre underway at CDC. Doznes of "disease detectives," high-level scientists, entire Washington staff and editors of the MMWR (Morbidity and Mortality Weekly Report) have all been RIFed and received the following notice:

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Reposted by Jonathan A. Eisen, Ben Bond‐Lamberty, Silvia Secchi , and 2 more Jonathan A. Eisen, Ben Bond‐Lamberty, Silvia Secchi, Erin O’Donnell, Larry W. Hunter

Virginia Gewin @virginiagewin.bsky.social · 2d

Journalist here

I’m interested in talking to a federal agency scientist who was fired, then rehired. I can keep you anonymous. I’m on Signal ginnyg.04

Reposts are appreciated!