Ben 🦠
banner
individualpttrn.bsky.social
Ben 🦠
@individualpttrn.bsky.social
Molecular biology, directed evolution, recombinant proteins, genome editing and some ghoulish tinkering. Formerly @INRAE_PACA and @Michiganstateu . Now @LRSV_Toulouse
Pinned
Time to put this here 🌱
Reposted by Ben 🦠
A synthetic transcription cascade enables direct in planta shoot regeneration for transgenesis and gene editing in multiple plants #resource #MolecularPlant cell.com/molecular-pl...
November 15, 2025 at 12:50 PM
Reposted by Ben 🦠
1/9 Metagenomics lets us read microbiomes in nature without cultivation, but writing (editing) them in their native context is still a major challenge.

Meet MetaEdit: a platform for pathway-scale metagenomic editing inside the gut microbiome. science.org/doi/10.1126/...
Metagenomic editing of commensal bacteria in vivo using CRISPR-associated transposases
Although metagenomic sequencing has revealed a rich microbial biodiversity in the mammalian gut, methods to genetically alter specific species in the microbiome are highly limited. Here, we introduce ...
science.org
November 14, 2025 at 2:25 PM
Reposted by Ben 🦠
🔥 At conferences, who asks the questions shapes who gets seen. Across 24 ID&CM meetings, women were 55% of delegates but asked 36% of questions.
💬 When women moderate or speak first, others follow.
Let’s change the pattern

bit.ly/47VL0eH
🙏 @maudsalmona.bsky.social & MicroID EmpowHERment consortium
November 13, 2025 at 9:48 AM
Reposted by Ben 🦠
Site-specific DNA insertion into the human genome with engineered recombinases - @pdhsu.bsky.social @arcinstitute.org go.nature.com/43kdvBg
Site-specific DNA insertion into the human genome with engineered recombinases - Nature Biotechnology
Engineered DNA recombinases efficiently and specifically insert genetic cargos without the use of landing pads.
go.nature.com
November 6, 2025 at 5:14 PM
Molecular cloning be like
November 3, 2025 at 4:09 PM
Reposted by Ben 🦠
PSA: Many of you may have noticed a website floating around called formatmypaper(dot)com. People rightly noted something was fishy. I dig into what happened here:
open.substack.com/pub/ubadah/p...
Beware giving this site your unpublished data
Users noticed the website had fake testimonials and a domain name registered seemingly overnight.
open.substack.com
October 23, 2025 at 2:07 PM
Reposted by Ben 🦠
Here's the link to the system, try it! qedscience.com
@qedscience.bsky.social
q.e.d Science
Critical Thinking AI for constructive criticism and science evaluation
qedscience.com
October 15, 2025 at 12:22 PM
Reposted by Ben 🦠
Finally, someone has solved a real problem with AI! No more having to take a paper in the format for a journal that rejected you, and reformat it for a new journal. Well done!! formatmypaper.com
October 15, 2025 at 6:33 AM
October 10, 2025 at 2:41 PM
Reposted by Ben 🦠
Kickstarting our Bluesky🦋 account with great news!
Our REPAIRome study finally out today in
@science.org
www.science.org/doi/10.1126/...
A comprehensive genetic catalog of human double-strand break repair
The analysis of DNA sequence outcomes provides molecular insights into double-strand break (DSB) repair mechanisms. Using parallel in-pool profiling of Cas9-induced insertions and deletions (indels) w...
www.science.org
October 4, 2025 at 7:27 AM
Engineered geminivirus replicons enable rapid in planta directed evolution | Science www.science.org/doi/10.1126/...
Engineered geminivirus replicons enable rapid in planta directed evolution
Directed evolution can rapidly generate genetic variants with new and enhanced properties, yet efficient platforms for performing such evolution directly in plant cells have been lacking. We developed...
www.science.org
October 3, 2025 at 8:37 AM
Reposted by Ben 🦠
Jane Goodall has died at the age of 91.

In 2020, Goodall spoke with Science Editor-in-Chief H. Holden Thorp for a #ScienceEditorial reflecting on the 60th anniversary of her arrival in Gombe to study wild chimpanzees. Read more: https://scim.ag/472Chb8
October 1, 2025 at 7:13 PM
Reposted by Ben 🦠
Reduction of prime editing errors by engineered Cas9 variants with relaxed nick positioning. #NBThighlight www.nature.com/articles/s41...
Engineered prime editors with minimal genomic errors - Nature
Engineered prime editor systems with reduced occurrences of unwanted insertions or deletions during genome editing are developed.
www.nature.com
September 22, 2025 at 11:54 AM
Reposted by Ben 🦠
You like engineering T cells, but you are missing the right flavor?

Check out 'one-pot' PASTA recipe 🔥🍝: www.biorxiv.org/content/10.1101/2025.09.10.675267v1

We combined a unique mix of CRISPR knock-in with serine integrases for easy-to-adopt
𝐏rogrammable
𝐀nd
𝐒ite-specific
𝐓ransgene
𝐀ddition
🧪
Versatile and efficient non-viral integration of large transgenes in human T cells via CRISPR knock-in and engineered integrases
Current gene transfer methods often lack the precision, versatility, or efficiency when integrating large transgenes, limiting the ability to engineer therapeutic T-cells with more complex payloads. H...
www.biorxiv.org
September 19, 2025 at 5:30 AM
Reposted by Ben 🦠
Happy to share the published version of our genetic toolbox, EASY-edit, for simple, flexible and efficient targeted editing in E. coli!

Feel free to to try it, we can send strains and plasmids!

academic.oup.com/nar/article/...
EASY-edit: a toolbox for high-throughput single-step custom genetic editing in bacteria
Abstract. Targeted gene editing can be achieved using CRISPR–Cas9-assisted recombineering. However, high-efficiency editing requires careful optimization f
academic.oup.com
September 10, 2025 at 1:02 PM
Reposted by Ben 🦠
Co-discoverer of reverse transcriptase at 32, Nobel Prize at 37, played a key role at the 1975 Asilomar comference.
David Baltimore, Nobel-Winning Molecular Biologist, Dies at 87
www.nytimes.com
September 7, 2025 at 8:37 PM
Reposted by Ben 🦠
De novo engineered guide RNA-directed transposition with TnpB-family proteins reveals features of naturally evolved systems www.biorxiv.org/content/10.1...
De novo engineered guide RNA-directed transposition with TnpB-family proteins reveals features of naturally evolved systems
Programmable DNA integration using CRISPR-associated transposons (CASTs) offers powerful capabilities for genome engineering. The single effector Cas12k CAST examples evolved from a fixed guide TnpB n...
www.biorxiv.org
August 28, 2025 at 12:23 PM
Reposted by Ben 🦠
Big news from the Demirer lab: first 4 research papers are preprinted! Check them out, feedback welcomed:

eCIS for plant protein delivery: tinyurl.com/mrx4d878
R2 for targeted insertion: tinyurl.com/5n73za6h
Transient expression: tinyurl.com/38p2ud6w
Chemotaxis assay: tinyurl.com/3nw9haes

More ⬇️
August 26, 2025 at 12:31 PM
"That said, using our custom designed experimental set-up, we found that mosquitoes are drawn to those who avoid unscreen, drink beer, and share their bed. They simply have a taste for the
hedonists among us." Haha !
Blood, sweat, and beers: investigating mosquito biting preferences amidst noise and intoxication in a cross-sectional cohort study at a large music festival https://www.biorxiv.org/content/10.1101/2025.08.21.671470v1
August 26, 2025 at 2:12 PM
Reposted by Ben 🦠
My small contribution to the popularization of evolutionary biology during the #ESEB2025 week, thanks to this article on the evolution of rose breeding in The Conversation France.
If you read French, here it is: theconversation.com/comment-le-c...
If not, our Genetics paper: doi.org/10.1093/gene...
August 21, 2025 at 10:09 PM
Reposted by Ben 🦠
Uncovering Cas9 PAM diversity through metagenomic mining and machine learning https://www.biorxiv.org/content/10.1101/2025.08.13.668647v1
August 13, 2025 at 10:03 PM
Reposted by Ben 🦠
Happy to share the new article from my former lab at IBMCP — the final chapter of my PhD!
We optimized geminivirus-based vectors for the controlled expression of recombinant proteins in plants, using autobioluminescence as a real-time reporter 💡🧬🌱

If you’re curious… 👀:
pubs.acs.org/doi/full/10....
August 7, 2025 at 7:18 PM
Reposted by Ben 🦠
RFK Jr. Mandates All Americans Drink Mysterious Glowing Liquid
RFK Jr. Mandates All Americans Drink Mysterious Glowing Liquid
WASHINGTON—Claiming the luminous potion would make the nation strong and vigorous, Health and Human Services Secretary Robert F. Kennedy Jr. issued an order Friday directing all Americans to drink a m...
theonion.com
August 12, 2025 at 3:59 PM