CZproteo
@proteomicscz.bsky.social
Proteomic Section of the Czech Society for Biochemistry and Molecular Biology
Reposted by CZproteo
Early bird registration for the #EuBIC2026 Winter School has been extended until 10 December 2025. Register now!
#Proteomics #MassSpectrometry #Bioinformatics
#Proteomics #MassSpectrometry #Bioinformatics
November 25, 2025 at 10:07 PM
Early bird registration for the #EuBIC2026 Winter School has been extended until 10 December 2025. Register now!
#Proteomics #MassSpectrometry #Bioinformatics
#Proteomics #MassSpectrometry #Bioinformatics
Reposted by CZproteo
Don't miss the opportunity!
We’re excited to invite you to a career panel discussion featuring three outstanding speakers: Rudolf Aebersold, Marcus Bantschoff, Pascal Gaudet
📅 Date: November 27
⏰ Time: 2:00 PM
Don't miss it out and hear the inspiration from leaders in the field!
👉 Register here: docs.google.com/forms/d/e/1F...
📅 Date: November 27
⏰ Time: 2:00 PM
Don't miss it out and hear the inspiration from leaders in the field!
👉 Register here: docs.google.com/forms/d/e/1F...
November 25, 2025 at 11:08 AM
Don't miss the opportunity!
11th Informal Proteomic Meeting + CzechMS conference finished today with amazing keynote by Jana Roithova. Thank you all for participation and big thanks to our sponsors.
November 21, 2025 at 9:16 PM
11th Informal Proteomic Meeting + CzechMS conference finished today with amazing keynote by Jana Roithova. Thank you all for participation and big thanks to our sponsors.
#JosefChmelikAward for the best Czech proteomic publication published in 2024 goes to:
Blanka Holendova from @iphys-cas.bsky.social
pubmed.ncbi.nlm.nih.gov/39260557
Congratulations!
czproteo.cz/josef-chmeli...
Blanka Holendova from @iphys-cas.bsky.social
pubmed.ncbi.nlm.nih.gov/39260557
Congratulations!
czproteo.cz/josef-chmeli...
November 20, 2025 at 5:04 PM
#JosefChmelikAward for the best Czech proteomic publication published in 2024 goes to:
Blanka Holendova from @iphys-cas.bsky.social
pubmed.ncbi.nlm.nih.gov/39260557
Congratulations!
czproteo.cz/josef-chmeli...
Blanka Holendova from @iphys-cas.bsky.social
pubmed.ncbi.nlm.nih.gov/39260557
Congratulations!
czproteo.cz/josef-chmeli...
11th Informal Proteomic Meeting + CzechMS conference underway in Ceske Budejovice.
Excellent keynotes by Alexander Makarov and Bernhard Kuster.
www.czechms.org/en/events/cm...
#Proteomics #neformal2025
Excellent keynotes by Alexander Makarov and Bernhard Kuster.
www.czechms.org/en/events/cm...
#Proteomics #neformal2025
November 20, 2025 at 4:35 PM
11th Informal Proteomic Meeting + CzechMS conference underway in Ceske Budejovice.
Excellent keynotes by Alexander Makarov and Bernhard Kuster.
www.czechms.org/en/events/cm...
#Proteomics #neformal2025
Excellent keynotes by Alexander Makarov and Bernhard Kuster.
www.czechms.org/en/events/cm...
#Proteomics #neformal2025
Reposted by CZproteo
🗣️ We are looking forward to hosting Prof. Jana Roithová from #Radboud University for an #invitedlecture "Mass Spectrometry in Research of Chemical Reactions" next week — on Tuesday, 18 November, at 10:00 ► uochb.cz/en/event-calendar/334 ⤵
#UOCHB #IOCB #IOCBPrague #praguelectures #massspec
#UOCHB #IOCB #IOCBPrague #praguelectures #massspec
November 10, 2025 at 2:31 PM
🗣️ We are looking forward to hosting Prof. Jana Roithová from #Radboud University for an #invitedlecture "Mass Spectrometry in Research of Chemical Reactions" next week — on Tuesday, 18 November, at 10:00 ► uochb.cz/en/event-calendar/334 ⤵
#UOCHB #IOCB #IOCBPrague #praguelectures #massspec
#UOCHB #IOCB #IOCBPrague #praguelectures #massspec
Reposted by CZproteo
Check out our latest Newsletter from October eupa.org/disseminatio... ! A lot of cool things about upcoming events, a throw back on Saint-Malo, and updates from EuPA! Don't miss it out. And if you want to stay updated sign up to our mailing list eupa.org/contact/ !
EuPA Newsletter
The official newsletter of the European Proteomics Association, published by the EuPA Conference and Communication Committee.
eupa.org
November 6, 2025 at 6:39 PM
Check out our latest Newsletter from October eupa.org/disseminatio... ! A lot of cool things about upcoming events, a throw back on Saint-Malo, and updates from EuPA! Don't miss it out. And if you want to stay updated sign up to our mailing list eupa.org/contact/ !
Reposted by CZproteo
🚨 Less than 1 month left! 🚨
Students in Europe — want to run your own proteomics experiment?
Apply for the YPIC Student Proteomics Fund and get €5,000 to make it happen! 💡
Top 3 will present in Madrid (April 16, 2026)!
🗓️ Deadline: Nov 30, don’t miss your chance!
#YPIC #Proteomics #StudentGrant
Students in Europe — want to run your own proteomics experiment?
Apply for the YPIC Student Proteomics Fund and get €5,000 to make it happen! 💡
Top 3 will present in Madrid (April 16, 2026)!
🗓️ Deadline: Nov 30, don’t miss your chance!
#YPIC #Proteomics #StudentGrant
November 3, 2025 at 8:48 AM
🚨 Less than 1 month left! 🚨
Students in Europe — want to run your own proteomics experiment?
Apply for the YPIC Student Proteomics Fund and get €5,000 to make it happen! 💡
Top 3 will present in Madrid (April 16, 2026)!
🗓️ Deadline: Nov 30, don’t miss your chance!
#YPIC #Proteomics #StudentGrant
Students in Europe — want to run your own proteomics experiment?
Apply for the YPIC Student Proteomics Fund and get €5,000 to make it happen! 💡
Top 3 will present in Madrid (April 16, 2026)!
🗓️ Deadline: Nov 30, don’t miss your chance!
#YPIC #Proteomics #StudentGrant
Reposted by CZproteo
I try the newest version of DIA-NN, version 2.3 and its new Infini search approach on some Lumos and tismTOF HT datasets. If you're new to DIA-NN this might be a good video to watch. youtu.be/MIMnDw0loCk
We try the new DIA-NN 2.3 (November 2025)
YouTube video by Brett Phinney
youtu.be
November 3, 2025 at 8:01 PM
I try the newest version of DIA-NN, version 2.3 and its new Infini search approach on some Lumos and tismTOF HT datasets. If you're new to DIA-NN this might be a good video to watch. youtu.be/MIMnDw0loCk
Reposted by CZproteo
AlphaDIA enables DIA transfer learning for feature-free proteomics - @mannlab.bsky.social @jalew188.bsky.social go.nature.com/4qmEQMM
AlphaDIA enables DIA transfer learning for feature-free proteomics - Nature Biotechnology
An open-source platform for data-independent acquisition proteomics adapts predicted libraries to experimental settings.
go.nature.com
October 21, 2025 at 4:53 PM
AlphaDIA enables DIA transfer learning for feature-free proteomics - @mannlab.bsky.social @jalew188.bsky.social go.nature.com/4qmEQMM
Reposted by CZproteo
Registration is now open for the EuBIC-MS Winter School 2026!
Join us in Harrachov, Czechia for a week of keynotes, workshops, and networking on computational MS.
Info and registration: eubic-ms.org/events/2026-...
#EuBIC2026 #MassSpectrometry #MassSpec #Bioinformatics #Proteomics #Metabolomics
Join us in Harrachov, Czechia for a week of keynotes, workshops, and networking on computational MS.
Info and registration: eubic-ms.org/events/2026-...
#EuBIC2026 #MassSpectrometry #MassSpec #Bioinformatics #Proteomics #Metabolomics
October 16, 2025 at 9:36 AM
Registration is now open for the EuBIC-MS Winter School 2026!
Join us in Harrachov, Czechia for a week of keynotes, workshops, and networking on computational MS.
Info and registration: eubic-ms.org/events/2026-...
#EuBIC2026 #MassSpectrometry #MassSpec #Bioinformatics #Proteomics #Metabolomics
Join us in Harrachov, Czechia for a week of keynotes, workshops, and networking on computational MS.
Info and registration: eubic-ms.org/events/2026-...
#EuBIC2026 #MassSpectrometry #MassSpec #Bioinformatics #Proteomics #Metabolomics
11th Informal Proteomic Meeting + CzechMS conference
Nov 19 - 21, 2025, Ceske Budejovice, Czechia
Abstract submission extended till Monday, October 13
czproteo.cz/nps_aktualni/
#Proteomics #neformal2025
Nov 19 - 21, 2025, Ceske Budejovice, Czechia
Abstract submission extended till Monday, October 13
czproteo.cz/nps_aktualni/
#Proteomics #neformal2025
October 10, 2025 at 8:24 AM
11th Informal Proteomic Meeting + CzechMS conference
Nov 19 - 21, 2025, Ceske Budejovice, Czechia
Abstract submission extended till Monday, October 13
czproteo.cz/nps_aktualni/
#Proteomics #neformal2025
Nov 19 - 21, 2025, Ceske Budejovice, Czechia
Abstract submission extended till Monday, October 13
czproteo.cz/nps_aktualni/
#Proteomics #neformal2025
Reposted by CZproteo
The 2025 #NobelPrize in Chemistry was awarded today for the development of metal-organic frameworks, molecular sponges with applications in gas storage, water purification and more: www.compoundchem.com/2025/10/08/2...
#ChemSky 🧪
#ChemSky 🧪
October 8, 2025 at 9:00 PM
The 2025 #NobelPrize in Chemistry was awarded today for the development of metal-organic frameworks, molecular sponges with applications in gas storage, water purification and more: www.compoundchem.com/2025/10/08/2...
#ChemSky 🧪
#ChemSky 🧪
Reposted by CZproteo
mzPeak: Designing a Scalable, Interoperable, and Future-Ready Mass Spectrometry Data Format #JProteomeRes pubs.acs.org/doi/10.1021/...
mzPeak: Designing a Scalable, Interoperable, and Future-Ready Mass Spectrometry Data Format
Advances in mass spectrometry (MS) instrumentation, including higher resolution, faster scan speeds, and improved sensitivity, have dramatically increased the data volume and complexity. The adoption ...
pubs.acs.org
October 2, 2025 at 6:30 PM
mzPeak: Designing a Scalable, Interoperable, and Future-Ready Mass Spectrometry Data Format #JProteomeRes pubs.acs.org/doi/10.1021/...
Reposted by CZproteo
🎉 Exciting opportunity for students in proteomics! 🎉
The Student Proteomics Fund (SPF) is back!
📅 Key dates:
Call opens: October 1, 2025
Submission deadline: November 30, 2025
Don’t miss your chance to bring your research idea to life!
New boost
#SPF #YPIC #Proteomics
The Student Proteomics Fund (SPF) is back!
📅 Key dates:
Call opens: October 1, 2025
Submission deadline: November 30, 2025
Don’t miss your chance to bring your research idea to life!
New boost
#SPF #YPIC #Proteomics
September 23, 2025 at 9:10 AM
🎉 Exciting opportunity for students in proteomics! 🎉
The Student Proteomics Fund (SPF) is back!
📅 Key dates:
Call opens: October 1, 2025
Submission deadline: November 30, 2025
Don’t miss your chance to bring your research idea to life!
New boost
#SPF #YPIC #Proteomics
The Student Proteomics Fund (SPF) is back!
📅 Key dates:
Call opens: October 1, 2025
Submission deadline: November 30, 2025
Don’t miss your chance to bring your research idea to life!
New boost
#SPF #YPIC #Proteomics
Reposted by CZproteo
Are you using DIA mass spectrometry in proteomics?
We have just put this paper online: www.biorxiv.org/content/10.1...
Here, we came up with some Recommendations for Quantitative Data-Independent Acquisition (DIA) Proteomics using Controlled Quantitative Experiments (CQEs)
1/4
We have just put this paper online: www.biorxiv.org/content/10.1...
Here, we came up with some Recommendations for Quantitative Data-Independent Acquisition (DIA) Proteomics using Controlled Quantitative Experiments (CQEs)
1/4
Recommendations for Quantitative Data-Independent Acquisition (DIA) Proteomics using Controlled Quantitative Experiments (CQEs)
Advances in mass spectrometry and associated computational tools have resulted in the wide-spread adoption of Data-Independent Acquisition (DIA) for proteomics. Experiments using state-of-the-art inst...
eur03.safelinks.protection.outlook.com
September 23, 2025 at 9:44 AM
Are you using DIA mass spectrometry in proteomics?
We have just put this paper online: www.biorxiv.org/content/10.1...
Here, we came up with some Recommendations for Quantitative Data-Independent Acquisition (DIA) Proteomics using Controlled Quantitative Experiments (CQEs)
1/4
We have just put this paper online: www.biorxiv.org/content/10.1...
Here, we came up with some Recommendations for Quantitative Data-Independent Acquisition (DIA) Proteomics using Controlled Quantitative Experiments (CQEs)
1/4
Reposted by CZproteo
Proteomics Webinar: DIA with FragPipe, DIA-NN, and Skyline
Presenters: Eduard Sabidó and Brendan MacLean
When: Tuesday, September 16, 8am (Pacific Time)
Register Now ... skyline.ms/project/home...
#massspec #proteomics
Presenters: Eduard Sabidó and Brendan MacLean
When: Tuesday, September 16, 8am (Pacific Time)
Register Now ... skyline.ms/project/home...
#massspec #proteomics
Start Page: /home/software/Skyline/events/2025 Webinars/Webinar 26
skyline.ms
September 15, 2025 at 8:26 AM
Proteomics Webinar: DIA with FragPipe, DIA-NN, and Skyline
Presenters: Eduard Sabidó and Brendan MacLean
When: Tuesday, September 16, 8am (Pacific Time)
Register Now ... skyline.ms/project/home...
#massspec #proteomics
Presenters: Eduard Sabidó and Brendan MacLean
When: Tuesday, September 16, 8am (Pacific Time)
Register Now ... skyline.ms/project/home...
#massspec #proteomics
Reposted by CZproteo
Join us for 19th YPIC Webinar – “Transition from Academia to Start-Up”
Ever wondered what it takes to turn your research into a company?! 🧪
Information in comments!
#YPIC #Proteomics #ScienceToStartup #ScienceCareers #Entrepreneurship #Biotech #AcademicTransition #Webinar #StartUpScience
Ever wondered what it takes to turn your research into a company?! 🧪
Information in comments!
#YPIC #Proteomics #ScienceToStartup #ScienceCareers #Entrepreneurship #Biotech #AcademicTransition #Webinar #StartUpScience
September 11, 2025 at 8:47 AM
Join us for 19th YPIC Webinar – “Transition from Academia to Start-Up”
Ever wondered what it takes to turn your research into a company?! 🧪
Information in comments!
#YPIC #Proteomics #ScienceToStartup #ScienceCareers #Entrepreneurship #Biotech #AcademicTransition #Webinar #StartUpScience
Ever wondered what it takes to turn your research into a company?! 🧪
Information in comments!
#YPIC #Proteomics #ScienceToStartup #ScienceCareers #Entrepreneurship #Biotech #AcademicTransition #Webinar #StartUpScience
CSBMB 28th Biochemistry Congress csbmb2025.cz #Proteomics Section concludes with Targeted proteomics talk by Veronika Vidova #CSBMB2025
September 9, 2025 at 7:44 PM
CSBMB 28th Biochemistry Congress csbmb2025.cz #Proteomics Section concludes with Targeted proteomics talk by Veronika Vidova #CSBMB2025
Reposted by CZproteo
Major release of @pride-ebi.bsky.social submission tool:
- Smarter Java setup — bundled JRE
- Reliable file transfer logging with Aspera, FTP.
- Clearer instructions and troubleshooting in the README
- Automated releases through GitHub Actions, so updates are consistent
github.com/PRIDE-Archiv...
- Smarter Java setup — bundled JRE
- Reliable file transfer logging with Aspera, FTP.
- Clearer instructions and troubleshooting in the README
- Automated releases through GitHub Actions, so updates are consistent
github.com/PRIDE-Archiv...
Release v2.10.4 · PRIDE-Archive/px-submission-tool
🚀 PX Submission Tool v2.10.4
📦 Downloads
Versioned: px-submission-tool-v2.10.4.zip
Latest: px-submission-tool-latest.zip (always points to current version)
🔗 Universal Links
Latest Release: http...
github.com
September 5, 2025 at 9:10 AM
Major release of @pride-ebi.bsky.social submission tool:
- Smarter Java setup — bundled JRE
- Reliable file transfer logging with Aspera, FTP.
- Clearer instructions and troubleshooting in the README
- Automated releases through GitHub Actions, so updates are consistent
github.com/PRIDE-Archiv...
- Smarter Java setup — bundled JRE
- Reliable file transfer logging with Aspera, FTP.
- Clearer instructions and troubleshooting in the README
- Automated releases through GitHub Actions, so updates are consistent
github.com/PRIDE-Archiv...
Reposted by CZproteo
Thanks to both Ben @proteomicsnews.bsky.social & @benneely.com for a great chat on ProteomeXchange, HUPO-PSI, #quantms, formats, and PRIDE. I shared my personal view on open data, availability & standards. Feeling privileged to work at EMBL-EBI/PRIDE and grateful to keep learning from my colleagues.
This week’s #THEProteomicsShow continues to explore #AltProteomics, but this time more about the data. Ben @proteomicsnews.bsky.social and I sat down with Yasset @ypriverol.bsky.social and talked about non-mass spec data and related aspects. Find it wherever you find fine podcasts and enjoy!
August 15, 2025 at 2:37 PM
Thanks to both Ben @proteomicsnews.bsky.social & @benneely.com for a great chat on ProteomeXchange, HUPO-PSI, #quantms, formats, and PRIDE. I shared my personal view on open data, availability & standards. Feeling privileged to work at EMBL-EBI/PRIDE and grateful to keep learning from my colleagues.
Reposted by CZproteo
Seems like we keep saying the same things over and over in #science. Every biomedical researcher should have a graduate course in #statistics.
My record is $100k USD lost because a post doc had bad (well, no) experimental design for a proteomics project.
www.nature.com/articles/s41...
My record is $100k USD lost because a post doc had bad (well, no) experimental design for a proteomics project.
www.nature.com/articles/s41...
How thoughtful experimental design can empower biologists in the omics era - Nature Communications
Here, the authors discuss principles of experimental design that are relevant for all biology research, along with special considerations for projects using -omics approaches, highlighting common expe...
www.nature.com
August 9, 2025 at 11:34 AM
Seems like we keep saying the same things over and over in #science. Every biomedical researcher should have a graduate course in #statistics.
My record is $100k USD lost because a post doc had bad (well, no) experimental design for a proteomics project.
www.nature.com/articles/s41...
My record is $100k USD lost because a post doc had bad (well, no) experimental design for a proteomics project.
www.nature.com/articles/s41...
Reposted by CZproteo
🔬 Join us online for the 8th Differential Analysis of Quantitative Proteomics Data using R! (#free of charge)
📅 16–17 Sep 2025, 9:00–13:00 UTC+2
🧑🏫 #R #Beginner course! No prior R skills needed!
🔗 More information and registration: www.denbi.de/training-cou...
📅 16–17 Sep 2025, 9:00–13:00 UTC+2
🧑🏫 #R #Beginner course! No prior R skills needed!
🔗 More information and registration: www.denbi.de/training-cou...
July 16, 2025 at 11:16 AM
🔬 Join us online for the 8th Differential Analysis of Quantitative Proteomics Data using R! (#free of charge)
📅 16–17 Sep 2025, 9:00–13:00 UTC+2
🧑🏫 #R #Beginner course! No prior R skills needed!
🔗 More information and registration: www.denbi.de/training-cou...
📅 16–17 Sep 2025, 9:00–13:00 UTC+2
🧑🏫 #R #Beginner course! No prior R skills needed!
🔗 More information and registration: www.denbi.de/training-cou...