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piacosma.bsky.social
𝗕𝗹𝘂𝗲𝘀𝗸𝘆
@piacosma.bsky.social
The @crg.eu 2026 International PhD Programme is now open! Join our international community in Barcelona: www.crg.eu/en/content/t...
October 23, 2025 at 9:03 AM
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The cold sore virus reshapes the human genome’s architecture, rearranging its shape in three-dimensional space so that HSV-1 can access host genes most useful for its ability to reproduce. Read full paper led by @piacosma.bsky.social in Nature Communications:
Herpes simplex virus type 1 reshapes host chromatin architecture via transcription machinery hijacking - Nature Communications
Here, the authors show how HSV-1 rewires the host cell’s chromatin architecture during lytic infection by hijacking transcription machinery and forming contacts between viral and host genomes.
www.nature.com
June 19, 2025 at 12:59 PM
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This is one of a kind research outreach event. Scientists and artists have gathered together to deliver this sensory experience!
Endinsa’t en una vivència sensorial única que connecta ciència i art immersiu. “SEEING: Un ull i una caixa” arriba del 5 al 14 de juny al Centre Cívic Convent de Sant Agustí (Carrer del Comerç 36, Barcelona). www.crg.eu/en/event/see...
June 3, 2025 at 8:00 AM
Excited to share our Journal Club discussion on the invention of STORM microscopy, just published in Nature Reviews Molecular Biology! @natrevmcb.bsky.social @crg.eu

rdcu.be/ekUL7
The diffraction limit of light taken by storm
Nature Reviews Molecular Cell Biology - Pia Cosma recounts the development of STORM, which was the first microscopy method to break the diffraction limit of light.
rdcu.be
May 6, 2025 at 6:47 PM
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Reposted by 𝗕𝗹𝘂𝗲𝘀𝗸𝘆
We're very excited to announce the ECaBox Symposium in Barcelona on the 3rd of June 2025. Join global experts exploring the latest innovations in regenerative medicine for eye disease. Organised by @piacosma.bsky.social. Registration is now open!
ECaBox Symposium: Seeing the Future - EcaBox
Register for the ECaBox Symposium: Seeing the Future on 3rd June 2025, a full-day event bringing together leading experts to discuss the latest advancements in eye disease, retinal regeneration, and t...
ecabox.eu
March 25, 2025 at 8:40 AM
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In a study published in Horticulture Research, a research team leveraged ATAC-seq technology to profile chromatin accessibility in P. expansum during its vegetative growth and infection phases.
#ATAC-seq #chromatin accessibility
Details: doi.org/10.1093/hr/uhae264
March 26, 2025 at 2:20 PM
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So, is it compaction or decompaction? Here is a notable alternative hypothesis: "Our data suggest that the process of..loop extrusion per se is not required for enhancer function..Rather, it is the chromatin compaction brought about by loop extrusion that may be the important factor to consider."
Plenty of work required to rigorously test the proposed hypothesis but my initial thoughts are this perspective by Adrian Bird in @cp-molcell.bsky.social may well be the most significant conceptual advance in the 3D genome organisation field in years:
www.sciencedirect.com/science/arti...
Cohesin as an essential disruptor of chromosome organization
Cohesin is a multi-subunit molecular machine that is able to create lateral chromatin loops within a linear chromosome fiber. Despite intense study, a…
www.sciencedirect.com
March 26, 2025 at 4:01 PM
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It was a pleasure to showcase our lab’s expertise in assays for DNA-protein interactions (ChIP & CUT&RUN), chromatin accessibility & more at #ABRF2025 (thanks for the invitation). A great discussion on how Epigenomics core @mdanderson.bsky.social is making impact to advance research missions.
March 26, 2025 at 3:12 PM
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Our Editor Megan King @luskinglab.bsky.social is attending our Biologists @ 100 conference. Reach out to Megan if you have questions about submitting your research to JCS or visit our website to find out more: journals.biologists.com/jcs/pages/re...
#biologists100
March 26, 2025 at 11:30 AM
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🧪🧬 Curious how your drug actually works?

Join our free webinar TOMORROW, 11AM ET to explore how chromatin mapping assays can uncover drug mechanisms of action.

Great for drug developers + preclinical researchers in oncology, immunology, and beyond.

🔗 Register: www.genengnews.com/multimedia/w...
March 25, 2025 at 7:47 PM
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Planarian stem cells have many unique properties, mediated in part by their dynamic chromatin state. The Duncan lab recently showed that chromatin remodeling protein BPTF is critical for maintaining these powerful functions.
bmcgenomics.biomedcentral.com/articles/10....
Chromatin remodeling protein BPTF mediates chromatin accessibility at gene promoters in planarian stem cells - BMC Genomics
Background The regulation of chromatin accessibility is essential in eukaryotic cells as one of several mechanisms that ensure gene activation occurs at appropriate times and in appropriate cell types...
bmcgenomics.biomedcentral.com
March 25, 2025 at 8:20 PM
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A genetic study of 11,555 people finds 60 genes implicated in congenital heart disease, a condition that affects 1–1.8% of all live births. The study could inform the development of early molecular diagnosis tools. In PNAS: www.pnas.org/doi/10.1073/...
March 25, 2025 at 6:40 PM
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Plasmodium falciparum's life cycle relies on Snf2L for gene expression control within its high AT content chromatin. Essential discovery! PMID:39972139, Nature 2025, @Nature https://doi.org/10.1038/s41586-025-08595-x #Medsky #Pharmsky #RNA #ASHG #ESHG 🧪
Plasmodium blood stage development requires the chromatin remodeller Snf2L | Nature
The complex life cycle of the malaria parasite Plasmodium falciparum involves several major differentiation stages, each requiring strict control of gene expression. Fundamental changes in chromatin structure and epigenetic modifications during life cycle progression suggest a central role for these mechanisms in regulating the transcriptional program of malaria parasite development1–6. P. falciparum chromatin is distinct from other eukaryotes, with an extraordinarily high AT content (>80%)7 and highly divergent histones resulting in atypical DNA packaging properties8. Moreover, the chromatin remodellers that are critical for shaping chromatin structure are not conserved and are unexplored in P. falciparum. Here we identify P. falciparum Snf2L (PfSnf2L, encoded by PF3D7_1104200) as an ISWI-related ATPase that actively repositions P. falciparum nucleosomes in vitro. Our results demonstrate that PfSnf2L is essential, regulating both asexual development and sexual differentiation. PfSn
doi.org
March 26, 2025 at 12:18 AM
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9/10 Preprint at www.biorxiv.org/content/10.1.... Data at huggingface.co/zhoujt1994/. Check it out if you're interested in epigenomics, chromatin structure and function, and single cell biology in diverse organ systems.
Human Body Single-Cell Atlas of 3D Genome Organization and DNA Methylation
Higher-order chromatin structure and DNA methylation are critical for gene regulation, but how these vary across the human body remains unclear. We performed multi-omic profiling of 3D genome structur...
www.biorxiv.org
March 25, 2025 at 3:49 PM
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Metabolic early warning signals of epigenetic tipping points under chromatin modifier competition https://www.biorxiv.org/content/10.1101/2025.03.24.644914v1
March 25, 2025 at 4:04 PM
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Metabolic early warning signals of epigenetic tipping points under chromatin modifier competition https://www.biorxiv.org/content/10.1101/2025.03.24.644914v1
March 25, 2025 at 4:04 PM
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Top-notch activation. Notch signals enhance effector CD8 T cell generation in #vaccination or infection. Fibroblastic reticular cells are the source of Notch signal. The signal is associated with chromatin opening in regions occupied by bZIP transcription factors.
@jem.org
doi.org/10.1084/jem....
Early Notch signals from fibroblastic reticular cells program effector CD8+ T cell differentiation
Fibroblastic reticular cells are the source of Notch ligands promoting the differentiation of short-lived effector CD8+ T cells. Induction of early Notch s
doi.org
March 25, 2025 at 9:58 AM
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Inside the nucleus, lncRNAs act as molecular architects, shaping gene expression and chromatin landscapes. But tracking them in action? That's the tricky part! Cutting edge imaging techniques are revealing how RNAs like Xist spread and silence genes, reshaping our understanding of epigenetics!
March 25, 2025 at 1:17 PM
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#ChromatinDays – Join Us!

SFB 1064's final annual meeting! Talks, reunion & BBQ Bash 🍖 on May 26-27. Guest speakers: former SFB & IRTG members. Alumni, don’t miss the BBQ & IRTG Satellite Session!

📢 Register now! Scan the QR code or visit: www.sfb1064.med.uni-muenchen.de/chromatin-da...

🐝 there!
March 25, 2025 at 1:05 PM
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3/ We developed a new approach to map the chromatin accessibility data to primary atlases using cisTopics loadings. We find that organoid cells recapitulate primary counterparts not only on transcriptomic, but also on chromatin accessibility level!
March 24, 2025 at 12:43 PM
Reposted by 𝗕𝗹𝘂𝗲𝘀𝗸𝘆
We thus propose that mitotic chromosome shape is dictated by Condensin-driven extrusion of long and overlapping loops up to a density set by chromatin self-repulsion.
March 24, 2025 at 3:47 PM
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Hey #ABRF attendees! Are you interested in setting up CUT&RUN chromatin mapping services?

Then make sure to see Cheryl Szany's talk about optimizing CUT&RUN services, TODAY at 4:30PM!

Stop by booth 103 for additional info and training opportunities to get started with CUT&RUN in your core today!
📢Calling all Genomics Cores! EpiCypher is attending #ABRF2025 next week, and we want to help YOU set up CUT&RUN in your cores. Stop by booth #103 and make sure to attend our talk on Monday, March 24th, during Session 4:30–5:45 PM. See you there! ✨
March 24, 2025 at 4:07 PM
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Studies on Gene Enhancer with KSHV mini-chromatin https://www.biorxiv.org/content/10.1101/2025.03.24.644916v1
March 25, 2025 at 2:17 AM