Jakub Ruszkowski
jruszkowski.bsky.social
Jakub Ruszkowski
@jruszkowski.bsky.social
MD, PhD. Internal medicine specialist, nephrology trainee. Passionate about pathophysiology, immunology, statistics, and evidence synthesis.
Reposted by Jakub Ruszkowski
Summary #GlomCon
September 23, 2025 at 9:32 PM
Reposted by Jakub Ruszkowski
In the PISCES trial involving participants receiving hemodialysis, fish oil (n−3 fatty acids) was compared with corn-oil placebo. The rate of serious cardiovascular events was lower with daily fish-oil supplementation. Full trial results: nej.md/49zWuqo

@asnkidney.bsky.social | #KidneyWk
November 7, 2025 at 4:36 PM
Reposted by Jakub Ruszkowski
The latest empadata dump: @nephroseeker.medsky.social writes up a #NephJC short on the meta analysis

www.nephjc.com/news/2025/10...
Empagliflozin, the kidney, and what we still don’t understand — NephJC
NephJC short on an empagliflozin meta-analysis
www.nephjc.com
October 21, 2025 at 12:03 AM
Seeking collaboration with #MedLibs for scoping review on predictive models in peritoneal dialysis!
Protocol nearly finalized. Looking for expertise in search strategy peer-review (PRESS checklist) + optional database searches/deduplication.
DM if interested in co-authorship for this project!
August 20, 2025 at 6:26 PM
Reposted by Jakub Ruszkowski
Lots of different ways to do observational causal inference—IV, proximal inference, etc. What if you could compare those strategies more directly?

New preprint w/ @melodyyhuang.bsky.social tries to do just that. Here's one cool figure—we're able to visualize bias of 3 estimators on the same plot
August 1, 2025 at 4:59 PM
"It remains important to consider bromism in patients presenting with new neurologic, psychiatric, and/or dermatologic symptoms, as well as hyperchloremia
with a negative anion gap." (...) Elevated levels of halides such as bromide falsely increase chloride reading.
epic case 🤯

man trying to eat a better diet asks ChatGPT how to eliminate chloride, it advises him to use *bromide* instead

he buys NaBromide from the internet

develops bromism (with psychosis)

key diagnostic clue = negative anion gap!

(more on low anion gap emcrit.org/ibcc/agma/#l...) #EMIMCC
August 13, 2025 at 2:46 PM
Reposted by Jakub Ruszkowski
Urine sodium (Urine Na) levels post-saline infusion in differentiating non-edematous hyponatremia ca. 2025
#Nephpearls #NephSky

👉🏼 pubmed.ncbi.nlm.nih.gov/40775013/
August 10, 2025 at 6:45 PM
Reposted by Jakub Ruszkowski
#statstab #390 modelbased: An R package to make the most out of
your statistical models through marginal means,
marginal effects, and model predictions

Thoughts: Great package for getting predicted probabilities for your models.

#rstats #r #easystats

doi.org/10.21105/jos...
modelbased: An R package to make the most out of your statistical models through marginal means, marginal effects, and model predictions
Makowski et al., (2025). modelbased: An R package to make the most out of your statistical models through marginal means, marginal effects, and model predictions. Journal of Open Source Software, 10(1...
doi.org
July 18, 2025 at 6:21 PM
Reposted by Jakub Ruszkowski
The Double-Icodextrin Dose Randomized Controlled Trial of a Double #Icodextrin Dose for #Older Patients on Incremental Continuous Ambulatory Peritoneal Dialysis #CAPD

#VisualAbstract by @md_abdulqader83

www.kireports.org/ar...

@lobbedezt.bsky.social @clemencebechade.bsky.social
July 18, 2025 at 3:00 PM
Reposted by Jakub Ruszkowski
The "reproducibility crisis" in science constantly makes headlines. Repro efforts are often limited. What if you could assess reproducibility of an entire field?

That's what @brunolemaitre.bsky.social et al. have done. Fly immunity is highly replicable & offers lessons for #metascience

A 🧵 1/n
July 10, 2025 at 8:23 AM
Reposted by Jakub Ruszkowski
Using robcov() to adjust for donor-level clustering in kidney transplant outcomes?
I am doing a study to assess the association between transplant factors and kidney transplant outcomes (specifically survival of the transplanted kidney) using US registry data. I’m using `cph()`. A key issue is that when looking at outcomes, most recipients are not truly independent as they are clustered by donor. Specifically, in our analysis we have 57,153 donors where both kidneys were transplanted (into different recipients) and 39,389 donors where only one kidney was transplanted into a single recipient. So our analysis on recipient outcomes has n=153,695 recipients, and 96,542 donor clusters (each of which has either 1 or 2 recipients). The focus of the research study is to assess if how the kidney was preserved impacts on kidney graft survival, and I adjust for several donor and recipient factors in the model. This is how I am currently using robcov to get cluster robust SE (from which I am calculating 95% confidence intervals) fit <- cph(Surv(time, event) ~ var1 + var2 + var3, data, x = TRUE, y = TRUE) fit_robust <- robcov(fit, cluster = data$donor_id) My understanding is that this uses the Huber-White method for updating the variance-covariance, which will increase the variance due to the clustering. I’ve seen other papers in the field use frailty terms (or other mixed effect models for non-survival outcomes). However, I think that robust SE using `robcov()` is probably a better solution here. Is this a valid approach, given the large number of clusters, but small cluster size (either 2 or 1 per cluster)? Would the same approach be valid for logistic regression and linear (fit with `ols()`)?
discourse.datamethods.org
July 6, 2025 at 10:04 AM
Reposted by Jakub Ruszkowski
[Skim] KI-Tools für die wissenschaftliche Literaturrecherche: Potenziale, Problematiken, Didaktik und Zukunftsperspektiven www.degruyterbrill.com/document/doi... - or AI Tools for Academic Literature Search: Possibilities, Problems, Didactics, and Future Prospects insanely comprehensive! (1)
July 6, 2025 at 9:30 AM
Next level of cherry-picking. Lack of significance in Student's t-test? Report then F-test and interpret it as a t-test 🫣🫣🫣

(F-test compares variances, not means🤡)

Source: doi.org/10.3390/cell...
July 1, 2025 at 6:29 PM
Reposted by Jakub Ruszkowski
#Statistics thought of the day: Need power calculations for a 2-group comparison on an ordinal or continuous response variable Y with/without clumping at a specific value (e.g., 0) of Y, with a possibly bimodal, heavy tailed, or skewed distribution? See www.fharrell.com/post/pop/ #RStats #StatsSky
Proportional Odds Model Power Calculations for Ordinal and Mixed Ordinal/Continuous Outcomes – Statistical Thinking
This article has detailed examples with complete R code for computing frequentist power for ordinal, continuous, and mixed ordinal/continuous outcomes in two-group comparisons with equal sample sizes....
www.fharrell.com
June 23, 2025 at 2:30 PM
HYPOMAGNESEMIA IN CKD - Renal Magnesium Wasting

While CKD typically causes hypermagnesemia due to ↓GFR, researchers from Osaka University found that ~15% of CKD patients paradoxically develop hypomagnesemia instead.
academic.oup.com/ndt/article/...
🧵1/3

#NephSky #Nephrology
Validate User
academic.oup.com
June 21, 2025 at 8:13 AM
Reposted by Jakub Ruszkowski
A Review published in the Journal of Translational Medicine gives an overview of the current state of research using human-to-animal fecal microbiota transplantation to elucidate the role of the gut microbiota in the pathophysiology of noninfectious diseases and traits.

#MedSky
Fecal microbiota transplantation from patients into animals to establish human microbiota-associated animal models: a scoping review
Journal of Translational Medicine
bit.ly
June 20, 2025 at 2:30 PM
We just published the largest scoping review on fecal microbiota transplantation (FMT) from human patients to animals! Our team analyzed 489 studies that tried to go beyond showing CORRELATIONS between gut bacteria and disease, and focused on FMT from patients to animals to prove causality! 🔬

🔎1/5
Fecal microbiota transplantation from patients into animals to establish human microbiota-associated animal models: a scoping review - Journal of Translational Medicine
Background Fecal microbiota transplantation (FMT) from humans with specific medical conditions to animal models can demonstrate causality by inducing or exacerbating pathophenotypes, linking the gut m...
doi.org
June 17, 2025 at 4:46 PM
Reposted by Jakub Ruszkowski
#statstab #363 p-checker The one-for-all p-value analyzer

Thoughts: Easy way to check for publication bias using some current tools.

#shiny #pvalue #phacking #QRPs #zcurve #bias #pcurve #rindex

shinyapps.org/apps/p-check...
Experience Statistics
shinyapps.org
June 11, 2025 at 3:37 PM
"Maternally inherited diabetes and deafness is one of the most common mitochondrial diseases. (...) In all three cases, the symptoms were similar: diabetic patient, with hearing loss and renal involvement, non-nephrotic proteinuria and sediment without microhaematuria."
When should a Nephrologist suspect a mitochondrial disease? | Nefrología
Mitochondrial diseases, taking into account those that affect the processes of the respiratory
revistanefrologia.com
June 10, 2025 at 6:46 PM
Reposted by Jakub Ruszkowski
BakRep – a searchable large-scale web repository for bacterial genomes, characterizations and metadata www.microbiologyresearch.org/content/jour... 🧬🖥️ Nextflow code: github.com/ag-computati...
June 4, 2025 at 8:03 PM
Tenofovir-induced tubulopathy can be avoided by using tenofovir alafenamide instead of tenofovir disoproxil fumarate. I would gladly offer it to my patients with chronic hepatitis B, but unfortunately, in Poland, this formulation is available only in combination with other drugs for HIV.
Recovery of Tenofovir-induced Nephrotoxicity following Switch from Tenofovir Disoproxil Fumarate to Tenofovir Alafenamide in Human Immunodeficiency Virus-Positive Patients - PubMed
Tenofovir-induced nephrotoxicity in HIV-positive patients receiving TDF was mostly reversible after changing to TAF. Thus, TAF-containing regimens can be administered safely to HIV-positive patients w...
pubmed.ncbi.nlm.nih.gov
June 3, 2025 at 3:45 PM
Alport-like syndrome with thrombocytopenia? Think about MYH9-related disorders (Epstein syndrome, Fechtner syndrome, May–Hegglin anomaly, and Sebastian syndrome). MYH9 is the gene encoding nonmuscle myosin IIA.

link.springer.com/article/10.1...
Hearing loss and renal syndromes - Pediatric Nephrology
The association between ear and kidney abnormalities has long been recognized; however, the connection between these two disparate organs is not always straightforward. Although Alport syndrome is the...
link.springer.com
June 3, 2025 at 11:45 AM
Reposted by Jakub Ruszkowski
Pathophysiology of various MGRS lesions:
By Dr. Nasr at @glomcon.org
May 25, 2025 at 4:02 PM
Reposted by Jakub Ruszkowski
In case you missed it, we recently updated some of our packages, including many new features (again) in the #rstats #easystats {modelbased} package:
easystats.github.io/modelbased/n...
The last weeks we were working a lot on improving support and performance for Bayesian models and especially
Changelog
easystats.github.io
May 15, 2025 at 6:10 PM
Reposted by Jakub Ruszkowski
#statstab #343 Interpreting Log Transformations in a Linear Model

Thoughts: Not always a good idea to transform data, but if you do you need to know what it means.

#log #transformation #datatype #data #model #nonlinear #r #guide

library.virginia.edu/data/article...
Interpreting Log Transformations in a Linear Model | UVA LibraryFederal Depository Library Program
library.virginia.edu
May 14, 2025 at 8:44 PM