Cameron Berry
@cameronwberry.bsky.social
Developmental Biologist studying 3'UTRs and translational regulation, Postdoc @ScienceStowers in @BazziniLab - PhD @DevBioStanford - 🏳️🌈 He/him #FirstGen
Reposted by Cameron Berry
Lin, Deng, Gao, Tan, Zhong, Tan, Tan, Virshup, Bosch, Perrimon and Wang (2026) Microproteins Simba1 and Simba2 activate Wingless signaling during the reactivation of neural stem cells in Drosophila. Nat. Comm. doi: 10.1038/s41467-025-66727-3. PMID: 41298547
November 27, 2025 at 1:16 PM
Lin, Deng, Gao, Tan, Zhong, Tan, Tan, Virshup, Bosch, Perrimon and Wang (2026) Microproteins Simba1 and Simba2 activate Wingless signaling during the reactivation of neural stem cells in Drosophila. Nat. Comm. doi: 10.1038/s41467-025-66727-3. PMID: 41298547
Reposted by Cameron Berry
With @burgesslab.bsky.social, not one, but TWO freshly caught T2T zebrafish reference genomes for the Tübingen and AB strains 🎣 🎣 🎉
🎉 Excited to share our new preprint presenting a complete de novo assembly of the zebrafish genome; a major advance for zebrafish genomics and research! 🧬
Full paper: www.biorxiv.org/content/10.1...
@zebrafishrock.bsky.social @izfs.bsky.social @zfinmod.bsky.social @modelzebrafish.bsky.social
Full paper: www.biorxiv.org/content/10.1...
@zebrafishrock.bsky.social @izfs.bsky.social @zfinmod.bsky.social @modelzebrafish.bsky.social
doi.org
November 26, 2025 at 2:51 PM
With @burgesslab.bsky.social, not one, but TWO freshly caught T2T zebrafish reference genomes for the Tübingen and AB strains 🎣 🎣 🎉
Reposted by Cameron Berry
We are pleased to announce a new preprint by @mlweilert.bsky.social: “Widespread low-affinity motifs enhance chromatin accessibility and regulatory potential in mESCs” (www.biorxiv.org/content/10.1...). See summary and longer recap below:
(TLDR; low-affinity motifs matter as pioneers!)
(TLDR; low-affinity motifs matter as pioneers!)
Widespread low-affinity motifs enhance chromatin accessibility and regulatory potential in mESCs
Low-affinity transcription factor (TF) motifs are an important element of the cis-regulatory code, yet they are notoriously difficult to map and mechanistically incompletely understood, limiting our a...
www.biorxiv.org
November 19, 2025 at 8:57 PM
We are pleased to announce a new preprint by @mlweilert.bsky.social: “Widespread low-affinity motifs enhance chromatin accessibility and regulatory potential in mESCs” (www.biorxiv.org/content/10.1...). See summary and longer recap below:
(TLDR; low-affinity motifs matter as pioneers!)
(TLDR; low-affinity motifs matter as pioneers!)
Reposted by Cameron Berry
Happy to share that my PhD project is finally published!🪱✨
Selfish genes are found across the tree of life. They can disrupt inheritance patterns and at the same time act as units for molecular innovation. Here we tried to answer one big question: how do selfish genes emerge in the first place?
Selfish genes are found across the tree of life. They can disrupt inheritance patterns and at the same time act as units for molecular innovation. Here we tried to answer one big question: how do selfish genes emerge in the first place?
Recurrent evolution of selfishness from an essential tRNA synthetase in Caenorhabditis tropicalis 🧪
www.nature.com/articles/s41...
www.nature.com/articles/s41...
Recurrent evolution of selfishness from an essential tRNA synthetase in Caenorhabditis tropicalis - Nature Ecology & Evolution
In Caenorhabditis tropicalis, three toxin–antidote elements arose via gene duplication from the essential tRNA-synthetase subunit FARS-3. The ancestral antidote probably acquired affinity for FARS-3, ...
www.nature.com
November 24, 2025 at 9:10 PM
Happy to share that my PhD project is finally published!🪱✨
Selfish genes are found across the tree of life. They can disrupt inheritance patterns and at the same time act as units for molecular innovation. Here we tried to answer one big question: how do selfish genes emerge in the first place?
Selfish genes are found across the tree of life. They can disrupt inheritance patterns and at the same time act as units for molecular innovation. Here we tried to answer one big question: how do selfish genes emerge in the first place?
Reposted by Cameron Berry
Here we go. Its ALL #NIHGrant applications. Dec 8 is the new deadline. And a one page prelim data update will be accepted for all May Council submissions. grants.nih.gov/grants/guide...
NOT-OD-26-012: Updated Guidance on Reopening of NIH Extramural Activities Following the October 1, 2025 - Lapse in Appropriations
NIH Funding Opportunities and Notices in the NIH Guide for Grants and Contracts: Updated Guidance on Reopening of NIH Extramural Activities Following the October 1, 2025 - Lapse in Appropriations NOT-...
grants.nih.gov
November 24, 2025 at 6:52 PM
Here we go. Its ALL #NIHGrant applications. Dec 8 is the new deadline. And a one page prelim data update will be accepted for all May Council submissions. grants.nih.gov/grants/guide...
Reposted by Cameron Berry
A bittersweet acceptance: Between a manuscript and grief
Stefanie Williams @sillysciencelady.bsky.social shares the story behind her paper on the synaptonemal complex, including a tribute to her supervisor Scott Hawley, who passed away while Stefanie was completing the research.
Stefanie Williams @sillysciencelady.bsky.social shares the story behind her paper on the synaptonemal complex, including a tribute to her supervisor Scott Hawley, who passed away while Stefanie was completing the research.
A bittersweet acceptance: Between a manuscript and grief - the Node
I was so excited when I received notification that my first first-author research paper was accepted. My excitement quickly turned into sadness with the realization that my co-PI was not seeing our vi...
thenode.biologists.com
November 17, 2025 at 9:58 AM
A bittersweet acceptance: Between a manuscript and grief
Stefanie Williams @sillysciencelady.bsky.social shares the story behind her paper on the synaptonemal complex, including a tribute to her supervisor Scott Hawley, who passed away while Stefanie was completing the research.
Stefanie Williams @sillysciencelady.bsky.social shares the story behind her paper on the synaptonemal complex, including a tribute to her supervisor Scott Hawley, who passed away while Stefanie was completing the research.
Reposted by Cameron Berry
First time on Bsky and first big announcement!
I am excited to announce that our new study explaining the missing heritability of many phenotypes using WGS data from ~347,000 UK Biobank participants has just been published in @Nature.
Our manuscript is here: www.nature.com/articles/s41....
I am excited to announce that our new study explaining the missing heritability of many phenotypes using WGS data from ~347,000 UK Biobank participants has just been published in @Nature.
Our manuscript is here: www.nature.com/articles/s41....
Estimation and mapping of the missing heritability of human phenotypes - Nature
WGS data were used from 347,630 individuals with European ancestry in the UK Biobank to obtain high-precision estimates of coding and non-coding rare variant heritability for 34 co...
www.nature.com
November 12, 2025 at 5:57 PM
First time on Bsky and first big announcement!
I am excited to announce that our new study explaining the missing heritability of many phenotypes using WGS data from ~347,000 UK Biobank participants has just been published in @Nature.
Our manuscript is here: www.nature.com/articles/s41....
I am excited to announce that our new study explaining the missing heritability of many phenotypes using WGS data from ~347,000 UK Biobank participants has just been published in @Nature.
Our manuscript is here: www.nature.com/articles/s41....
Reposted by Cameron Berry
Our new manuscript, led by Emily Corrigan, examines inhibitory neuron diversity across approximately 160 million years of evolutionary divergence, as part of BRAIN Initiative Cell Atlas Network (BICAN) developing brain atlas package: www.nature.com/articles/s41...
Conservation and alteration of mammalian striatal interneurons - Nature
An analysis of cell-type diversity in brain samples from a variety of mammalian species, both during development and in adult animals, reveals that the TAC3 initial class of striatal interneurons is c...
www.nature.com
November 7, 2025 at 6:06 PM
Our new manuscript, led by Emily Corrigan, examines inhibitory neuron diversity across approximately 160 million years of evolutionary divergence, as part of BRAIN Initiative Cell Atlas Network (BICAN) developing brain atlas package: www.nature.com/articles/s41...
Congrats =Dani!!! Amazing Defense 🤩 👏 👏
Our new PhD!! Congratulation Dr @dbmrl.bsky.social and thanks @aussiebiologist.bsky.social for Phd committee!!! @stowersgrad.bsky.social @stowersinstitute.bsky.social
November 11, 2025 at 3:09 AM
Congrats =Dani!!! Amazing Defense 🤩 👏 👏
Reposted by Cameron Berry
Check out our work on RNA structure in introns! Testing >100k base pairing patterns, we found that RNA structure can predictably tune gene expression. Just by changing intron sequence, we see a dynamic range of regulation comparable to messing e.g. with promoters. @karlaneugebauer.bsky.social
Control of gene output by intron RNA structure https://www.biorxiv.org/content/10.1101/2025.11.08.687378v1
November 10, 2025 at 5:32 PM
Check out our work on RNA structure in introns! Testing >100k base pairing patterns, we found that RNA structure can predictably tune gene expression. Just by changing intron sequence, we see a dynamic range of regulation comparable to messing e.g. with promoters. @karlaneugebauer.bsky.social
Reposted by Cameron Berry
Check out the latest work from our lab, led by Daniel Lin and Lara Elcavage: www.biorxiv.org/content/10.1... (1/3)
mRNA 3′ UTRs direct microRNA degradation to participate in imprinted gene networks and regulate growth
MicroRNAs direct downregulation of target mRNAs. Sometimes, however, this regulatory paradigm inverts, and a target RNA triggers the degradation of a microRNA. This target-directed microRNA degradatio...
www.biorxiv.org
November 7, 2025 at 6:33 PM
Check out the latest work from our lab, led by Daniel Lin and Lara Elcavage: www.biorxiv.org/content/10.1... (1/3)
Reposted by Cameron Berry
mRNA 3′ UTRs direct microRNA degradation to participate in imprinted gene networks and regulate growth. #miRNA #miRNAdegratdation #3UTR @biorxivpreprint.bsky.social
www.biorxiv.org/content/10.1...
www.biorxiv.org/content/10.1...
November 7, 2025 at 2:49 PM
mRNA 3′ UTRs direct microRNA degradation to participate in imprinted gene networks and regulate growth. #miRNA #miRNAdegratdation #3UTR @biorxivpreprint.bsky.social
www.biorxiv.org/content/10.1...
www.biorxiv.org/content/10.1...
Reposted by Cameron Berry
Don’t miss your opportunity to apply to become a RNA Society Jr Sci Rep! 🧬Applications close midnight tonight (PT) 🧑💻
Calling all Jr RNA Scientists: We are recruiting 2 new RNA Society Jr Sci Reps to lead existing and new initiatives for engaging junior members over the next two years! Details for submitting applications below. @rnasociety.bsky.social
November 7, 2025 at 10:32 AM
Don’t miss your opportunity to apply to become a RNA Society Jr Sci Rep! 🧬Applications close midnight tonight (PT) 🧑💻
Reposted by Cameron Berry
Attention Junior RNA Scientists - The deadline to apply for RNA Junior Scientist Representative positions with the RNA Society @rnasociety.bsky.social is midnight tomorrow! We are so excited to review your applications and to recruit the next cohort of Jr RNA Scientists Representatives 🤩
Calling all Jr RNA Scientists: We are recruiting 2 new RNA Society Jr Sci Reps to lead existing and new initiatives for engaging junior members over the next two years! Details for submitting applications below. @rnasociety.bsky.social
November 6, 2025 at 4:23 PM
Attention Junior RNA Scientists - The deadline to apply for RNA Junior Scientist Representative positions with the RNA Society @rnasociety.bsky.social is midnight tomorrow! We are so excited to review your applications and to recruit the next cohort of Jr RNA Scientists Representatives 🤩
Reposted by Cameron Berry
The Leading Edge Fellows gathered this week to celebrate Zara Weinberg, a beloved member of our community. Our 7th cohort of Leading Edge Fellows (2026) will be named in her honor.
The Zara Weinberg Leading Edge Cohort application is now open! Due Feb 2.
www.leadingedgesymposium.org/apply/
The Zara Weinberg Leading Edge Cohort application is now open! Due Feb 2.
www.leadingedgesymposium.org/apply/
November 5, 2025 at 5:48 PM
The Leading Edge Fellows gathered this week to celebrate Zara Weinberg, a beloved member of our community. Our 7th cohort of Leading Edge Fellows (2026) will be named in her honor.
The Zara Weinberg Leading Edge Cohort application is now open! Due Feb 2.
www.leadingedgesymposium.org/apply/
The Zara Weinberg Leading Edge Cohort application is now open! Due Feb 2.
www.leadingedgesymposium.org/apply/
Reposted by Cameron Berry
1/ Excited to share our new study with @brumbaugh-lab.bsky.social, out in @natbiotech.nature.com! P-bodies selectively sequester RNAs encoding cell fate regulators, often from the preceding developmental stage. Releasing these RNAs can drive changes in cell identity. 🧵 www.nature.com/articles/s41...
Selective RNA sequestration in biomolecular condensates directs cell fate transitions - Nature Biotechnology
Stem cell differentiation is controlled by manipulating RNA condensates.
www.nature.com
October 28, 2025 at 4:02 PM
1/ Excited to share our new study with @brumbaugh-lab.bsky.social, out in @natbiotech.nature.com! P-bodies selectively sequester RNAs encoding cell fate regulators, often from the preceding developmental stage. Releasing these RNAs can drive changes in cell identity. 🧵 www.nature.com/articles/s41...
Reposted by Cameron Berry
Please help distribute this announcement for the Ph.D. in Biology Program @stowersinstitute.bsky.social
October 29, 2025 at 6:17 PM
Reposted by Cameron Berry
Calling all Jr RNA Scientists: We are recruiting 2 new RNA Society Jr Sci Reps to lead existing and new initiatives for engaging junior members over the next two years! Details for submitting applications below. @rnasociety.bsky.social
October 21, 2025 at 3:14 PM
Calling all Jr RNA Scientists: We are recruiting 2 new RNA Society Jr Sci Reps to lead existing and new initiatives for engaging junior members over the next two years! Details for submitting applications below. @rnasociety.bsky.social
Reposted by Cameron Berry
New article @natneuro.nature.com by @yaleneuro.bsky.social Suzhou Yang & @kavliatyale.bsky.social Postdoc Fellow @zhenlei.bsky.social, highlighting studies by @frattalab.bsky.social Gitler & La Spada labs on the role of TDP-43 on mRNA 3' end in ALS @yalerna.bsky.social www.nature.com/articles/s41...
TDP-43 loss brings RNA to a twist ending - Nature Neuroscience
In amyotrophic lateral sclerosis (ALS), nuclear depletion and cytoplasmic aggregation of the RNA-binding protein TDP-43 cause widespread dysregulation of mRNA splicing. Two recent studies have now rev...
www.nature.com
October 21, 2025 at 12:16 PM
New article @natneuro.nature.com by @yaleneuro.bsky.social Suzhou Yang & @kavliatyale.bsky.social Postdoc Fellow @zhenlei.bsky.social, highlighting studies by @frattalab.bsky.social Gitler & La Spada labs on the role of TDP-43 on mRNA 3' end in ALS @yalerna.bsky.social www.nature.com/articles/s41...
Reposted by Cameron Berry
Happy to have contributed to this big story. We present new genome assemblies, genus-wide complementation and allele-specific expression analyses in hybrids between zebrafish and closely related Danio species with divergent pigment patterns. A vertebrate model genus for basic comparative biology.
October 20, 2025 at 2:21 AM
Happy to have contributed to this big story. We present new genome assemblies, genus-wide complementation and allele-specific expression analyses in hybrids between zebrafish and closely related Danio species with divergent pigment patterns. A vertebrate model genus for basic comparative biology.
Reposted by Cameron Berry
Our most recent study shows that stem cells in Schmidtea mediterranea do not rely on physical contacts or fixed structures to maintain their identity and regenerative potential.
@stowersinstitute.bsky.social @cp-cellreports.bsky.social @vilcekfoundation.bsky.social
www.cell.com/cell-reports...
@stowersinstitute.bsky.social @cp-cellreports.bsky.social @vilcekfoundation.bsky.social
www.cell.com/cell-reports...
October 19, 2025 at 7:56 PM
Our most recent study shows that stem cells in Schmidtea mediterranea do not rely on physical contacts or fixed structures to maintain their identity and regenerative potential.
@stowersinstitute.bsky.social @cp-cellreports.bsky.social @vilcekfoundation.bsky.social
www.cell.com/cell-reports...
@stowersinstitute.bsky.social @cp-cellreports.bsky.social @vilcekfoundation.bsky.social
www.cell.com/cell-reports...
Reposted by Cameron Berry
In this study, Gallicchio et al. describe how cleavage factor II (CFII) components serve as a mechanistic switch that controls alternative mRNA cleavage and polyadenylation during spermatogenic differentiation.
Learn more here:
➡️ tinyurl.com/gd351649
Learn more here:
➡️ tinyurl.com/gd351649
September 13, 2024 at 3:02 PM
In this study, Gallicchio et al. describe how cleavage factor II (CFII) components serve as a mechanistic switch that controls alternative mRNA cleavage and polyadenylation during spermatogenic differentiation.
Learn more here:
➡️ tinyurl.com/gd351649
Learn more here:
➡️ tinyurl.com/gd351649
Reposted by Cameron Berry
Check out the latest work from our lab, led by Arash Latifkar @ara-latifkar.bsky.social , www.biorxiv.org/content/10.1...
mRNA poly(A)-tail length is a battleground for coronavirus–host competition
Most eukaryotic mRNAs contain a poly(A) tail, which in post-embryonic cells enhances their stability. Many cytoplasmic RNA viruses also harbor poly(A) tails on their genomic RNA and mRNAs. Here, we re...
www.biorxiv.org
October 13, 2025 at 7:44 PM
Check out the latest work from our lab, led by Arash Latifkar @ara-latifkar.bsky.social , www.biorxiv.org/content/10.1...
Reposted by Cameron Berry
So excited to see this out in @natgenet.nature.com! An amazing collaboration with @gagneurlab.bsky.social, I am happy I was (a small) part of. Nucleotide dependencies can capture regulatory elements, including #RNA structures! Congrats to the whole team! Check it out: www.nature.com/articles/s41...
Nucleotide dependency analysis of genomic language models detects functional elements - Nature Genetics
Mapping pairwise nucleotide dependencies by leveraging genomic language models highlights functional genomic elements and predicts deleterious genetic variants more effectively than alignment-based conservation metrics.
www.nature.com
October 11, 2025 at 2:00 PM
So excited to see this out in @natgenet.nature.com! An amazing collaboration with @gagneurlab.bsky.social, I am happy I was (a small) part of. Nucleotide dependencies can capture regulatory elements, including #RNA structures! Congrats to the whole team! Check it out: www.nature.com/articles/s41...