Ben Doughty
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Ben Doughty
@doughty-ben.bsky.social
Exploring how hyaluronan dynamics shape developmental timing, aging, and disease. 💧
OSF: https://osf.io/sd5g4/
Pinned
Here's what I'm thinking:
There’s evidence that fully or partially knocking out TMEM2 / hyaluronidase causes developmental problems, including in the heart. So you can’t just aggressively modify hyaluronan turnover during early development without consequences. I'm thinking - metabolism.
Reposted by Ben Doughty
Not an alien, they have been around here for awhile: Crinoids! #LetsChangeThat
January 20, 2026 at 4:31 PM
An interesting preprint:
"A role for heavy chain-modification in protecting hyaluronan from free radical fragmentation during inflammation."
www.biorxiv.org/content/10.6...
A role for heavy chain-modification in protecting hyaluronan from free radical fragmentation during inflammation
The glycosaminoglycan hyaluronan (HA) is an essential and ubiquitous component of human tissues and biofluids. The only known covalent modification of HA entails the attachment of heavy chains (HC) from the inter-alpha-inhibitor (IαI) family of proteoglycans, forming stable complexes (HC•HA) that arise during inflammation. In some contexts, HC•HA is thought to contribute to pathology, whereas in others it may form part of a protective pathway. However, its exact roles are not fully understood. Here, we report that HC modifications can protect HA from fragmentation by reactive oxygen species (ROS) produced during the inflammatory cascade. Using solid-state nanopore molecular size analysis, we show that HA is highly resistant to degradation from exogenous ROS in vitro when in the context of HC•HA complexes, while the unmodified HA polymer is fragmented rapidly under the same conditions. Experiments performed with admixtures of HA and unbound antioxidant proteins – including HC-bearing components – demonstrate the necessity of covalent HC attachment to the polysaccharide for the protection. Finally, we find that HA with high-HC content from ‘inflammatory’ equine synovial fluid has increased resilience to ROS damage compared to low-HC HA from a healthy joint. Collectively, these results demonstrate that covalent HC modification is an effective biological strategy for preserving HA integrity against ROS fragmentation, including in inflammatory conditions. ### Competing Interest Statement ARH and PLD are listed as inventors on a patent covering the nanopore size analysis approach. All other authors declare no competing interests. National Institutes of Health, 5R01GM134226-06, P41EB020594 Arthritis Research UK, 22277 Wellcome Trust, 203128/Z/16/Z, 220926/Z/20/Z, 304200/Z/23/Z
www.biorxiv.org
January 21, 2026 at 2:45 AM
A possible metabolic link is substrate availability: high glucose increases the sugars needed to make hyaluronan. In insulin-resistant states, more glucose is diverted into pathways like hexosamine biosynthesis pathway, expanding UDP-sugar pools used for HA. HA accumulation is reported in diabetes.
Here's what I'm thinking:
There’s evidence that fully or partially knocking out TMEM2 / hyaluronidase causes developmental problems, including in the heart. So you can’t just aggressively modify hyaluronan turnover during early development without consequences. I'm thinking - metabolism.
January 15, 2026 at 9:05 PM
What's interesting is that hydrogen peroxide can easily travel out into the ECM. It's also produced and released by immune cells during inflammation. On its own, hydrogen peroxide isn't very effective at breaking down hyaluronan.
January 6, 2026 at 1:30 AM
Reposted by Ben Doughty
Here's what I'm thinking:
There’s evidence that fully or partially knocking out TMEM2 / hyaluronidase causes developmental problems, including in the heart. So you can’t just aggressively modify hyaluronan turnover during early development without consequences. I'm thinking - metabolism.
December 30, 2025 at 8:57 PM
Reposted by Ben Doughty
Modern biology research is biased towards investigating genes that are widely conserved and present in humans. What about genes that ARE widely conserved but NOT present in humans? Can genes missing from humans tell us something about what makes our biology different from that of other animals? 1/8
December 31, 2025 at 7:29 PM
Here's what I'm thinking:
There’s evidence that fully or partially knocking out TMEM2 / hyaluronidase causes developmental problems, including in the heart. So you can’t just aggressively modify hyaluronan turnover during early development without consequences. I'm thinking - metabolism.
December 30, 2025 at 8:57 PM
Regenerate Hyaluronan:
Prime tissue with HA precursors (UDP-sugars), then apply a brief HIF-2α–leaning pseudohypoxic pulse under low-ROS conditions without drifting into HIF-1α. Repeat.
Possible?
December 29, 2025 at 9:34 AM
Extracellular matrix proteolysis maintains synapse plasticity during brain development.
Seems Hyaluronan turnover would be required for plasticity

www.nature.com/articles/s41...
Extracellular matrix proteolysis maintains synapse plasticity during brain development - Nature Neuroscience
This study demonstrates that the extracellular matrix (ECM) of the developing brain stabilizes recently born synapses. The authors identify a microglial metalloprotease that digests the ECM to increas...
www.nature.com
December 23, 2025 at 11:00 PM
Surely the boomers have noticed..
December 22, 2025 at 8:16 PM
Speculative idea:
Sulforaphane helps protect CD44, reducing HA breakdown and receptor shedding + activates NRF2
Starch-heavy diets push glycolysis, supplying substrate to make long chains
I can imagine a previous human with rock hard skin, we would look like babies in comparison
December 20, 2025 at 6:47 PM
Reposted by Ben Doughty
20 years ago, Aaron Osgood-Zimmerman and I would entertain ourselves asking questions like, "How many crickets are in field?" or "How many cells are in the body?"

Aaron became a statistician, and I become a biologist.

We have now collaborated on an interesting exploration: doi.org/10.64898/202...
December 15, 2025 at 1:49 PM
I didn’t realize the retina has PNN-like ECM components. Visual development also shifts through childhood toward more stable foveal-detail processing. Makes me wonder: if humans evolved extended neoteny, would that prolong global-dominant perception?
December 15, 2025 at 8:02 PM
From 2021, It would be fascinating to see whether a partial reduction in HA degradation shifts neural crest migration efficiency or timing.

The cell surface hyaluronidase TMEM2 plays an essential role in mouse neural crest cell development and survival
www.biorxiv.org/content/10.1...
The cell surface hyaluronidase TMEM2 plays an essential role in mouse neural crest cell development and survival
Neural crest cells (NCCs) are a migratory population that gives rise to a diverse cell lineage, including the craniofacial complex, the peripheral nervous system, and a part of the heart. Hyaluronan (...
www.biorxiv.org
December 12, 2025 at 11:56 PM
ECM mechanics can regulate gene activity through mechanoenhancers
Mechanoenhancers are key regulators of how cells translate mechanical cues into gene activity and functional behaviors @science.org @dukeu.bsky.social @cgersbach.bsky.social
www.science.org/doi/10.1126/...
December 12, 2025 at 7:50 AM
Reposted by Ben Doughty
Super excited to share this new story led by @jedziabis.bsky.social where she defines a critical role for microglial innate immune signaling in PV cell and perineuronal net (PNN) development in hippocampus, and consequences for plasticity and behavior in adulthood www.biorxiv.org/content/10.6...
Microglial MyD88-dependent signaling influences extracellular matrix development and interneuron maturation in the hippocampus
Parvalbumin interneurons (PVIs) are disrupted across diverse neurodevelopmental disorders, highlighting their vulnerability to developmental perturbations. Inflammation can perturb PVI development and...
www.biorxiv.org
December 11, 2025 at 4:03 PM
From what I can gather Hyaluronan turnover changes massively across life:

Embryo: HA turns over in hours
Fetus: slows to hours–days
Postnatal: slows further to days–weeks
Late teens/20's: peak
Aging: creation slows, degradation speeds up - body gradually “dries out”.

Slow it down just a little..
December 9, 2025 at 10:32 PM
Could LMW-HA signalling influence pruning or the timing of circuit maturation during critical periods?

There’s scattered evidence that low-molecular-weight hyaluronan activates TLR2/4, and that TLR2/4 signalling shapes microglial activity.
Any experts?
December 9, 2025 at 6:44 AM
We associate hyaluronan + glycolysis with cancer, yet they’re essential for wound healing.
If glycolysis drives long HA and long HA stabilizes tissue, then paradoxically glycolysis + HA might be protective, not carcinogenic?
December 8, 2025 at 9:41 PM
Here’s the idea I’m exploring:
Many species that evolve to be more social or less aggressive also show neoteny — they keep youthful traits for longer.
Not just in appearance, but in the brain: plasticity, longer learning windows, emotional sensitivity.
December 7, 2025 at 2:02 AM