Irena Feng
@irenafeng.bsky.social
56 followers 150 following 12 posts
studying neuronal vulnerability in Alzheimer's using cell culture with @jproussa.bsky.social 🧠🧫🧪 • UChicago '19 ➡️ BU MD/PhD candidate + ADRC REC scholar • she/her 🏳️‍🌈
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irenafeng.bsky.social
And that's a wrap on #KSNeurodegen25! It was so fun chatting with people about my poster, making new friends, and enjoying the scenery and weather 🤩 Thanks to @keystonesymposia.bsky.social for hosting this conference (and for my brand-new coaster from winning musical bingo!!!)
me at my poster, which is blurred out view from the village a little river in the park my reward for winning musical bingo: a coaster that says Whistler, Canada with a picture of the Whistler Mountain Inukshuk
Reposted by Irena Feng
plasmidsaurus.bsky.social
🦖 Something HUGE just hatched.

Plasmidsaurus now offers RNA sequencing for gene expression analysis:
• As fast as 3 day turnaround
• $50/sample for academia, $80 for industry
• Up to ~10M unique transcript 3’ end reads per sample
• Interactive results

Explore Plasmidsaurus RNA-Seq today.
Reposted by Irena Feng
alzassociation.bsky.social
The FDA has cleared the first blood test for Alzheimer’s for use in primary care settings to rule out the presence of amyloid.

“This is another important step toward expanding access to Alzheimer’s diagnostic tools." -Joanne Pike, Association president & CEO

Read our full statement: bit.ly/4oh3Tiu
Alzheimer’s Association Welcomes FDA Clearance of First Blood Test for Use in Primary Care to Rule Out Alzheimer’s-Related Amyloid Pathology
Developed by Roche, this is the first blood test for use in primary care to rule out Alzheimer's-related amyloid pathology.
www.alz.org
Reposted by Irena Feng
lizneeley.bsky.social
The specifics of the RIFs I’ve seen in group chats have been staggering. Bracing & reminding myself these are specifically intended to cause fear & distress.

Please share URLs for any good trackers you seen as they emerge. (I want more than OMB’s version) fedscoop.com/trump-federa...
Table of how many federal employees have been laid off in the latest RIF (Reduction in Force). This is from an OMB legal filing from Oct 10. For each agency, it lists number of fired employees, RIF notice date, and whether the administrations has recalled any of those employees to do work. Total headcount is 4,100 across 8 agencies. Treasury (1446) and HHS (1200) are the most affected. EPA (30) had the fewest layoffs this time.
Reposted by Irena Feng
angierasmussen.bsky.social
I don’t know who needs to hear this but the CDC is being eviscerated right now. America is not going to have any kind of outbreak response capacity after tonight. Americans’ health data is no longer secure. Say goodbye to federal public health in any capacity. It’s a disaster. We won’t recover.
irenafeng.bsky.social
Fruit flies are lowkey responsible for the field of behavioral genetics as we know it now!
Reposted by Irena Feng
montereybayaquarium.org
Happy World Cephalopod Day! 🐙This sucker for adventure feels its way through the world!

With thousands of chemical receptors and millions of texture receptors packed into each sucker, the giant Pacific octopus has a real sense for exploration.
A red-colored giant Pacific octopus with one eye poking out from its body while stretching out its arms, and showing off its white, round suckers
Reposted by Irena Feng
jeremymberg.bsky.social
I have been trying to get this published as an op-ed, but I am going to post it here since I think it is timely in light of the "consent" extortion events.

Deafening Quiet from the Scientific Establishment

jeremymberg.github.io/jeremyberg.g...

1/14
jeremymberg.github.io
Reposted by Irena Feng
science.org
In a new Science study, researchers show that lysosomes, degradative organelles activated by food limitation, stimulate epigenetic changes that contribute to transgenerational longevity in C. elegans.

📄: https://scim.ag/4gOlR9N
#SciencePerspective: https://scim.ag/3IOqNyH
From lysosome to longevity: Overexpression of the lysosomal lipase LIPL-4 in Caenorhabditiselegans results in methylation of lysine 79 on histone H3 (H3K79),which increases transcription of the gene encoding histone variantHIS-71. HIS-71 is shuttled from intestine to oocytes through association with yolk particles. On arrival, it is methylated and becomes associated with germ line DNA. These events promote longevity in wild-type descendants for several generations.
Reposted by Irena Feng
greenrat.bsky.social
Neat trick if you polycolonal ab's suck. Incubate them with fixed cells with a KO of your protein of interest, then spin. Protocol here: www.med.upenn.edu/markslab/ass...
I was amazed how well it worked on first try (I'm sure that I can completely eliminate unspecific bands)
#WesternBlot #cellsky
On the left - western blot of B16F10 cells wt and KO for CDK8. Our in house produced antibodies give a lot of unspecific bands. On the right same probes with antibodies preincubated with fixed CDK8 KO cells - there is a specific band and faint unspecific bands, which can be probably eliminated with increase of amount of KO cells.
Reposted by Irena Feng
isabelscst.bsky.social
Thrilled to share that our paper “Molecular hallmarks of excitatory and inhibitory neuronal resilience to Alzheimer’s disease” is now out in Molecular Neurodegeneration!

👉 link.springer.com/article/10.1...

#Alzheimer #Resilience #Neuroscience
Molecular hallmarks of excitatory and inhibitory neuronal resilience to Alzheimer’s disease - Molecular Neurodegeneration
Background A significant proportion of individuals maintain cognition despite extensive Alzheimer’s disease (AD) pathology, known as cognitive resilience. Understanding the molecular mechanisms that protect these individuals could reveal therapeutic targets for AD. Methods This study defines molecular and cellular signatures of cognitive resilience by integrating bulk RNA and single-cell transcriptomic data with genetics across multiple brain regions. We analyzed data from the Religious Order Study and the Rush Memory and Aging Project (ROSMAP), including bulk RNA sequencing (n = 631 individuals) and multiregional single-nucleus RNA sequencing (n = 48 individuals). Subjects were categorized into AD, resilient, and control based on β-amyloid and tau pathology, and cognitive status. We identified and prioritized protected cell populations using whole-genome sequencing-derived genetic variants, transcriptomic profiling, and cellular composition. Results Transcriptomics and polygenic risk analysis position resilience as an intermediate AD state. Only GFAP and KLF4 expression distinguished resilience from controls at tissue level, whereas differential expression of genes involved in nucleic acid metabolism and signaling differentiated AD and resilient brains. At the cellular level, resilience was characterized by broad downregulation of LINGO1 expression and reorganization of chaperone pathways, specifically downregulation of Hsp90 and upregulation of Hsp40, Hsp70, and Hsp110 families in excitatory neurons. MEF2C, ATP8B1, and RELN emerged as key markers of resilient neurons. Excitatory neuronal subtypes in the entorhinal cortex (ATP8B+ and MEF2Chigh) exhibited unique resilience signaling through activation of neurotrophin (BDNF-NTRK2, modulated by LINGO1) and angiopoietin (ANGPT2-TEK) pathways. MEF2C+ inhibitory neurons were over-represented in resilient brains, and the expression of genes associated with rare genetic variants revealed vulnerable somatostatin (SST) cortical interneurons that survive in AD resilience. The maintenance of excitatory-inhibitory balance emerges as a key characteristic of resilience. Conclusions We have defined molecular and cellular hallmarks of cognitive resilience, an intermediate state in the AD continuum. Resilience mechanisms include preserved neuronal function, balanced network activity, and activation of neurotrophic survival signaling. Specific excitatory neuronal populations appear to play a central role in mediating cognitive resilience, while a subset of vulnerable interneurons likely provides compensation against AD-associated hyperexcitability. This study offers a framework to leverage natural protective mechanisms to mitigate neurodegeneration and preserve cognition in AD.
link.springer.com
Reposted by Irena Feng
jeremymberg.bsky.social
The fiscal year is over.

So how was the NIH appropriation committed?

A long thread with institute by institute results about where the money went.
a white cat is sitting on a box with the words where written on it .
ALT: a white cat is sitting on a box with the words where written on it .
media.tenor.com
Reposted by Irena Feng
lucas.farnunglab.com
New week, new tool: Find our Protein Domain Designer tool to generate publication-ready protein domain diagrams here: domaindesigner.farnunglab.com
Protein Domain Designer tool for the generation of publication-ready protein domain diagrams
Reposted by Irena Feng
joshuasweitz.bsky.social
NSF GRFP is out 2.5 months late w/key changes

1. 2nd year graduate students not eligible.

2. "alignment with Administration priorities"

3. Unlike prior years, they DO NOT specify the expected number of awards... that is a BIG problem.

a brief 🧵 w/receipts

www.nsf.gov/funding/oppo...
NSF Graduate Research Fellowship Program (GRFP)
www.nsf.gov
Reposted by Irena Feng
hhmijanelia.bsky.social
🪱New research from the Wang Lab shows how changes in a worm’s lysosomes promoting longevity are transferred to its offspring through the epigenome, revealing how epigenetic modifications that help organisms cope with environmental stress can be inherited.

🔗 www.janelia.org/news/leaving...
Leaving a mark: New research shows how longevity is inherited across generations
New research from the Wang Lab reveals a novel connection between lysosomes & the epigenome and provides new insights into how lysosomes regulate longevity over generations & drive the histone-based t...
www.janelia.org
irenafeng.bsky.social
this quiz and the Monterey Bay Aquarium's sea otter cam bring me such joy 🥰
quiz results for which sea otter are you?

You're Rosa!

Rosa was an amazing combination of tough cookie and classy lady. She reigned over our sea otter exhibit and kept everyone in check. Though we sadly lost our beloved Rosa in June 2024, she still holds the undisputed title of our most successful surrogate mom-she raised 15 pups!

As a "Rosa," you're wise, confident, and endlessly loving. You're most likely the one in your friend group that makes sure everyone gets home safe and has eaten enough that day. Enjoy your midday nap you've earned it!
Reposted by Irena Feng
boehninglab.com
A single brain infusion of miRNA targeting CAG repeats slows the progression of Huntington's disease by 75% in patients. This is something that I never thought I would see in my lifetime. www.uniqure.com/investors-me...
Reposted by Irena Feng
standupforscience.bsky.social
FACT CHECK: Acetaminophen (Tylenol) has no credible link with autism. Tylenol is the leading option to combat dangerous fevers during pregnancy — fearmongering around tried and tested medicine puts pregnant people and children at risk. #impeachthequack
Reposted by Irena Feng
johntngo.bsky.social
🚀 Our new paper is out @natmethods.nature.com!

Kuffer & Marzilli engineered conditionally stable MS2 & PP7 coat proteins (dMCP & dPCP) that degrade unless bound to RNA, enabling ultra–low-background, single-mRNA imaging in live cells.

🔗 www.nature.com/articles/s41...
🧬 www.addgene.org/John_Ngo/
irenafeng.bsky.social
Beautiful views of the Charles from the BU MD-PhD program's annual retreat, hosted this year in @bucds.bsky.social @bumedicine.bsky.social
the Charles river in Boston from high up; the sky is blue without a single cloud in sight floor to ceiling windows facing the Charles river, sunlight slanting in over hardwood floors
Reposted by Irena Feng
labliston.bsky.social
For our #flowcytometry peeps, would you like to have a single fix/perm protocol that is optimised for everything? One that preserves fluorophores while allowing simultaneous TF and cytokine staining? How about 100-fold cheaper?

You got it:
currentprotocols.onlinelibrary.wiley.com/doi/10.1002/...
currentprotocols.onlinelibrary.wiley.com