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ricfrausto.bsky.social
@ricfrausto.bsky.social
BAG, the neuron to rule them all. ;)
Reposted
A huge shoutout to all the dedicated grants management specialists at the NIH who are working around the clock to push grants out before the Sep 30 deadline. And also to the POs responding to frantic emails.
Not an easy job under the best of circumstances and right now it's the pits.
Thank you!
September 15, 2025 at 8:17 PM
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I think a good rule of thumb is to spend at least as much time thinking about your data as you did obtaining it. It's common for people to spend a lot less time thinking than doing which gives rise to all kinds of problems.
August 8, 2025 at 1:29 PM
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Undetermined: Free Will in Real Time and Through Time revistaseug.ugr.es/index.php/te... (my brief commentary on Robert Sapolsky's book 'Determined', with a response by him to this and other commentaries)
August 4, 2025 at 7:21 PM
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Mathematical models are essential tools for exploring the complex interplay between #cancer cells and their environment, but require expertise and abundant data to develop. Lance Munn & Rakesh Jain suggest that #AI is leading the way towards the next wave of tumor models 🧪 plos.io/4ofREUk
Challenges and opportunities for the next generation of computational tumor models
Mathematical models have become essential tools for exploring the complex interplay between cancer cells and their microenvironment, but require multidisciplinary expertise and abundant biological dat...
plos.io
August 5, 2025 at 4:15 PM
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Want to publish a NIH-funded paper in Nature? Well - unless your institution has an agreement with Springer, you'll have to be mega-rich to be compliant with NIH's new no-embargo policy. Springer is insisting on gold OA - that's $12,690 and that's extortion.
This is a useful summary of how some major publishers are responding to the new NIH policy. We've just updated our policies at @biologists.bsky.social: @dev-journal.bsky.social @jcellsci.bsky.social and @jexpbiol.bsky.social will allow authors to deposit the accepted version with zero embargo.
July 29, 2025 at 1:12 PM
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Very pleased to say we have an Assistant Professor job opening (tenure track) in the Department of Genetics at Trinity College Dublin! 😀
www.jobs.ac.uk/job/DOA399/a... - deadline is August 19th! Please repost!
July 23, 2025 at 1:43 PM
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Reminder! Tenure track position in Genetics at Trinity College Dublin! Come join us, we're nice... 😊 Please repost! 🙏
Very pleased to say we have an Assistant Professor job opening (tenure track) in the Department of Genetics at Trinity College Dublin! 😀
www.jobs.ac.uk/job/DOA399/a... - deadline is August 19th! Please repost!
July 29, 2025 at 11:52 AM
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The Anne West lab at Duke is hiring a postdoc to work on nuclear cell biology in neurogenesis. Please help me spread the word! Applications to [email protected].
July 27, 2025 at 8:27 PM
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🧬June's most-read Genetics paper independently validates previous research showing that #CElegans can inherit learned pathogen avoidance: buff.ly/HQgprLp
July 24, 2025 at 8:01 PM
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"To retreat from [diversity, equity and inclusion] is to close the door to possibilities for better science and a better future. This is not the time to step back. It’s unquestionably the time to step forward." @anthrofuentes.bsky.social

www.science.org/doi/10.1126/...
This is not the time to step back from diversity, equity, and inclusion
Recently, I exchanged views with a prominent Ivy League scientist who was complaining about the minority students and junior faculty applying to his program. He claimed that the university, through di...
www.science.org
July 17, 2025 at 7:36 PM
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Very happy to share our protocols paper for CELLO-seq. This will make single cell long read RNA-seq more accessible and provides analysis guidelines. We hope this helps the #transposon #TEsky community and folks working on #singleCell isoform and allelic #gene expression. doi.org/10.1038/s415...
Long-read RNA sequencing of transposable elements from single cells using CELLO-seq - Nature Protocols
Single-cell long-read RNA sequencing enables the high-fidelity mapping of single-cell expression data from highly sequence-similar transposable elements to unique genomic loci by correcting errors fro...
doi.org
July 16, 2025 at 4:55 PM
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Fresh off the presses in @currentbiology.bsky.social : Is the deuterostome clade an artefact? www.sciencedirect.com/science/arti...

We (yours truly, Paschalis Natsidis, Laura Piovani and co-leads Paschalia Kapli and @maxjtelford.bsky.social) set out to try to answer this question.

Why? (1/12)
Is the deuterostome clade an artifact?
There is a long-standing consensus that the animal phyla closest to our own phylum of Chordata are the Echinodermata and Hemichordata. These three phy…
www.sciencedirect.com
July 14, 2025 at 12:40 PM
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A day ahead of #FluorescenceFriday, a (temporal) switch from the bulb to the cortex.

🟣 NeuN
🔵 AnkG

🔬🧠🧪
July 10, 2025 at 9:16 AM
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Philosophers often talk about what "they take themselves to be doing". This sounded a bit precious to me at first, but it importantly allows for the possibility that they might be mistaken.
July 10, 2025 at 7:07 AM
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Phenotypic tolerance for rDNA copy number variation within the natural range of C. elegans

journals.plos.org/plosgenetics...
Phenotypic tolerance for rDNA copy number variation within the natural range of C. elegans
Author summary Certain segments of DNA are repeated hundreds to thousands of times within the same genome, posing an intriguing and understudied source of genetic variation between individuals. The ge...
journals.plos.org
July 10, 2025 at 9:00 PM
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I wonder why everyone doesn't just switch to pre-print servers ala arXiv and call it a day.
July 11, 2025 at 3:11 PM
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1/3) This may be a very important paper, it suggests that there are no prediction error encoding neurons in sensory areas of cortex:

www.biorxiv.org/content/10.1...

I personally am a big fan of the idea that cortical regions (allo and neo) are doing sequence prediction.

But...

🧠📈 🧪
Sensory responses of visual cortical neurons are not prediction errors
Predictive coding is theorized to be a ubiquitous cortical process to explain sensory responses. It asserts that the brain continuously predicts sensory information and imposes those predictions on lo...
www.biorxiv.org
July 11, 2025 at 3:45 PM
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I almost didn't attend #worm25. Was depressed by all the crap. But so glad I did. The community remains resilient, strong and productive. Was uplifting to meet up w/ so many friends. And seeing the great science being done by the younger generation and their excitement was incredibly heartening. 🙏💪
July 8, 2025 at 12:21 AM
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"No one’s Ph.D. journey is the same, and no one deserves to be shamed for how long it takes." #ScienceMagArchives scim.ag/44q2rCg
July 4, 2025 at 6:56 PM
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Idea of the day: For every publication the first author prepares & records a 10-20 minute seminar talk about the work that gets posted on the journal website along with the manuscript.
July 4, 2025 at 10:07 PM
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Cuticular collagens mediate cross-kingdom predator–prey interactions between trapping fungi and nematodes @PLOSBiology.org
Cuticular collagens mediate cross-kingdom predator–prey interactions between trapping fungi and nematodes
by Han-Wen Chang, Hung-Che Lin, Ching-Ting Yang, Rebecca J. Tay, Dao-Ming Chang, Yi-Chung Tung, Yen-Ping Hsueh Adhesive interactions, mediated by specific molecular and structural mechanisms, are fundamental to host–pathogen and predator–prey relationships, driving evolutionary dynamics and ecological interactions. Here, we investigate the cellular and molecular basis of adhesion between the nematode Caenorhabditis elegans and its natural predator the nematode-trapping fungus Arthrobotrys oligospora, which employs specialized adhesive nets to capture its prey. Using forward genetic screens, we identified C. elegans mutants that escape fungal traps and revealed the nuclear hormone receptor NHR-66 as a key regulator of fungal-nematode adhesion. Loss-of-function mutations in nhr-66 conferred resistance to fungal trapping through the downregulation of a large subset of cuticular collagen genes. Restoring collagen gene expression in nhr-66 mutants abolished the escape phenotype, highlighting the essential role of these structural proteins in fungal-nematode adhesion. Furthermore, sequence analysis of natural C. elegans populations revealed no obvious loss-of-function variants in nhr-66, suggesting selective pressures exist that balance adhesion-mediated predation risk with physiological robustness. We observed that loss of nhr-66 function resulted in a trade-off of increased hypersensitivity to hypoosmotic stress and cuticular fragility. These findings underscore the pivotal role of structural proteins in shaping ecological interactions and the evolutionary arms race between predator and prey.
dlvr.it
July 4, 2025 at 4:35 PM
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We are hiring a research assistant 👉 tinyurl.com/yxebtjbj to join our lab working on healthy #ageing and protein #aggregation in C. elegans 🪱. Deadline August 4th. 🙏 RT. #proteostasis @babrahaminst.bsky.social
hireful.
tinyurl.com
July 4, 2025 at 9:51 AM
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New preprint! Grad student Clover Stubbert and undergrad Cherry Soe worked out a serum-free media that sustains eggshell-less C. elegans embryos all the way through development, now making it possible to access any embryonic developmental stage with small molecules
www.biorxiv.org/content/10.1...
Long-term ex ovo culture of Caenorhabditis elegans embryos
The genetic tractability, transparency and invariant development of the C. elegans embryo have led to its broad adoption as a model system for the study of cell and developmental biology. Its impermea...
www.biorxiv.org
June 27, 2025 at 8:21 PM
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...and it doesn't end there: In a 2nd @biorxivpreprint.bsky.social that we posted back-to-back with @bjornschumacher.bsky.social‘s lab we show that in addition to affecting epigenetic inheritance, temperature perception controls genetic inheritance via transposons!
www.biorxiv.org/content/10.1...
Thermosensory neurons control genetic inheritance through regulation of germline transposons
Epigenetic inheritance can be influenced by environmental conditions and somatic inputs originating from different tissues. Such transgenerational inheritance is reversable as it does not lead to muta...
www.biorxiv.org
December 5, 2024 at 7:32 PM
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Some highlights of 2024 from our team! Crossing our fingers for a smooth(ish) 2025.
December 30, 2024 at 4:45 PM