Daphne Superville
dasuperville.bsky.social
Daphne Superville
@dasuperville.bsky.social
UCSF PhD candidate @gogalab | MIT ‘17 🦫 | 🇦🇷 🇺🇸| #metastasis #tumormicroenvironment
Pinned
Running NMF on your scRNAseq data? Check out my updates to Lyndsay Murrow's DECIPHER-seq package, now compatible with Seurat v5 objects and rliger v2! github.com/dasuperville...
GitHub - dasuperville/DECIPHER-seq-v2: Data and code to reproduce results from DECIPHER-seq paper. Updated for use with Seurat v5 objects and rLiger v2.
Data and code to reproduce results from DECIPHER-seq paper. Updated for use with Seurat v5 objects and rLiger v2. - dasuperville/DECIPHER-seq-v2
github.com
Reposted by Daphne Superville
Nature Methods names AI agents a “Method to Watch”!
We've started building active-learning loops with perturbation models, where AI proposes experiments & data closes loop. Supplying such models to agents could transform exp design into theory search.
www.nature.com/articles/s41...
Artificial intelligence agents for biology - Nature Methods
Artificial intelligence agents may have a transformative effect on how biological research is performed.
www.nature.com
December 12, 2025 at 3:46 PM
Reposted by Daphne Superville
RESEARCH | L Shen, W Zhu, L Qin, M Lu et al (Fudan U, CAS; CN) 🧪

Acetate accumulation and metastasis of hepatocarcinoma cells is driven by a metabolic interaction involving HCC-derived lactate and acetate secretion from tumour-associated macrophages

www.nature.com/articles/s42...
Tumour-associated macrophages serve as an acetate reservoir to drive hepatocellular carcinoma metastasis - Nature Metabolism
Acetate accumulation and metastasis of hepatocarcinoma cells is driven by a metabolic interaction involving HCC-derived lactate and acetate secretion from tumour-associated macrophages.
www.nature.com
December 12, 2025 at 4:48 PM
Reposted by Daphne Superville
December 10, 2025 at 7:08 PM
Reposted by Daphne Superville
Review: Neutrophil extracellular traps in cancer: immune modulation, therapy resistance, and the dilemma of targeting
www.nature.com/articles/s41...
December 8, 2025 at 6:50 PM
Reposted by Daphne Superville
Excited to present our newest pre-print, “Bispecific T cell engagers control solid tumors through clonal replacement and IL2-driven effector differentiation of CD8 T cells.”

www.biorxiv.org/content/10.6...

Fantastic collaboration b/n the Satpathy, Sage, and Garcia labs at Stanford
December 8, 2025 at 3:06 PM
Reposted by Daphne Superville
Reposted by Daphne Superville
Now online! The effect of shingles vaccination at different stages of the dementia disease course
The effect of shingles vaccination at different stages of the dementia disease course
A natural experiment found that herpes zoster vaccination reduced the occurrence of mild cognitive impairment and deaths due to dementia, indicating that the vaccine may slow the progression of dementia throughout its clinical disease course.
dlvr.it
December 3, 2025 at 3:59 PM
Reposted by Daphne Superville
@nature.com asked me to write an op-ed on the perspective of the AI reviewing process, prompted by the recent partnership between @biorxivpreprint.bsky.social and @qedscience.bsky.social

Hope my perspective adds value to the conversation.

www.nature.com/articles/d41...
AI reviewers are here — we are not ready
Artificial intelligence promises rapid and polite feedback on papers — but we must first review the reviewer.
www.nature.com
December 3, 2025 at 10:56 AM
Reposted by Daphne Superville
Immunological surveillance against cancer across mammals (MHC-I) @natcomms.nature.com
@evozoodeb.bsky.social
www.nature.com/articles/s41...
November 25, 2025 at 8:17 PM
Reposted by Daphne Superville
Unanticipated role for PCSK9 in innate immune regulation leads to novel cancer immunotherapy approach of silencing PCSK9 to reshape spatiotemporal activation of STING @natcomms.nature.com
www.nature.com/articles/s41...
November 25, 2025 at 6:21 PM
Reposted by Daphne Superville
📢Last 2 weeks of #immunometabolism discoveries @biomednews.bsky.social ⬇️⬇️

biomed.news/bims-imicid/...
biomed.news/bims-imicid/...

Exciting to have a paper in the collection!

An inherited mitochondrial DNA mutation remodels inflammatory cytokine responses in macrophages and in vivo in mice
November 23, 2025 at 1:05 PM
Reposted by Daphne Superville
Now online! Macrophage-targeted immunocytokine leverages myeloid, T, and NK cell synergy for cancer immunotherapy
Macrophage-targeted immunocytokine leverages myeloid, T, and NK cell synergy for cancer immunotherapy
MiTEs are myeloid-targeted immunocytokine prodrugs that block TREM2+ tumor-associated macrophages while activating cytotoxic lymphocytes via TME-specific IL-2 activity, eliciting strong anti-tumor efficacy in preclinical models with minimal systemic toxicity.
dlvr.it
November 19, 2025 at 11:38 PM
Reposted by Daphne Superville
IFN-I signaling boosts salivary gland regeneration after irradiation @davidecinat.bsky.social
www.science.org/doi/10.1126/...
www.science.org/doi/10.1126/...
November 19, 2025 at 4:09 PM
Reposted by Daphne Superville
Also, here’s an accessible video intro:
November 15, 2025 at 5:33 PM
Reposted by Daphne Superville
#WeekendRead! #EveryCellIsAnImmuneCell! Riedel, Mattavelli, Helal &co show @cp-immunity.bsky.social that fibroblasts in breast cancer metastatic lymph nodes sense tumor-derived TLR4 agonists to attract monocytes & form an immunosuppressive niche, favoring lung metastasis!
dlvr.it/TPCYjz
A TLR4-dependent fibroblast-monocyte axis in tumor-draining lymph nodes contributes to metastasis in triple-negative breast cancer
Triple-negative breast cancer (TNBC) is characterized by high risks of relapse or metastatic disease. Mattavelli et al. identify a chemokine axis that recruits immunosuppressive monocytes to tumor-dra...
dlvr.it
November 15, 2025 at 3:54 PM
Reposted by Daphne Superville
Reposted by Daphne Superville
Interleukin-1β (IL-1β) is secreted primarily by dying monocytes rather than by live bystander monocytes, challenging established models.

#cryopyrin
#pyrin
#immunology
#science

buff.ly/2cBb3sk
Single-cell analysis reveals cell death as driver of NLRP3-mediated secretion of IL-1β in human monocytes - Nature Immunology
Lamkanfi, Shirasaki, Izawa and colleagues show that IL-1β release in human monocytes stimulated with lipopolysaccharide or carrying NLRP3 activatory mutations is mostly restricted to cells undergoing…
buff.ly
November 11, 2025 at 7:58 PM
Reposted by Daphne Superville
📕New in Journal of Experimental Medicine: Chen et al., show that radiotherapy may promote metastasis by upregulating YTHDF2 in dendritic cells, impairing MHC-1 cross presentation and CD8+ T cell activation.
Ludwig Cancer Research
https://ow.ly/BAeq50Xown3
November 7, 2025 at 5:42 PM
Reposted by Daphne Superville
Arja Ray, @maxkrummel.bsky.social et al. show that targeting CD206⁺ #macrophages disrupts the establishment of a key antitumor immune axis. rupress.org/jem/article/...

📘 In #cancer #immunotherapy collection: rupress.org/jem/collecti...

#SITC25
November 7, 2025 at 6:15 PM
Reposted by Daphne Superville
Now online! StealTHY: An immunogen-free CRISPR platform to expose concealed metastasis regulators in immunocompetent models
StealTHY: An immunogen-free CRISPR platform to expose concealed metastasis regulators in immunocompetent models
By sidestepping Cas9 immunogenicity, the StealTHY CRISPR platform enables immune-compatible in vivo genetic screens, directly translatable to humanized cancer models. Using this immune-stealth strategy allows for the discovery of metastatic drivers and reveals the AMH-AMHR2 axis as a clinically actionable pathway for dampening carcinoma metastasis.
dlvr.it
November 7, 2025 at 3:59 PM