Muntasim Fuad
banner
muntasimfuad.bsky.social
Muntasim Fuad
@muntasimfuad.bsky.social
Reposted by Muntasim Fuad
Open Public Resource in R2: The RNA Atlas, the most complete #mRNA resource assessed in 300 tissues / cell types. Explore it for yourself at:

r2platform.com/rna_atlas/

#science #Datavisualization #transcriptome #ncRNA
November 8, 2025 at 3:40 PM
Reposted by Muntasim Fuad
scYeast: a Biological-knowledge-guided Foundation Model on Yeast Single-Cell Transcriptomics [updated]
Yeast model: Asymmetric Transformer architecture enhances generalization & interpretability.
October 27, 2025 at 4:48 PM
Reposted by Muntasim Fuad
Efficient and accurate search in petabase-scale sequence repositories www.nature.com/articles/s41... 🧬🖥️🧪
MetaGraph: metagraph.ethz.ch
Code: github.com/ratschlab/me...
October 9, 2025 at 5:10 PM
Reposted by Muntasim Fuad
Wnt Signalling: Exploring the origins of a signalling pathway
Wnt Signaling: Exploring the origins of a signaling pathway
The 19 Wnt proteins found in humans are part of a larger superfamily of proteins that are also found in Archaea and Bacteria.
buff.ly
October 7, 2025 at 10:02 AM
Reposted by Muntasim Fuad
Today my @nytimes.com colleagues and I are launching a new series called Lost Science. We interview US scientists who can no longer discover something new about our world, thanks to this year‘s cuts. Here is my first interview with a scientist who studied bees and fires. Gift link: nyti.ms/3IWXbiE
nyti.ms
October 8, 2025 at 11:29 PM
Reposted by Muntasim Fuad
A study published in the Journal of Translational Medicine finds that iron deficiency, dysregulation of iron homeostasis and ferroptosis pathways may contribute to colorectal cancer progression.

#MedSky #OncoSky
Impact of iron deficiency on therapeutic outcomes in colorectal cancer patients: a single-center cohort study - Journal of Translational Medicine
Background Iron deficiency (ID) exhibits strikingly high prevalence in colorectal cancer (CRC), yet its prognostic implications remain insufficiently characterized. This study aimed to evaluate the association between pre-treatment ID status and therapeutic outcomes in patients undergoing standardized treatment protocols for CRC. Methods A retrospective cohort of 1003 CRC patients was analyzed to assess the prevalence of ID and its correlations with clinicopathologic features, postoperative recovery, neoadjuvant therapy response, and iron metabolism and ferroptosis-related gene expression. The association of ID with clinicopathologic data, laboratory parameters, and treatment patient outcome was analyzed using logistic regression. Prussian blue staining was used to assess iron levels in tumor and adjacent noncancerous tissues. Bioinformatics was employed to analyze the expression levels of iron metabolism and ferroptosis-related genes. Results ID was identified in 50.85% (510/1003) of patients. Compared with non-ID patients, those with ID exhibited higher female predominance (56.8% vs. 43.2%), significant increased prevalence of anemia (76.2% vs. 23.8%), and elevated levels of C-reactive protein (CRP), along with decreased albumin (Alb) levels. Clinicopathologic associations with ID included larger tumor diameter, more advanced pathological T/N/M stages, poorer tumor differentiation, and increased lymphovascular and perineural invasion. Among patients received neoadjuvant therapy, ID was associated with higher clinical T/N stages and lower tumor regression grades. Postoperatively, ID patients experienced significantly longer time to first flatus, lower albumin levels, and elevated inflammatory markers. Prussian blue staining revealed reduced iron content in both tumor and adjacent tissues of ID patients. Molecular analyses identified dysregulated iron metabolism genes, with DMRT1, HAMP, FTH1, FTL, TFRC, LCN2, PCBP1 and PCBP2 upregulated and ACO1, IRPEB2, OTUD1, SLC40A1 and NCOA4 downregulated in tumor tissues. Ferroptosis suppressor genes (LCN2, TFRC and SLC40A1) were overexpressed in non-responders to chemoradiotherapy. Conclusion ID is closely associated with aggressive tumor biology, suboptimal response to neoadjuvant therapy, and impaired postoperative recovery. Dysregulation of iron homeostasis and ferroptosis pathways in ID patients may contribute to CRC progression. These findings highlight ID as a potential biomarker for risk stratification and suggest that targeting iron metabolism could improve therapeutic outcomes in CRC management.
bit.ly
October 8, 2025 at 10:00 PM
Reposted by Muntasim Fuad
Remembering Mark Norell, the palaeontologist whose discoveries helped to demonstrate that birds are living dinosaurs.

go.nature.com/433ddyk
Mark Norell obituary: palaeontologist who showed that dinosaurs still walk among us — as birds
Through fieldwork and innovative research, he transformed how scientists and the public perceive the prehistoric world.
go.nature.com
October 9, 2025 at 10:26 AM
Reposted by Muntasim Fuad
Swimming in the ocean and other natural bodies of water provides a connection to nature that's effective at reducing stress.
Open-ocean swimming has many health benefits — and some risks
Swimming in the ocean is not just great exercise; it also provides a connection to nature proponents say is especially effective at reducing stress.
www.washingtonpost.com
June 28, 2025 at 8:53 PM