Edwin Hernández-Garzón
@elfulbito.bsky.social
Core Facility Manager
@ci2a.bsky.social
. Biologist, 🔬 enthusiast. Elise's companion. Father of two little monsters.
@ci2a.bsky.social
. Biologist, 🔬 enthusiast. Elise's companion. Father of two little monsters.
Reposted by Edwin Hernández-Garzón
For #3DThursday we’re introducing Dynamic Depth color mapping! It encodes distance with smooth depth-aware gradients so layered structures pop without losing context.
🔬 #MicroCT of a P1 mouse
🥼 Hsu Lab, Baylor, @cwloganhsu.bsky.social
🎬 syGlass.io
#Microscopy #SciComm #3DVisualization #syGlass
🔬 #MicroCT of a P1 mouse
🥼 Hsu Lab, Baylor, @cwloganhsu.bsky.social
🎬 syGlass.io
#Microscopy #SciComm #3DVisualization #syGlass
November 13, 2025 at 1:31 PM
For #3DThursday we’re introducing Dynamic Depth color mapping! It encodes distance with smooth depth-aware gradients so layered structures pop without losing context.
🔬 #MicroCT of a P1 mouse
🥼 Hsu Lab, Baylor, @cwloganhsu.bsky.social
🎬 syGlass.io
#Microscopy #SciComm #3DVisualization #syGlass
🔬 #MicroCT of a P1 mouse
🥼 Hsu Lab, Baylor, @cwloganhsu.bsky.social
🎬 syGlass.io
#Microscopy #SciComm #3DVisualization #syGlass
Reposted by Edwin Hernández-Garzón
Felix Zhou's u-Segment3D is out:
www.nature.com/articles/s41...
It leverages 2D cell segmentations from orthoviews to generate a ‘consensus’ 3D segmentation.
It does a great job on segmenting densely packed samples, and we have used the algorithm in many applications.
www.nature.com/articles/s41...
It leverages 2D cell segmentations from orthoviews to generate a ‘consensus’ 3D segmentation.
It does a great job on segmenting densely packed samples, and we have used the algorithm in many applications.
November 12, 2025 at 2:41 AM
Felix Zhou's u-Segment3D is out:
www.nature.com/articles/s41...
It leverages 2D cell segmentations from orthoviews to generate a ‘consensus’ 3D segmentation.
It does a great job on segmenting densely packed samples, and we have used the algorithm in many applications.
www.nature.com/articles/s41...
It leverages 2D cell segmentations from orthoviews to generate a ‘consensus’ 3D segmentation.
It does a great job on segmenting densely packed samples, and we have used the algorithm in many applications.
Reposted by Edwin Hernández-Garzón
Interesante obituario de Antonio García-Bellido por @manuelansede.bsky.social en @elpais.com con comentarios de Ginés Morata, Alfonso Martínez-Arias y Javier Sampedro que ilustran el enorme impacto de su ciencia. @cbm-csic-uam.bsky.social
@raciencias.bsky.social
elpais.com/ciencia/2025...
@raciencias.bsky.social
elpais.com/ciencia/2025...
Muere Antonio García-Bellido, descubridor de las fronteras invisibles dentro de los seres vivos
El biólogo, fallecido a los 89 años, deja un legado científico que roza las alturas de los nobeles Santiago Ramón y Cajal y Severo Ochoa
elpais.com
November 11, 2025 at 2:18 PM
Interesante obituario de Antonio García-Bellido por @manuelansede.bsky.social en @elpais.com con comentarios de Ginés Morata, Alfonso Martínez-Arias y Javier Sampedro que ilustran el enorme impacto de su ciencia. @cbm-csic-uam.bsky.social
@raciencias.bsky.social
elpais.com/ciencia/2025...
@raciencias.bsky.social
elpais.com/ciencia/2025...
Reposted by Edwin Hernández-Garzón
🔬 #SPAOM2025 comes to a close!
Grateful for everyone who shared knowledge, passion & innovation this week. 🙌
🏆 Congrats to our award winners for outstanding work in microscopy & optical methods!
See you at the next edition 👀💙
#SPAOM #Science #Microscopy #Collaboration
Grateful for everyone who shared knowledge, passion & innovation this week. 🙌
🏆 Congrats to our award winners for outstanding work in microscopy & optical methods!
See you at the next edition 👀💙
#SPAOM #Science #Microscopy #Collaboration
November 7, 2025 at 7:55 PM
🔬 #SPAOM2025 comes to a close!
Grateful for everyone who shared knowledge, passion & innovation this week. 🙌
🏆 Congrats to our award winners for outstanding work in microscopy & optical methods!
See you at the next edition 👀💙
#SPAOM #Science #Microscopy #Collaboration
Grateful for everyone who shared knowledge, passion & innovation this week. 🙌
🏆 Congrats to our award winners for outstanding work in microscopy & optical methods!
See you at the next edition 👀💙
#SPAOM #Science #Microscopy #Collaboration
Reposted by Edwin Hernández-Garzón
My new ImageJ / Fiji toolkit is out 🔥! The goal is to make image handling & visualization easy, with an intuitive interface! Install it on Fiji with the "Image Viewer" update site
#microscopy #ImageJ #FluorescenceFriday #microscopyMonday
imagej.net/plugins/imag...
#microscopy #ImageJ #FluorescenceFriday #microscopyMonday
imagej.net/plugins/imag...
November 4, 2025 at 10:40 PM
My new ImageJ / Fiji toolkit is out 🔥! The goal is to make image handling & visualization easy, with an intuitive interface! Install it on Fiji with the "Image Viewer" update site
#microscopy #ImageJ #FluorescenceFriday #microscopyMonday
imagej.net/plugins/imag...
#microscopy #ImageJ #FluorescenceFriday #microscopyMonday
imagej.net/plugins/imag...
Reposted by Edwin Hernández-Garzón
The FPbase spectra viewer just had it's biggest software refactor in 6 years. It *should* be largely invisible to the end user (hopefully just faster and less buggy). Please let me know if you find any issues as you use it!
www.fpbase.org/spectra/
www.fpbase.org/spectra/
FPbase Fluorescence Spectra Viewer
An interactive fluorescence spectra viewer to evaluate the spectral properties of fluorescent proteins, organic dyes, filters, and detectors.
www.fpbase.org
November 4, 2025 at 3:03 PM
The FPbase spectra viewer just had it's biggest software refactor in 6 years. It *should* be largely invisible to the end user (hopefully just faster and less buggy). Please let me know if you find any issues as you use it!
www.fpbase.org/spectra/
www.fpbase.org/spectra/
Reposted by Edwin Hernández-Garzón
Episode 17 - perhaps my favorite yet. How do you write a forum.image.sc post that will get you the answers you need without revealing information you don't want to tell? @erinweisbart.bsky.social and I go through what the experts need to know to help you. Post your sci q's today on forum.image.sc !
October 27, 2025 at 6:20 PM
Episode 17 - perhaps my favorite yet. How do you write a forum.image.sc post that will get you the answers you need without revealing information you don't want to tell? @erinweisbart.bsky.social and I go through what the experts need to know to help you. Post your sci q's today on forum.image.sc !
Reposted by Edwin Hernández-Garzón
mStayRose is published in JBC 🥳🎉
Congratulations @wsctt.bsky.social @sporemohan.bsky.social and team for the monumental effort to make a non-natural amino acid incorporating fluorescent protein accessible. It's based on mStayGold, bright, and photostable:
www.jbc.org/article/S002...
Congratulations @wsctt.bsky.social @sporemohan.bsky.social and team for the monumental effort to make a non-natural amino acid incorporating fluorescent protein accessible. It's based on mStayGold, bright, and photostable:
www.jbc.org/article/S002...
StayRose: a photostable StayGold derivative red-shifted by genetic code expansion
Photobleaching of fluorescent proteins often limits the acquisition of high-quality
images in microscopy. StayGold, a novel dimeric green fluorescent protein recently
monomerised through sequence engi...
www.jbc.org
October 22, 2025 at 4:58 PM
mStayRose is published in JBC 🥳🎉
Congratulations @wsctt.bsky.social @sporemohan.bsky.social and team for the monumental effort to make a non-natural amino acid incorporating fluorescent protein accessible. It's based on mStayGold, bright, and photostable:
www.jbc.org/article/S002...
Congratulations @wsctt.bsky.social @sporemohan.bsky.social and team for the monumental effort to make a non-natural amino acid incorporating fluorescent protein accessible. It's based on mStayGold, bright, and photostable:
www.jbc.org/article/S002...
Reposted by Edwin Hernández-Garzón
¡SAVE THE DATE! Nueva actividad en el Instituto Cajal dentro de la #SemanaCSIC2025 👉"A tu cerebro le gusta el chocolate" 📷 Fecha: 4 de noviembre (17:00h) 📷Toda la información en el link de la bio ⚡ #InstitutoCajal #Neurociencia #Divulgación
October 22, 2025 at 6:24 AM
¡SAVE THE DATE! Nueva actividad en el Instituto Cajal dentro de la #SemanaCSIC2025 👉"A tu cerebro le gusta el chocolate" 📷 Fecha: 4 de noviembre (17:00h) 📷Toda la información en el link de la bio ⚡ #InstitutoCajal #Neurociencia #Divulgación
Reposted by Edwin Hernández-Garzón
Next blog post!
I built another simple Marimo app to explore FPs spectra and other properties. It was a fun little trip, I hope you find it insightful.
Find it here:
marcodallavecchia.gitlab.io/web/blog/mar...
I built another simple Marimo app to explore FPs spectra and other properties. It was a fun little trip, I hope you find it insightful.
Find it here:
marcodallavecchia.gitlab.io/web/blog/mar...
Exploring Fluorescent Proteins with Marimo – marcodallavecchia/web
Access, explore and interact with FP properties
marcodallavecchia.gitlab.io
October 20, 2025 at 6:17 AM
Next blog post!
I built another simple Marimo app to explore FPs spectra and other properties. It was a fun little trip, I hope you find it insightful.
Find it here:
marcodallavecchia.gitlab.io/web/blog/mar...
I built another simple Marimo app to explore FPs spectra and other properties. It was a fun little trip, I hope you find it insightful.
Find it here:
marcodallavecchia.gitlab.io/web/blog/mar...
Reposted by Edwin Hernández-Garzón
Big news! Our week-long #bioimageanalysis bootcamp is BACK! Learn how to think about bioimage analysis like the pros do, learn what corrections you should (and shouldn't!) apply to your images, learn open source tools, and more. Apply NOW at broad.io/BAB3 for our January 2026 course!
October 14, 2025 at 9:31 PM
Big news! Our week-long #bioimageanalysis bootcamp is BACK! Learn how to think about bioimage analysis like the pros do, learn what corrections you should (and shouldn't!) apply to your images, learn open source tools, and more. Apply NOW at broad.io/BAB3 for our January 2026 course!
Reposted by Edwin Hernández-Garzón
BioImage analysis friends - King's are recruiting for a full-time, permanent facility position! Come and work with fun microscopes and fun people (and me!) - please share! www.kcl.ac.uk/jobs/126345-...
Bioimage Analysis Specialist | King's College London
www.kcl.ac.uk
September 29, 2025 at 9:48 AM
BioImage analysis friends - King's are recruiting for a full-time, permanent facility position! Come and work with fun microscopes and fun people (and me!) - please share! www.kcl.ac.uk/jobs/126345-...
Reposted by Edwin Hernández-Garzón
Anyone interested in getting my job?
Do not hesitate to apply, it's a pretty good gig
Do not hesitate to apply, it's a pretty good gig
Come and work with us 5-year position available for a University Researcher in Bioimaging 1.11.2025-31.12.2030
abo.rekrytointi.com/paikat/index...
abo.rekrytointi.com/paikat/index...
University Researcher in Bioimaging / Universitetsforskare med inriktning bioimaging, 1.11.2025-31.12.2030
abo.rekrytointi.com
September 11, 2025 at 10:37 AM
Anyone interested in getting my job?
Do not hesitate to apply, it's a pretty good gig
Do not hesitate to apply, it's a pretty good gig
Reposted by Edwin Hernández-Garzón
La geometría oculta en el 🧠 !! Mi último artículo de divulgación en @es.theconversation.com sobre nuestro trabajo con Julio Esparza sobre los mapas hipocampales 👉🏼
theconversation.com/la-geometria...
theconversation.com/la-geometria...
La geometría oculta en el cerebro: así construimos mapas mentales para orientarnos en el mundo
Las neuronas se encienden formando anillos tridimensionales para reconocer el espacio que nos rodea y relacionar la información con nuestros recuerdos y experiencias.
theconversation.com
September 15, 2025 at 3:45 PM
La geometría oculta en el 🧠 !! Mi último artículo de divulgación en @es.theconversation.com sobre nuestro trabajo con Julio Esparza sobre los mapas hipocampales 👉🏼
theconversation.com/la-geometria...
theconversation.com/la-geometria...
Reposted by Edwin Hernández-Garzón
Proud to take on this challenge: building the new Centro de Neurociencias Cajal @institutocajal.bsky.social into a space where neuroscience crosses boundaries and transforms how we understand the 🧠!!
🚨 La neurocientífica 𝗟𝗶𝘀𝗲𝘁 𝗠𝗲𝗻é𝗻𝗱𝗲𝘇 𝗱𝗲 𝗹𝗮 𝗣𝗿𝗶𝗱𝗮 (@lmprida.bsky.social) es la nueva directora del 𝗖𝗲𝗻𝘁𝗿𝗼 𝗱𝗲 𝗡𝗲𝘂𝗿𝗼𝗰𝗶𝗲𝗻𝗰𝗶𝗮𝘀 𝗖𝗮𝗷𝗮𝗹 (𝗖𝗡𝗖) del @csic.es
👉 Su reto: situar a España en la vanguardia internacional con proyectos que transformen cómo entendemos el cerebro.
Más info: bit.ly/3I2QVFL
👉 Su reto: situar a España en la vanguardia internacional con proyectos que transformen cómo entendemos el cerebro.
Más info: bit.ly/3I2QVFL
September 4, 2025 at 4:39 PM
Proud to take on this challenge: building the new Centro de Neurociencias Cajal @institutocajal.bsky.social into a space where neuroscience crosses boundaries and transforms how we understand the 🧠!!
Reposted by Edwin Hernández-Garzón
🚨 La neurocientífica 𝗟𝗶𝘀𝗲𝘁 𝗠𝗲𝗻é𝗻𝗱𝗲𝘇 𝗱𝗲 𝗹𝗮 𝗣𝗿𝗶𝗱𝗮 (@lmprida.bsky.social) es la nueva directora del 𝗖𝗲𝗻𝘁𝗿𝗼 𝗱𝗲 𝗡𝗲𝘂𝗿𝗼𝗰𝗶𝗲𝗻𝗰𝗶𝗮𝘀 𝗖𝗮𝗷𝗮𝗹 (𝗖𝗡𝗖) del @csic.es
👉 Su reto: situar a España en la vanguardia internacional con proyectos que transformen cómo entendemos el cerebro.
Más info: bit.ly/3I2QVFL
👉 Su reto: situar a España en la vanguardia internacional con proyectos que transformen cómo entendemos el cerebro.
Más info: bit.ly/3I2QVFL
September 4, 2025 at 3:43 PM
🚨 La neurocientífica 𝗟𝗶𝘀𝗲𝘁 𝗠𝗲𝗻é𝗻𝗱𝗲𝘇 𝗱𝗲 𝗹𝗮 𝗣𝗿𝗶𝗱𝗮 (@lmprida.bsky.social) es la nueva directora del 𝗖𝗲𝗻𝘁𝗿𝗼 𝗱𝗲 𝗡𝗲𝘂𝗿𝗼𝗰𝗶𝗲𝗻𝗰𝗶𝗮𝘀 𝗖𝗮𝗷𝗮𝗹 (𝗖𝗡𝗖) del @csic.es
👉 Su reto: situar a España en la vanguardia internacional con proyectos que transformen cómo entendemos el cerebro.
Más info: bit.ly/3I2QVFL
👉 Su reto: situar a España en la vanguardia internacional con proyectos que transformen cómo entendemos el cerebro.
Más info: bit.ly/3I2QVFL
Reposted by Edwin Hernández-Garzón
The #CBIAS2025 abstract deadline is this Sunday, August 31st. Submit your #BioImageAnalysis work, whether it’s a new tool or a biological discovery. #EarlyCareerResearchers, this is for you! Short and flash talk slots are up for grabs.
www.crick.ac.uk/whats-on/cri...
www.crick.ac.uk/whats-on/cri...
August 26, 2025 at 11:12 AM
The #CBIAS2025 abstract deadline is this Sunday, August 31st. Submit your #BioImageAnalysis work, whether it’s a new tool or a biological discovery. #EarlyCareerResearchers, this is for you! Short and flash talk slots are up for grabs.
www.crick.ac.uk/whats-on/cri...
www.crick.ac.uk/whats-on/cri...
Reposted by Edwin Hernández-Garzón
We're happy to announce the 2025 International OME-NGFF workshop 🎉
📅 Dates:
- Symposium: Nov 10–11, 2025
- Hackathon: Nov 12–14, 2025
📍 Location: Zurich, Switzerland
Full details & registration: www.biovisioncenter.uzh.ch/en/events/Up...
#bioimaging #openscience #OMENGFF #OMEZarr
(1/x 🧵)
📅 Dates:
- Symposium: Nov 10–11, 2025
- Hackathon: Nov 12–14, 2025
📍 Location: Zurich, Switzerland
Full details & registration: www.biovisioncenter.uzh.ch/en/events/Up...
#bioimaging #openscience #OMENGFF #OMEZarr
(1/x 🧵)
August 25, 2025 at 9:07 AM
We're happy to announce the 2025 International OME-NGFF workshop 🎉
📅 Dates:
- Symposium: Nov 10–11, 2025
- Hackathon: Nov 12–14, 2025
📍 Location: Zurich, Switzerland
Full details & registration: www.biovisioncenter.uzh.ch/en/events/Up...
#bioimaging #openscience #OMENGFF #OMEZarr
(1/x 🧵)
📅 Dates:
- Symposium: Nov 10–11, 2025
- Hackathon: Nov 12–14, 2025
📍 Location: Zurich, Switzerland
Full details & registration: www.biovisioncenter.uzh.ch/en/events/Up...
#bioimaging #openscience #OMENGFF #OMEZarr
(1/x 🧵)
Reposted by Edwin Hernández-Garzón
🔬 REMOA 2025 SCIENTIFIC IMAGE CONTEST
If you use optical microscopy in your research, share your most stunning images!
🧪 Open to all adults
📸 Original and digitally processed images (no AI-generated)
🎁 Prize: Free registration to #SPAOM2025 (Braga, Nov 5–7)
📍 Deadline: september 1st
More info 👇
If you use optical microscopy in your research, share your most stunning images!
🧪 Open to all adults
📸 Original and digitally processed images (no AI-generated)
🎁 Prize: Free registration to #SPAOM2025 (Braga, Nov 5–7)
📍 Deadline: september 1st
More info 👇
July 4, 2025 at 8:52 PM
🔬 REMOA 2025 SCIENTIFIC IMAGE CONTEST
If you use optical microscopy in your research, share your most stunning images!
🧪 Open to all adults
📸 Original and digitally processed images (no AI-generated)
🎁 Prize: Free registration to #SPAOM2025 (Braga, Nov 5–7)
📍 Deadline: september 1st
More info 👇
If you use optical microscopy in your research, share your most stunning images!
🧪 Open to all adults
📸 Original and digitally processed images (no AI-generated)
🎁 Prize: Free registration to #SPAOM2025 (Braga, Nov 5–7)
📍 Deadline: september 1st
More info 👇
Reposted by Edwin Hernández-Garzón
Happy to be the next (and 1st female) @crg.eu director. The CRG always stood out to me, for its excellence in understanding life's principles, with implications for health and biodiversity, & its collaborative, open and innovative way of doing science. Thrilled to join its amazing community in 2026!
July 1, 2025 at 5:30 PM
Happy to be the next (and 1st female) @crg.eu director. The CRG always stood out to me, for its excellence in understanding life's principles, with implications for health and biodiversity, & its collaborative, open and innovative way of doing science. Thrilled to join its amazing community in 2026!
Reposted by Edwin Hernández-Garzón
- A postdoc to work on cancer extravasation (4-year project).
- A postdoc help in completing Filopodia-related lab projects (2-year).
- Multiple Marie Curie postdoc positions that will open in the fall.
- We will open a 5-year position to cover my teaching (70% research and 30% teaching).
- A postdoc help in completing Filopodia-related lab projects (2-year).
- Multiple Marie Curie postdoc positions that will open in the fall.
- We will open a 5-year position to cover my teaching (70% research and 30% teaching).
Are you looking for a postdoc?
I will be looking for 2-4 people after the summer to join the lab !!
Do not hesitate to reach out and disseminate !!
I will be looking for 2-4 people after the summer to join the lab !!
Do not hesitate to reach out and disseminate !!
July 1, 2025 at 4:46 AM
- A postdoc to work on cancer extravasation (4-year project).
- A postdoc help in completing Filopodia-related lab projects (2-year).
- Multiple Marie Curie postdoc positions that will open in the fall.
- We will open a 5-year position to cover my teaching (70% research and 30% teaching).
- A postdoc help in completing Filopodia-related lab projects (2-year).
- Multiple Marie Curie postdoc positions that will open in the fall.
- We will open a 5-year position to cover my teaching (70% research and 30% teaching).
Reposted by Edwin Hernández-Garzón
I gave in! After students asking for it, I now made a simple figure design checklist.
To help all scientists w/o graphic skills create clear, accessible, and truthful charts!
-> Out in @nature Cell Biology: rdcu.be/erwl4
#DataVisualization #PhD #SciComm
Thx for review @bethcimini.bsky.social + 2
To help all scientists w/o graphic skills create clear, accessible, and truthful charts!
-> Out in @nature Cell Biology: rdcu.be/erwl4
#DataVisualization #PhD #SciComm
Thx for review @bethcimini.bsky.social + 2
A checklist for designing and improving the visualization of scientific data
Nature Cell Biology - Creating clear and engaging scientific figures is crucial to communicate complex data. In this Comment, I condense principles from design, visual perception and data...
rdcu.be
June 18, 2025 at 8:33 AM
I gave in! After students asking for it, I now made a simple figure design checklist.
To help all scientists w/o graphic skills create clear, accessible, and truthful charts!
-> Out in @nature Cell Biology: rdcu.be/erwl4
#DataVisualization #PhD #SciComm
Thx for review @bethcimini.bsky.social + 2
To help all scientists w/o graphic skills create clear, accessible, and truthful charts!
-> Out in @nature Cell Biology: rdcu.be/erwl4
#DataVisualization #PhD #SciComm
Thx for review @bethcimini.bsky.social + 2
@jmfrade.bsky.social is showing his lab work in the press. From the chicken retina to the regulation of the cell cycle. The history of a trip that looks for alternative approaches to treat neurodegeneration.
En busca de una cura para el alzhéimer en el ojo de un pollo
Una idea de un investigador del CSIC se ha convertido en una terapia génica que se probará en humanos en 2026
elpais.com
June 25, 2025 at 5:55 AM
@jmfrade.bsky.social is showing his lab work in the press. From the chicken retina to the regulation of the cell cycle. The history of a trip that looks for alternative approaches to treat neurodegeneration.