Vivek Mutalik
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vivekmutalik.bsky.social
Vivek Mutalik
@vivekmutalik.bsky.social
Dad, Teacher, Artist, Gardener and Scientist.

Change is permanent. This moment will pass. It has to.

Ps.
All I post is my personal opinion, in my personal times, using my personal tools, not my employers.
Pinned
📣 New preprint from us at phagefoundry.org 📣
A solid machine learning framework & to predict strain-level phage-host interactions across diverse bacterial genera from genome sequences alone. Avery Noonan from the Arkin Lab led this massive effort
www.biorxiv.org/content/10.1...
Phage Foundry
phagefoundry.org
Had such a great time with @jayhinton.bsky.social strolling around Liverpool, discussing science &life, visiting Hinton Lab & other microbiology labs at Liverpool
November 29, 2025 at 9:25 AM
Reposted by Vivek Mutalik
The ecological roles of bacterial #immune systems are poorly understood. Rafael Custodio @ellinoralseth.bsky.social @brockhurstlab.bsky.social @brownlab.bsky.social & Edze Westra explore how mobile genetic elements and bacterial defenses shape #microbiome structure and function 🧪
Bacterial immune systems as causes and consequences of microbiome structure
Bacterial immune systems have evolved in response to diverse molecular "parasites", yet their ecological roles remain poorly understood. This Essay explores how interactions between mobile genetic…
plos.io
November 24, 2025 at 5:30 PM
Reposted by Vivek Mutalik
Capsule diversity limits #phage host range by affecting receptor-binding protein (RBP) interactions in capsulated #bacteria. @pilardomingoc.bsky.social &co show that generalist phages evolve host range via RBP mutation & recombination, but specialists remain stable @plosbiology.org 🧪 plos.io/48nvOqY
November 28, 2025 at 1:58 PM
Wow!!
Such a 😎 meeting #MicroEvo25
Met so many old friends & made new ones.

microbiologysociety.org/event/societ...
November 27, 2025 at 8:55 PM
Reposted by Vivek Mutalik
🚨#PhD studentship opportunity! Plasmids provide bacteria with antimicrobial resistance, but do they have more fundamental effects on behaviour? 🧫🦠💫🧟‍♂️

Apply for a 4y funded MRC DiMeN position with me and Jamie Wheeler @livuni-ives.bsky.social www.findaphd.com/phds/project...
MRC DiMeN Doctoral Training Partnership: Resistant zombies: how drug-resistance plasmids manipulate the behaviour of the opportunistic pathogen Pseudomonas aeruginosa at University of Liverpool on Fin...
PhD Project - MRC DiMeN Doctoral Training Partnership: Resistant zombies: how drug-resistance plasmids manipulate the behaviour of the opportunistic pathogen Pseudomonas aeruginosa at University of Li...
www.findaphd.com
November 18, 2025 at 9:38 AM
Reposted by Vivek Mutalik
Ten days left to apply to be a @crick.ac.uk Early Career Group Leader

Closing date 27th November

www.crick.ac.uk/careers-stud...
November 17, 2025 at 11:55 AM
Reposted by Vivek Mutalik
I am very excited to announce that a fully funded PhD position is available in my group.

Topic: Synergistic coevolution in mono-specific and multi-species microbial consortia

Please RT or forward this information to interested candidates.

Deadline: 11.01.26

More info:

shorturl.at/f1TuF
November 27, 2025 at 2:24 PM
Strolling at night, in Liverpool, after science talks ->

microbiologysociety.org/event/full-e...
November 27, 2025 at 7:34 AM
If you are interested in doing HT genetics, & building genetic screening tools and workflows, and looking for someone who’s meticulous and expert, hire Robin. He’s awesome
More exciting news! I'm finishing my PhD in plant biology from @ucberkeleyofficial.bsky.social this December and am looking for #postdoc positions starting in early 2026!
November 26, 2025 at 11:30 PM
Really pleased to share the first paper to come out of the lab.
We found that hospital patients were frequently colonised with P. aeruginosa and that the same clone was shared between the gut and the lung.
The phylogenies indicate that the clones moved from lung->gut

www.nature.com/articles/s41...
High frequency body site translocation of nosocomial Pseudomonas aeruginosa - Nature Communications
Here, the authors report within-host diversity and body site translocation dynamics in hospital samples of Pseudomonas aeruginosa and reveal that body site sharing was likely due to within-patient tra...
www.nature.com
November 26, 2025 at 11:16 PM
Reposted by Vivek Mutalik
#microsky #phagesky #phage

Anyone who’s tried deleting prophages in the lab by HR knows the difficulties of the task. Here we have an example of how HR-mediated natural transformation might hit the same hurdle in a more native context.

academic.oup.com/mbe/article/...
Chromosomal Curing Drives an Arms Race Between Bacterial Transformation and Prophage
Abstract. Transformation occurs when bacteria import exogenous DNA via the competence machinery and integrate it into their genome through homologous recom
academic.oup.com
November 23, 2025 at 4:39 PM
Reposted by Vivek Mutalik
Pleased to share our recent article in PNAS - a collaboration with @jessicaandreani.bsky.social & Pablo Radicella, with important roles played by many members of each team.

A tripartite protein complex promotes DNA transport during natural transformation in Firmicutes www.pnas.org/doi/10.1073/...
A tripartite protein complex promotes DNA transport during natural transformation in Firmicutes | PNAS
Natural genetic transformation is a conserved mechanism of bacterial horizontal gene transfer, which is directed entirely by the recipient cell and...
www.pnas.org
November 26, 2025 at 8:27 AM
Reposted by Vivek Mutalik
Now properly published at @natcomms.nature.com with few additional experiments incl. demonstration of Daptomycin's ability to depolarise non-growing cells.
See the original preprint-thread for a summary of our findings.
www.nature.com/articles/s41...
#microsky
November 24, 2025 at 8:20 PM
#microsky 🎊🎉

High resolution lineage tracking tech from Robin & Adam D team from Berkeley! 🙌

We have used this for phage-host interaction work too in the forthcoming preprint.
November 25, 2025 at 10:52 PM
😮🤯
So happy to announce our new preprint, “A geothermal amoeba sets a new upper temperature limit for eukaryotes.” We cultured a novel amoeba from Lassen Volcanic NP (CA, USA) that divides at 63°C (145°F) 🔥 - a new record for euk growth!
#protistsonsky 🧵
November 25, 2025 at 10:45 PM
Reposted by Vivek Mutalik
Excited to share our new study! Great fun working again with my good friend @stephenrgarrett.bsky.social — always a highlight! Huge thanks to fantastic co-authors @samkaytucker.bsky.social, @drandyjroe.bsky.social and our star technician Vojtech Pavelka. academic.oup.com/nargab/artic...
November 21, 2025 at 6:27 PM
Reposted by Vivek Mutalik
I started studying phages just over 4 years ago. The project that started it all is finally published. We isolated 6 closely related anti-Acinetobacter phages and showed that they are not capsule-specific and can reduce bacterial load in a rat model. More work still to come on this! #phagesky #IDsky
A bacteriophage genus infects carbapenem resistant Acinetobacter baumannii via a non-capsular receptor and provides protection in vivo
Microbiology; Virology
www.cell.com
November 22, 2025 at 1:11 PM