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wile-phylote.bsky.social
Cody Coyotee
@wile-phylote.bsky.social
1.9K followers 1K following 160 posts
#BulbousLab - 🏳️‍🌈 - he/him - #geophytes
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wile-phylote.bsky.social
Cody Coyotee @wile-phylote.bsky.social · Jul 16
🚀🍊 Blast off! 🍊🚀

Excited to share that next month Zach and I will be joining the Department of Biology at the University of Central Florida!

Because of our love for midcentury modern design, we will only acknowledge the Citronaut as the official mascot. 😉

@emberts.bsky.social @ucf.bsky.social
Two people standing next to each other in front of sunflowers
Reposted by Cody Coyotee
science-irl.bsky.social
Is everyone ready for #Plantsgiving?!?!

Thank you @martinebotany.bsky.social for my favorite botanical tradition 🥹🌱
November 26, 2025 at 3:20 PM
Reposted by Cody Coyotee
jitkaklimesova.bsky.social
New on the belowground blog: Renewal buds and phenology plantlifebelowground.wordpress.com/2025/11/26/r...
Renewal buds: A hidden key to spring phenology
Research and photos by Renáta Schnablová from the Institute of Botany of the Czech Academy of Sciences. In the photo above, an overwintering renewal bud of Pulsatilla pratensis is fu…
plantlifebelowground.wordpress.com
November 26, 2025 at 10:44 AM
Reposted by Cody Coyotee
rschley.bsky.social
🌿Excited to share our new study in New Phytologist! 🌿
Polyploidy is a major force in plant evolution, but is understudied in the tropics. We find that polyploidy evolved multiple times in Inga, a characteristic Neotropical tree radiation (1/n) 🧵.

Full paper🔗: tinyurl.com/msnffhs8
November 25, 2025 at 1:11 PM
Reposted by Cody Coyotee
kheyduk.bsky.social
Big news, two sleeps until #plantsgiving ARE YOU READY?!
November 25, 2025 at 2:27 PM
Reposted by Cody Coyotee
martinebotany.bsky.social
Do you look at this and see at least 10 plant species? Then you are ready for #Plantsgiving 2025!

How many species will be served during your meal??? It ain't a competition, it's just about recognition.

#iamabotanist @botsocamerica.bsky.social @nybg.bsky.social
Plate with food.
November 22, 2025 at 11:35 PM
Reposted by Cody Coyotee
ryanamartin.bsky.social
Really excited to see this paper out in the world. It's an ambitious final chapter from past PhD student Aaron Yilmaz. We ask how eco-evolutionary dynamics play out in the context of urban evolution using a reciprocal transplant experiment. www.journals.uchicago.edu/doi/10.1086/...
Are there ecological consequences of urban adaptation? A test of eco-evolutionary dynamics in a terrestrial isopod (Oniscus asellus) | The American Naturalist: Vol 0, No ja
www.journals.uchicago.edu
November 22, 2025 at 1:50 AM
Reposted by Cody Coyotee
ilainematos.bsky.social
Growing old and tolerant? How Eucalypts and Acacias traits vary across life-stages.

Come see my poster and talk at ESA 2025 conference.

Monday, Nov 24
5:44 PM

Tuesday, Nov 25
3:00 PM

#ESA2025 #EcologicalSocietyOfAustralia #EcologyAustralia #BiodiversityOnTheBrink #KaurnaCountry #Adelaide
November 21, 2025 at 8:56 AM
Reposted by Cody Coyotee
yawaguchi.bsky.social
I’ve released a tool to sketch and edit phylogenetic trees!
yawak.jp/PhyloWeaver/

Load a Newick file and intuitively add/remove/resize branches.
Useful for quick conceptual trees, extracting subtrees, or turning ideas into Newick.
PhyloWeaver – Interactive phylogenetic tree editor
Edit and visualize phylogenetic trees directly in your browser. PhyloWeaver lets you interactively rearrange tree topologies and export high-quality figures for publications and presentations.
yawak.jp
November 18, 2025 at 1:59 AM
Reposted by Cody Coyotee
jennifermandel.bsky.social
📣 The latest issue of the journal published by The International Compositae Alliance (TICA) is out! Check it out at: www.compositae.org/capitulum_04...
Cover image of the woolly devil, a newly described species in the sunflower family.
November 18, 2025 at 12:58 PM
Reposted by Cody Coyotee
jackstack.bsky.social
Thread on today's paper, which is 3/4 from my dissertation on the evolution of fishes and using morphological data for phylogenetic analyses. Come with me, on a journey on phylogenetics and fishes.
anatomypubs.onlinelibrary.wiley.com/doi/10.1002/...
An ontological morphological phylogenetic framework for living and extinct ray‐finned fishes (Actinopterygii)
The ray-finned fishes include one out of every two species of living vertebrates on Earth and have an abundant fossil record stretching 380 million years into the past. The division of systematic kno...
anatomypubs.onlinelibrary.wiley.com
November 18, 2025 at 4:22 AM
Reposted by Cody Coyotee
sleepyfly.bsky.social
Join us at CU Denver Biology! We have an open search for an assistant professor in cell and molecular biology to support our research and teaching mission. cu.taleo.net/careersectio...
November 17, 2025 at 9:36 PM
Reposted by Cody Coyotee
gbifmorpho.bsky.social
New paper in @newphyt.bsky.social using @gbif.org mediated data:

Herbariograph: a deep‐learning tool to classify specimen images

#CiteTheDOI: ✅

https://doi.org/10.1111/nph.70447
Herbariograph: a deep‐learning tool to classify specimen images
Herbarium specimens are the physical evidence of plant diversity world-wide and a rich source of research data. With c. 402 M items, distributed in 3.9 k registered herbaria, in 182 countries, it is...
doi.org
November 13, 2025 at 11:56 AM
Reposted by Cody Coyotee
ljrissler.bsky.social
NSF is open again!

A few comments:

*Please be patient.
During a shutdown NSF employees cannot open computers or respond to emails.

*Merit review will continue. However panels won’t resume until after Dec 8th.

*POs remain excited and committed to advancing science and the scientific workforce.
November 13, 2025 at 5:58 PM
Reposted by Cody Coyotee
kevinmkruse.bsky.social
If you have tenure at Texas A&M and aren't maliciously emailing the president a dozen times every day to ask if you can say this or you can say that, then what's the point in having tenure?
phillewis.bsky.social Phil Lewis @phillewis.bsky.social · 13d
COLLEGE STATION, Texas (AP) — Texas A&M adopts policy requiring professors to get OK from school president to discuss certain race and gender issues.
A photo of Texas A&M University’s logo
November 13, 2025 at 11:18 PM
Reposted by Cody Coyotee
journalsysevo.bsky.social
Just re-upping our call for papers for our special issue on #genome #evolution! Deadline January 31, 2026, learn more here: onlinelibrary.wiley.com/page/journal...
Journal of Systematics and Evolution Call for Papers Genome Evolution
Submission deadline: Saturday, 31 January 2026
onlinelibrary.wiley.com
November 11, 2025 at 12:42 PM
Reposted by Cody Coyotee
maxjtelford.bsky.social
My book 'The Tree of Life' is published in the USA and Canada today.

Available as book, on kindle and as audio.

I would be really grateful for reposts.

www.amazon.com/Tree-Life-So...
www.amazon.ca/Tree-Life-So...
Cover of book titled The Tree of Life: solving science's greatest puzzle.
November 11, 2025 at 12:01 PM
Reposted by Cody Coyotee
hansonmark.bsky.social
We wrote the Strain on scientific publishing to highlight the problems of time & trust. With a fantastic group of co-authors, we present The Drain of Scientific Publishing:

a 🧵 1/n

Drain: arxiv.org/abs/2511.04820
Strain: direct.mit.edu/qss/article/...
Oligopoly: direct.mit.edu/qss/article/...
A table showing profit margins of major publishers. A snippet of text related to this table is below. 1. The four-fold drain 1.1 Money Currently, academic publishing is dominated by profit-oriented, multinational companies for whom scientific knowledge is a commodity to be sold back to the academic community who created it. The dominant four are Elsevier, Springer Nature, Wiley and Taylor & Francis, which collectively generated over US$7.1 billion in revenue from journal publishing in 2024 alone, and over US$12 billion in profits between 2019 and 2024 (Table 1A). Their profit margins have always been over 30% in the last five years, and for the largest publisher (Elsevier) always over 37%. Against many comparators, across many sectors, scientific publishing is one of the most consistently profitable industries (Table S1). These financial arrangements make a substantial difference to science budgets. In 2024, 46% of Elsevier revenues and 53% of Taylor & Francis revenues were generated in North America, meaning that North American researchers were charged over US$2.27 billion by just two for-profit publishers. The Canadian research councils and the US National Science Foundation were allocated US$9.3 billion in that year. A figure detailing the drain on researcher time. 1. The four-fold drain 1.2 Time The number of papers published each year is growing faster than the scientific workforce, with the number of papers per researcher almost doubling between 1996 and 2022 (Figure 1A). This reflects the fact that publishers’ commercial desire to publish (sell) more material has aligned well with the competitive prestige culture in which publications help secure jobs, grants, promotions, and awards. To the extent that this growth is driven by a pressure for profit, rather than scholarly imperatives, it distorts the way researchers spend their time. The publishing system depends on unpaid reviewer labour, estimated to be over 130 million unpaid hours annually in 2020 alone (9). Researchers have complained about the demands of peer-review for decades, but the scale of the problem is now worse, with editors reporting widespread difficulties recruiting reviewers. The growth in publications involves not only the authors’ time, but that of academic editors and reviewers who are dealing with so many review demands. Even more seriously, the imperative to produce ever more articles reshapes the nature of scientific inquiry. Evidence across multiple fields shows that more papers result in ‘ossification’, not new ideas (10). It may seem paradoxical that more papers can slow progress until one considers how it affects researchers’ time. While rewards remain tied to volume, prestige, and impact of publications, researchers will be nudged away from riskier, local, interdisciplinary, and long-term work. The result is a treadmill of constant activity with limited progress whereas core scholarly practices – such as reading, reflecting and engaging with others’ contributions – is de-prioritized. What looks like productivity often masks intellectual exhaustion built on a demoralizing, narrowing scientific vision. A table of profit margins across industries. The section of text related to this table is below: 1. The four-fold drain 1.1 Money Currently, academic publishing is dominated by profit-oriented, multinational companies for whom scientific knowledge is a commodity to be sold back to the academic community who created it. The dominant four are Elsevier, Springer Nature, Wiley and Taylor & Francis, which collectively generated over US$7.1 billion in revenue from journal publishing in 2024 alone, and over US$12 billion in profits between 2019 and 2024 (Table 1A). Their profit margins have always been over 30% in the last five years, and for the largest publisher (Elsevier) always over 37%. Against many comparators, across many sectors, scientific publishing is one of the most consistently profitable industries (Table S1). These financial arrangements make a substantial difference to science budgets. In 2024, 46% of Elsevier revenues and 53% of Taylor & Francis revenues were generated in North America, meaning that North American researchers were charged over US$2.27 billion by just two for-profit publishers. The Canadian research councils and the US National Science Foundation were allocated US$9.3 billion in that year. The costs of inaction are plain: wasted public funds, lost researcher time, compromised scientific integrity and eroded public trust. Today, the system rewards commercial publishers first, and science second. Without bold action from the funders we risk continuing to pour resources into a system that prioritizes profit over the advancement of scientific knowledge.
November 11, 2025 at 11:52 AM
Reposted by Cody Coyotee
elvisbranchini.bsky.social
Just published in @newphyt.bsky.social : my first paper in co-authorship with @virajalim.bsky.social and @routierlab.bsky.social.
This meta-analysis of Arabidopsis growth rates was quite a lot of work, but it's finally out:
nph.onlinelibrary.wiley.com/doi/10.1111/...
Screenshot of a New Phytologist scientific article by Viraj Alimchandani, Elvis Branchini and Anne-Lise Routier-Kierzkowska titled "A multiscale growth atlas of Arabidopsis: linking cell dynamics to organ development". The image includes a summary with the main findings of the paper.
November 10, 2025 at 3:09 PM
Reposted by Cody Coyotee
sarahmackattack.bsky.social
This year we have sold 31% of the advent calendars that we sold last year 😓

The art is so pretty and colorful 🥺
The facts are so good 🥺
Eels are so cool 🥺

Get an eel facts advent calendar at EelFacts.net
Sarah holds up an eel facts advent calendar in front of blooming flowers on her sidewalk. It says eel facts an advent calendar. It has 24 boxes with orange and yellow zigzags and yellow circles in the middle with numbers one through 24 in the middle of the boxes there are six eels depicted on this calendar, one green Moray, two splendid garden eels, one blue and yellow ribbon eel, and one American eel and one European.
November 9, 2025 at 2:24 PM
Reposted by Cody Coyotee
seemasheth.bsky.social
Amy Angert and I are recruiting a #postdoc to participate in a collaborative NSF-funded study of demographic responses to climate across the geographic range of the scarlet monkeyflower. Please repost! jobs.ncsu.edu/postings/224...
November 7, 2025 at 3:10 PM
Reposted by Cody Coyotee
hadley.nz
Do you teach #rstats? Do your students complain about how lame and old-fashioned dplyr is? Don't worry: I have the solution for you: github.com/hadley/genzp....

genzplyr is dplyr, but bussin fr fr no cap.
GitHub - hadley/genzplyr: dplyr but make it bussin fr fr no cap
dplyr but make it bussin fr fr no cap. Contribute to hadley/genzplyr development by creating an account on GitHub.
github.com
November 6, 2025 at 11:25 PM
Reposted by Cody Coyotee
benrlee.com
Just over one week left to apply to work as a PhD student with me in one of the most beautiful ecosystems in the US!
benrlee.com Ben R Lee, PhD @benrlee.com · Oct 3
🚨 Please repost widely!🚨

I am recruiting a PhD student to join my lab next fall to work on forest and climate change ecology projects in southern Appalachia! Come join me in one of the most beautiful, biodiverse, and understudied parts of North America. Details below and happy to answer questions
An ad for a PhD position to start fall 2026 working with me at ETSU. For more info, please email at LeeBR1@etsu.edu. A close-up picture of dimpled trout lilies active in early spring, still largely surrounded by the previous year's senesced tree leaves. A beautiful vista of the Blue Ridge Mountains from on top of Carver's Gap on the border between North Carolina and Tennessee.
November 7, 2025 at 12:50 PM
Reposted by Cody Coyotee
ijpsjournal.bsky.social
JA @ijpsjournal.bsky.social

Primers in the Plant Sciences: Tracing the history of angiosperm systematics through Liliales and Asparagales

@astragaler.bsky.social‬, @wile-phylote.bsky.social‬, @tribblelab.bsky.social

www.journals.uchicago.edu/doi/epdf/10....

#PlantScience
IJPS cover in yellow with a cartoon phylogeny of the asparagales and liliales and the title of the primer
November 6, 2025 at 11:30 PM
Reposted by Cody Coyotee
jevbio.bsky.social
How to use and interpret the #adaptationinertia framework of #phylogenetic comparative methods based on the Ornstein-Uhlenbeck process to study adaptation:

doi.org/10.1093/jeb/...

Pienaar et al. 2025
Phylogenetic comparative methods for studying adaptation: the adaptation-inertia framework
Abstract. Phylogenetic comparative methods are a major tool for evaluating macroevolutionary hypotheses. Methods based on the mean-reverting stochastic Orn
doi.org
November 6, 2025 at 6:15 PM
Reposted by Cody Coyotee
botsocamerica.bsky.social
CALL FOR PAPERS 🌿 DEADLINE APPROACHING

Submit your proposal by Nov 30 to the #AppsPlantSci special issue: “Beyond #phylogenomics: Innovative applications of target capture data”

botany.org/home/publica...

@yannickwoudstra.bsky.social @erikarmoore11.bsky.social @emcassey.bsky.social #genomics
The text at the top reads: “APPS Special Issue Call for Papers: Beyond phylogenomics: Innovative applications of target capture data”. The image beneath the title: On the left side of the image is a large circle divided in two halves: the left side of the circle comprises four images of flowers/herbarium specimens and the right side of the circle contains the text “Target Capture.” Five dotted line arrows point from the large circle to five smaller circles on the right. Smaller circles (clockwise from top): (1) “Off Target”, (2) “Biodiversity assessments”, (3) “Population genomics”, (4) “Evo-Devo”, (5) “Species identification”. The text beneath the image reads: “Proposal deadline November 30, 2025”. The Applications in Plant Sciences logo is in the bottom left corner, and a QR code is in the bottom right corner. Image credit: Yannick Woudstra.
November 3, 2025 at 3:20 PM