John Hodge
@jghodge.bsky.social
Post-doc at UIUC studying stomatal patterning. Botanist by training with interests broadly in evo-devo, mechanistic modeling, and genetics, particularly in relation to grasses and cereals. Opinions my own.
Reposted by John Hodge
💨🌿 REVIEW 💨🌿
Environmental factors such as wind and plant-specific traits including leaf size can be manipulated to alleviate limitations imposed on photosynthesis by low leaf boundary layer conductance - Dupont et al.
🔗 doi.org/10.1093/jxb/...
#PlantScience 🧪 @silverevialet.bsky.social
Environmental factors such as wind and plant-specific traits including leaf size can be manipulated to alleviate limitations imposed on photosynthesis by low leaf boundary layer conductance - Dupont et al.
🔗 doi.org/10.1093/jxb/...
#PlantScience 🧪 @silverevialet.bsky.social
![Fig. 3 (shortened, full legend in paper): Schematic representation of CO2 diffusion through the leaf boundary layer and into the chloroplast under different wind speeds. The cross-sections represent a leaf with a uniform boundary layer and show the diffusional path of CO2 from the ambient air to the stomatal aperture and then to the chloroplast, under two different wind conditions. The corresponding distribution of [CO2] is shown, as indicated in the key. (A) A low wind speed results in a relatively thick boundary layer where [CO2] decreases from 420 µmol mol−1 in the ambient air (
), to 350 µmol mol−1 in the air at the stomatal aperture (
), to 270 µmol mol−1 in the intercellular airspace (
).](https://cdn.bsky.app/img/feed_thumbnail/plain/did:plc:ggz22gcwkakll7efac23g33s/bafkreie7wx3nobvmntpmicqdlkfdu7ndc22bt45qlc64uunsqztz5my4oq@jpeg)
November 25, 2025 at 11:12 AM
💨🌿 REVIEW 💨🌿
Environmental factors such as wind and plant-specific traits including leaf size can be manipulated to alleviate limitations imposed on photosynthesis by low leaf boundary layer conductance - Dupont et al.
🔗 doi.org/10.1093/jxb/...
#PlantScience 🧪 @silverevialet.bsky.social
Environmental factors such as wind and plant-specific traits including leaf size can be manipulated to alleviate limitations imposed on photosynthesis by low leaf boundary layer conductance - Dupont et al.
🔗 doi.org/10.1093/jxb/...
#PlantScience 🧪 @silverevialet.bsky.social
Reposted by John Hodge
CALL FOR PAPERS 🌿 DEADLINE NOV 30
Submit your proposal for the #AppsPlantSci special issue: “Beyond #phylogenomics: Innovative applications of target capture data”
More info at: botany.org/home/publica... @yannickwoudstra.bsky.social @erikarmoore11.bsky.social @emcassey.bsky.social #genomics
Submit your proposal for the #AppsPlantSci special issue: “Beyond #phylogenomics: Innovative applications of target capture data”
More info at: botany.org/home/publica... @yannickwoudstra.bsky.social @erikarmoore11.bsky.social @emcassey.bsky.social #genomics
November 24, 2025 at 4:51 PM
CALL FOR PAPERS 🌿 DEADLINE NOV 30
Submit your proposal for the #AppsPlantSci special issue: “Beyond #phylogenomics: Innovative applications of target capture data”
More info at: botany.org/home/publica... @yannickwoudstra.bsky.social @erikarmoore11.bsky.social @emcassey.bsky.social #genomics
Submit your proposal for the #AppsPlantSci special issue: “Beyond #phylogenomics: Innovative applications of target capture data”
More info at: botany.org/home/publica... @yannickwoudstra.bsky.social @erikarmoore11.bsky.social @emcassey.bsky.social #genomics
Reposted by John Hodge
Really pleased to share the first paper to come out of the lab.
We found that hospital patients were frequently colonised with P. aeruginosa and that the same clone was shared between the gut and the lung.
The phylogenies indicate that the clones moved from lung->gut
www.nature.com/articles/s41...
We found that hospital patients were frequently colonised with P. aeruginosa and that the same clone was shared between the gut and the lung.
The phylogenies indicate that the clones moved from lung->gut
www.nature.com/articles/s41...
High frequency body site translocation of nosocomial Pseudomonas aeruginosa - Nature Communications
Here, the authors report within-host diversity and body site translocation dynamics in hospital samples of Pseudomonas aeruginosa and reveal that body site sharing was likely due to within-patient tra...
www.nature.com
November 25, 2025 at 10:40 AM
Really pleased to share the first paper to come out of the lab.
We found that hospital patients were frequently colonised with P. aeruginosa and that the same clone was shared between the gut and the lung.
The phylogenies indicate that the clones moved from lung->gut
www.nature.com/articles/s41...
We found that hospital patients were frequently colonised with P. aeruginosa and that the same clone was shared between the gut and the lung.
The phylogenies indicate that the clones moved from lung->gut
www.nature.com/articles/s41...
Reposted by John Hodge
#OpenCloning is a an Open Source alternative to SnapGene/Benchling that supports automation and integration with other software
✅ Free
🔓 Open Source
🧬 More cloning methods than SnapGene
🤖 Can be automated with python
👨🔬 Built by a researcher — for researchers!
👉 Check it out at opencloning.org
✅ Free
🔓 Open Source
🧬 More cloning methods than SnapGene
🤖 Can be automated with python
👨🔬 Built by a researcher — for researchers!
👉 Check it out at opencloning.org
November 24, 2025 at 4:57 PM
#OpenCloning is a an Open Source alternative to SnapGene/Benchling that supports automation and integration with other software
✅ Free
🔓 Open Source
🧬 More cloning methods than SnapGene
🤖 Can be automated with python
👨🔬 Built by a researcher — for researchers!
👉 Check it out at opencloning.org
✅ Free
🔓 Open Source
🧬 More cloning methods than SnapGene
🤖 Can be automated with python
👨🔬 Built by a researcher — for researchers!
👉 Check it out at opencloning.org
Reposted by John Hodge
Looking at the physical state of the White House, I could see why this move happened.
I expect American buildings to become less safe, less efficient, less creative, and less elegant long-term as a result of the Trump administration's policies
www.dezeen.com/2025/11/24/a...
I expect American buildings to become less safe, less efficient, less creative, and less elegant long-term as a result of the Trump administration's policies
www.dezeen.com/2025/11/24/a...
Architecture no longer considered a "professional degree" in USA
Students in the USA will receive lower loans under the terms of the One Big Beautiful Bill as architecture will not be considered a professional degree.
www.dezeen.com
November 24, 2025 at 6:03 PM
Looking at the physical state of the White House, I could see why this move happened.
I expect American buildings to become less safe, less efficient, less creative, and less elegant long-term as a result of the Trump administration's policies
www.dezeen.com/2025/11/24/a...
I expect American buildings to become less safe, less efficient, less creative, and less elegant long-term as a result of the Trump administration's policies
www.dezeen.com/2025/11/24/a...
Reposted by John Hodge
Very happy to share that this paper is now online on @currentbiology.bsky.social !! 🥳🧪 Check out the final published verion here: www.cell.com/current-biol...
#mimuluspropaganda
#mimuluspropaganda
November 24, 2025 at 4:25 PM
Very happy to share that this paper is now online on @currentbiology.bsky.social !! 🥳🧪 Check out the final published verion here: www.cell.com/current-biol...
#mimuluspropaganda
#mimuluspropaganda
Reposted by John Hodge
Serial section videography (SSV): A low-cost protocol for generating 3D reconstructions of internal plant structure
New in #AppsPlantSci by Jacob Suissa & Giselle Reyes
bsapubs.onlinelibrary.wiley.com/doi/full/10.... #botany #plantanatomy #plantdevelopment #microCT #PlantScience
New in #AppsPlantSci by Jacob Suissa & Giselle Reyes
bsapubs.onlinelibrary.wiley.com/doi/full/10.... #botany #plantanatomy #plantdevelopment #microCT #PlantScience
November 20, 2025 at 4:48 PM
Serial section videography (SSV): A low-cost protocol for generating 3D reconstructions of internal plant structure
New in #AppsPlantSci by Jacob Suissa & Giselle Reyes
bsapubs.onlinelibrary.wiley.com/doi/full/10.... #botany #plantanatomy #plantdevelopment #microCT #PlantScience
New in #AppsPlantSci by Jacob Suissa & Giselle Reyes
bsapubs.onlinelibrary.wiley.com/doi/full/10.... #botany #plantanatomy #plantdevelopment #microCT #PlantScience
Reposted by John Hodge
With zero explanation, Wellesley College closing down a beloved and successful (and donor-funded) environmental justice program that (among other things) helps Indigenous students. thewellesleynews.com/22287/news-i...
Paulson Initiative to close, Suzanne Langridge dismissed
Wellesley College rejected Paulson Initiative donor Wendy Judge Paulson ’69’s renewed offer of donation, prompting the Paulson Ecology of Place Initiative to close at the end of the academic year. Pro...
thewellesleynews.com
November 23, 2025 at 3:04 AM
With zero explanation, Wellesley College closing down a beloved and successful (and donor-funded) environmental justice program that (among other things) helps Indigenous students. thewellesleynews.com/22287/news-i...
Reposted by John Hodge
Spatiotemporal dynamics of CYCLOIDEA expression during early floral development in monkeyflower www.cell.com/current-biol...
Spatiotemporal dynamics of CYCLOIDEA expression during early floral development in monkeyflower
Bilateral floral symmetry is a repeated evolutionary innovation governed by the CYCLOIDEA-dependent
program, yet how the dorsal-specific CYC expression is initiated and maintained remains
elusive. Min...
www.cell.com
November 23, 2025 at 10:50 PM
Spatiotemporal dynamics of CYCLOIDEA expression during early floral development in monkeyflower www.cell.com/current-biol...
Reposted by John Hodge
#TansleyReview: Physiological roles of #lignins – tuning cell wall hygroscopy and #biomechanics
Pesquet, Cesarino, Kajita & Pawlowski
👇
📖 nph.onlinelibrary.wiley.com/doi/10.1111/...
#LatestIssue
Pesquet, Cesarino, Kajita & Pawlowski
👇
📖 nph.onlinelibrary.wiley.com/doi/10.1111/...
#LatestIssue
November 23, 2025 at 4:53 PM
Reposted by John Hodge
In this tough and moving essay, Caroline Kennedy's 35-year-old daughter Tatiana Schlossberg reveals that she is terminally ill with leukemia. She has some choice words about how her cousin Bobby has made the limited time she has left worse. www.newyorker.com/culture/the-...
A Battle with My Blood
When I was diagnosed with leukemia, my first thought was that this couldn’t be happening to me, to my family.
www.newyorker.com
November 22, 2025 at 3:31 PM
In this tough and moving essay, Caroline Kennedy's 35-year-old daughter Tatiana Schlossberg reveals that she is terminally ill with leukemia. She has some choice words about how her cousin Bobby has made the limited time she has left worse. www.newyorker.com/culture/the-...
Reposted by John Hodge
Live within 40 miles of Norwich and think you might be low in vitamin D? 📍
Take part in our study investigating whether tomatoes biofortified through gene editing to be high in vitamin in D can help boost vitamin D levels🌞
➡️ buff.ly/eH1w2rB
@johninnescentre.bsky.social
Take part in our study investigating whether tomatoes biofortified through gene editing to be high in vitamin in D can help boost vitamin D levels🌞
➡️ buff.ly/eH1w2rB
@johninnescentre.bsky.social
November 22, 2025 at 4:01 PM
Live within 40 miles of Norwich and think you might be low in vitamin D? 📍
Take part in our study investigating whether tomatoes biofortified through gene editing to be high in vitamin in D can help boost vitamin D levels🌞
➡️ buff.ly/eH1w2rB
@johninnescentre.bsky.social
Take part in our study investigating whether tomatoes biofortified through gene editing to be high in vitamin in D can help boost vitamin D levels🌞
➡️ buff.ly/eH1w2rB
@johninnescentre.bsky.social
Reposted by John Hodge
#FluorescenceFriday check out this time projection of microtubules in a katanin maize mutant taken by PhD student Steph Martinez 🔬
November 22, 2025 at 3:34 AM
#FluorescenceFriday check out this time projection of microtubules in a katanin maize mutant taken by PhD student Steph Martinez 🔬
Reposted by John Hodge
After 10 Fridays, 10 flowers, and 100+ drawings, the Florédex is complete! ✨
Come take a tour of the design and science behind 10 iconic flowers 🌺🧵
Come take a tour of the design and science behind 10 iconic flowers 🌺🧵
November 21, 2025 at 9:59 AM
After 10 Fridays, 10 flowers, and 100+ drawings, the Florédex is complete! ✨
Come take a tour of the design and science behind 10 iconic flowers 🌺🧵
Come take a tour of the design and science behind 10 iconic flowers 🌺🧵
Reposted by John Hodge
Among the cracked earth & blinding sunlight of California's Death Valley, one native plant not only survives — it thrives.
Read the story of how this plant helped @rheelab.bsky.social scientists reveal a blueprint for engineering heat-resilient crops: msutoday.msu.edu/news/2025/11...
#PlantScience
Read the story of how this plant helped @rheelab.bsky.social scientists reveal a blueprint for engineering heat-resilient crops: msutoday.msu.edu/news/2025/11...
#PlantScience
November 20, 2025 at 6:47 PM
Among the cracked earth & blinding sunlight of California's Death Valley, one native plant not only survives — it thrives.
Read the story of how this plant helped @rheelab.bsky.social scientists reveal a blueprint for engineering heat-resilient crops: msutoday.msu.edu/news/2025/11...
#PlantScience
Read the story of how this plant helped @rheelab.bsky.social scientists reveal a blueprint for engineering heat-resilient crops: msutoday.msu.edu/news/2025/11...
#PlantScience
Reposted by John Hodge
🍇 From UC Davis: Study finds cabernet sauvignon still carries stable epigenetic marks from its parent varieties, revealing centuries-long molecular memory in clonally propagated vines. (Dario Cantù, Carole Meredith)
▶️ www.ucdavis.edu/food/news/ca...
#Viticulture #Genetics
▶️ www.ucdavis.edu/food/news/ca...
#Viticulture #Genetics
Cabernet Sauvignon’s Long Memory Revealed
UC Davis scientists find chemical "switches" that control gene expression in cabernet sauvignon remain stable across hundreds of years of clonal reproduction.
www.ucdavis.edu
November 18, 2025 at 7:14 PM
🍇 From UC Davis: Study finds cabernet sauvignon still carries stable epigenetic marks from its parent varieties, revealing centuries-long molecular memory in clonally propagated vines. (Dario Cantù, Carole Meredith)
▶️ www.ucdavis.edu/food/news/ca...
#Viticulture #Genetics
▶️ www.ucdavis.edu/food/news/ca...
#Viticulture #Genetics
Reposted by John Hodge
📣 The latest issue of the journal published by The International Compositae Alliance (TICA) is out! Check it out at: www.compositae.org/capitulum_04...
November 18, 2025 at 12:58 PM
📣 The latest issue of the journal published by The International Compositae Alliance (TICA) is out! Check it out at: www.compositae.org/capitulum_04...
Reposted by John Hodge
Climate and hybridization shape #stomatal trait evolution in #Populus
📖 nph.onlinelibrary.wiley.com/doi/10.1111/...
by Zavala-Paez et al.
@WileyPlantSci @michellezavala.bsky.social @jillahamilton.bsky.social
📖 nph.onlinelibrary.wiley.com/doi/10.1111/...
by Zavala-Paez et al.
@WileyPlantSci @michellezavala.bsky.social @jillahamilton.bsky.social
November 19, 2025 at 10:27 AM
Climate and hybridization shape #stomatal trait evolution in #Populus
📖 nph.onlinelibrary.wiley.com/doi/10.1111/...
by Zavala-Paez et al.
@WileyPlantSci @michellezavala.bsky.social @jillahamilton.bsky.social
📖 nph.onlinelibrary.wiley.com/doi/10.1111/...
by Zavala-Paez et al.
@WileyPlantSci @michellezavala.bsky.social @jillahamilton.bsky.social
Reposted by John Hodge
Our latest paper has just been published in Cell!
doi.org/10.1016/j.ce...
We developed a new method called MCC ultra, which allows 3D chromatin structure to be visualised with a 1 base pair pixel size.
doi.org/10.1016/j.ce...
We developed a new method called MCC ultra, which allows 3D chromatin structure to be visualised with a 1 base pair pixel size.
November 5, 2025 at 5:20 PM
Our latest paper has just been published in Cell!
doi.org/10.1016/j.ce...
We developed a new method called MCC ultra, which allows 3D chromatin structure to be visualised with a 1 base pair pixel size.
doi.org/10.1016/j.ce...
We developed a new method called MCC ultra, which allows 3D chromatin structure to be visualised with a 1 base pair pixel size.
Reposted by John Hodge
WE FOUND IT! We trekked day and night through tiger-patrolled Sumatran rainforests accessible only under permit for this: Rafflesia hasseltii. Few people have ever seen this flower, and we watched it open by night. Magic.
November 19, 2025 at 12:48 AM
WE FOUND IT! We trekked day and night through tiger-patrolled Sumatran rainforests accessible only under permit for this: Rafflesia hasseltii. Few people have ever seen this flower, and we watched it open by night. Magic.
Reposted by John Hodge
Republicans worried that steep Medicaid cuts in their big tax bill would shutter rural hospitals. To pass it, they included a $50B rural health care fund.
But a very different group of hospitals will bear the brunt of the law: large urban safety-net hospitals.
www.nytimes.com/2025/11/18/u...
But a very different group of hospitals will bear the brunt of the law: large urban safety-net hospitals.
www.nytimes.com/2025/11/18/u...
November 18, 2025 at 1:59 PM
Republicans worried that steep Medicaid cuts in their big tax bill would shutter rural hospitals. To pass it, they included a $50B rural health care fund.
But a very different group of hospitals will bear the brunt of the law: large urban safety-net hospitals.
www.nytimes.com/2025/11/18/u...
But a very different group of hospitals will bear the brunt of the law: large urban safety-net hospitals.
www.nytimes.com/2025/11/18/u...
Reposted by John Hodge
Relevant to the newly described Australian horned bee:
How do YOU pronounce Megachile?
1) MEG-uh-KYE-lee
2) MEG-uh-CHILL-ee
3) SOMEthing ELSE
(Photo tax: Megachile campanulae taken with a dissecting scope last summer in Canada)
How do YOU pronounce Megachile?
1) MEG-uh-KYE-lee
2) MEG-uh-CHILL-ee
3) SOMEthing ELSE
(Photo tax: Megachile campanulae taken with a dissecting scope last summer in Canada)
November 19, 2025 at 1:46 AM
Relevant to the newly described Australian horned bee:
How do YOU pronounce Megachile?
1) MEG-uh-KYE-lee
2) MEG-uh-CHILL-ee
3) SOMEthing ELSE
(Photo tax: Megachile campanulae taken with a dissecting scope last summer in Canada)
How do YOU pronounce Megachile?
1) MEG-uh-KYE-lee
2) MEG-uh-CHILL-ee
3) SOMEthing ELSE
(Photo tax: Megachile campanulae taken with a dissecting scope last summer in Canada)
Happy to say that with the US govt now chugging along again we’ll have Sherry Flint-Garcia presenting at #Zeavolution tomorrow!
November 19, 2025 at 1:58 AM
Happy to say that with the US govt now chugging along again we’ll have Sherry Flint-Garcia presenting at #Zeavolution tomorrow!
Reposted by John Hodge
Nearly two weeks of surveillance footage from the Broadview ICE Detention Center has been "irretrievably destroyed" and cannot be produced as evidence in a lawsuit against the government over abhorrent conditions there:
www.404media.co/two-weeks-of...
www.404media.co/two-weeks-of...
Two Weeks of Surveillance Footage From ICE Detention Center ‘Irretrievably Destroyed’
"Defendants have indicated that some video between October 19, 2025 and October 31, 2025 has been irretrievably destroyed and therefore cannot be produced on an expedited basis or at all."
www.404media.co
November 18, 2025 at 3:00 PM
Nearly two weeks of surveillance footage from the Broadview ICE Detention Center has been "irretrievably destroyed" and cannot be produced as evidence in a lawsuit against the government over abhorrent conditions there:
www.404media.co/two-weeks-of...
www.404media.co/two-weeks-of...