Dr Dr Oona Snoeyenbos-West
@oonawest.bsky.social
1.8K followers 920 following 160 posts
Research Scientist: University of Arizona, Carini Lab. Co Founder, MycoMine 🍄‍🟫Environmental Microbiologist /Geomicrobiologist, First Gen Scientist 🇺🇸 Manifesting Microbes 🪄🦠🧫🪄💫
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oonawest.bsky.social
Interested in how Fungi are shaping the future of our planet? 🍄 🌍🌎🌏🍄‍🟫Check out the latest “The Future is Fungi podcast”featuring yours truly ! 👇🏻

open.spotify.com/episode/2ddA...
Mycoremediation and Its Fungal Powers with Dr. Oona Snoeyenbos-West
The Future is Fungi · Episode
open.spotify.com
Reposted by Dr Dr Oona Snoeyenbos-West
oborkowski.bsky.social
Global constraint principle for microbial growth laws
doi.org/10.1073/pnas...
oonawest.bsky.social
Understanding of experimental design and hypothesis testing is fundamental & key💡 Otherwise: garbage in, garbage out! An insightful and thought provoking read here! 👇🏻
hormiga.bsky.social
Y'all. I just got ChatGPT to do everything in R for this manuscript. I mean EVERYTHING. And it's all legit and reproducible. I'm shook.

How are we mentoring our trainees in statistics now? Who needs to learn coding in R line by line, and who doesn't?

scienceforeveryone.science/statistics-i...
Statistics in the era of AI
How do we mentor, teach, and do stats when AI can do so much of the work?
scienceforeveryone.science
oonawest.bsky.social
Metal speciation matters! 💡💡💡👇🏻
Reposted by Dr Dr Oona Snoeyenbos-West
daumlab.bsky.social
Out in Science Advances: Our #cryoEM structure of HFTV1, a virus infecting the halophile #archaea. *First full atomic structure (containing all structural proteins) of any tailed virus!* Congrats and thanks to all co-authors and our fantastic collaborators! www.science.org/doi/10.1126/...
Cryo-EM resolves the structure of the archaeal dsDNA virus HFTV1 from head to tail
This structure of an archaeal tailed virus (arTV) provides detailed insights into arTV assembly and infection mechanisms.
www.science.org
Reposted by Dr Dr Oona Snoeyenbos-West
Reposted by Dr Dr Oona Snoeyenbos-West
rachelmwheatley.bsky.social
Is a healthy microbiome one that is rich in phages? 🦠 Excited to share our paper out in Lancet Microbe with @bkoskella.bsky.social & @dholtappels.bsky.social where we test whether virome diversity can be used a broad signature of microbiome health 📈
lancetmicrobe.bsky.social
New research article

Evaluation of bacteriophages as a signature of #microbiome health: a systematic review and meta-analysis

www.thelancet.com/journals/lan...

#IDSky #ClinMicro #ViroSky #Phage #OpenAccess #OA
oonawest.bsky.social
It’s sure is! 🥰
awilddre.bsky.social
Yaay!! Rain in Tucson is amazing. 💚⛈️
Thunder clouds over the mountains. The clouds are illuminated by the sun and are a vibrant yellow orange. The light is reflected in the rainy street.
Reposted by Dr Dr Oona Snoeyenbos-West
sonjadrimmer.bsky.social
People think the first thing Gutenberg printed was the Bible. This is false. The first things he printed were a political prophecy, propaganda about the Turks’ threat to Christendom, & a popular school text. If you want a parallel to AI, that’s it: making $ from conspiracies, racism, & school slop.
Reposted by Dr Dr Oona Snoeyenbos-West
sonjadrimmer.bsky.social
LLM extruded essays are like being cornered by the most boring person at a party while they monotone monologue small talk at you, convinced that they’re pronouncing something profound.
Reposted by Dr Dr Oona Snoeyenbos-West
sonjadrimmer.bsky.social
For the latest issue of Artforum I wrote about the culture of “AI” in my sector of academia, arguing that a focus on what it does distracts attention away from examining the exploitative conditions that the hopeful rhetoric of its promise upholds. www.artforum.com/features/gen...
MACHINE YEARNING
Sonja Drimmer critically examines art historians’ recent embrace of generative AI as a tool for humanities research.
www.artforum.com
Reposted by Dr Dr Oona Snoeyenbos-West
kylegriffin1.bsky.social
Breaking: MIT just became the first university to reject an agreement that would trade support for the Trump admin's higher education agenda in exchange for favorable treatment.

"Fundamentally, the premise of the document is inconsistent with our core belief." www.nytimes.com/2025/10/10/u...
M.I.T. Rejects a White House Offer for Special Funding Treatment
www.nytimes.com
oonawest.bsky.social
An important read! 💡
drfunkyspoon.bsky.social
We’ve all seen a great deal of repetitive slop written about potential existential dangers of AI.
This piece by Stephen Witt does not merely repeat what we’ve already heard but attempts to apply data to the question. Definitely worth reading, and highly concerning.
🧪
www.nytimes.com/2025/10/10/o...
Opinion | The A.I. Prompt That Could End the World
www.nytimes.com
Reposted by Dr Dr Oona Snoeyenbos-West
jcamthrash.bsky.social
Carbon source diversity shapes bacterial interspecies interactions academic.oup.com/ismej/advanc... #jcampubs
Reposted by Dr Dr Oona Snoeyenbos-West
jcamthrash.bsky.social
SAR11 ecotypes across ocean basins change with depth due to changes in light and oxygen academic.oup.com/ismej/advanc... #jcampubs 🌊
Reposted by Dr Dr Oona Snoeyenbos-West
jcamthrash.bsky.social
Automated environmental metagenomics using Oxford nanopore sequencing bmcgenomics.biomedcentral.com/articles/10.... #jcampubs
Automated environmental metagenomics using Oxford nanopore sequencing - BMC Genomics
Background Long-read sequencing has revolutionised metagenomics through improved metagenome assembly, taxonomic classification and functional characterisation. Automation can enhance the throughput, reproducibility, and accuracy of library preparation. However, the validation of automated library preparation protocols remains undetermined for metagenomic workflows, which are particularly sensitive to methodological perturbation. Here, we compare long-read metagenomic sequencing of environmental samples through parallel manual and automated protocols. Results Although automated library preparation led to minor reduction in read and contig lengths, taxonomic classification rate and alpha diversity was slightly higher than manual libraries, including the detection of more rare taxa. Despite this, no significant difference in microbial community structure was identified between manual and automated libraries. Conclusions Despite minor differences in sequencing and classification metrics, automated and manual library preparation resulted in comparable characterization of environmental community metagenomes. These findings demonstrate the suitability of automation for high-throughput long-read metagenomics, with broad applicability to automated long-read sequencing for improved efficiency and reproducibility.
bmcgenomics.biomedcentral.com
Reposted by Dr Dr Oona Snoeyenbos-West
jcamthrash.bsky.social
Extracellular electron transfer in cable bacteria enables growth rates comparable to aerobic respiration www.biorxiv.org/content/10.1... #jcampubs
Reposted by Dr Dr Oona Snoeyenbos-West
coreyspowell.bsky.social
Astronomers have detected a dark blob of...something, billions of light years away. It's as massive as a million Suns & it emits no detectable radiation.

It might be a clump of dark matter, revealing new details about the structure of the invisible universe. 🧪🔭

www.ucdavis.edu/news/astrono...
Left, our best surface brightness model of the 1.7-GHz global VLBI observation used here, which has been reconvolved with the main lobe of the interferometer’s point spread function and added to the residuals (34 μJy per beam r.m.s.). For reference, red contours show the surface brightness at 2.1 μm observed by the W. M. Keck Observatory adaptive optics system30. The positions of two low-mass perturbers are each marked with a black X. The 2 × 108 M⊙ object first detected by ref. 24 is labelled , and the 1.13 × 106 M⊙ detection reported here is labelled . The zoomed-in region shown in the right-hand two panels is indicated by the black square, which has a side length of 60 mas. Top right, detail of the bright arc around , with the colour scale modified to emphasize the gap in the arc produced by the gravitational perturbation of . Bottom right, GI corrections to the lensing convergence (expressed in units of lens-plane surface mass density), showing a compact, positive feature whose position and mass are consistent with the independent parametric modelling results for . The dashed black circle has a radius of 80 pc and the lensed emission is indicated by the black contours.
Reposted by Dr Dr Oona Snoeyenbos-West
drkeithsmith.bsky.social
How can we tell what's inside an #exoplanet? @timlichtenberg.bsky.social et al review how a planet's atmosphere interacts with its interior. Atmospheric observations can distinguish between lava worlds, water worlds, temperate surfaces or supercritical interiors. ☄️
www.science.org/doi/10.1126/...
Reposted by Dr Dr Oona Snoeyenbos-West
profannawatts.bsky.social
Lol the Nobels can't even acknowledge women's contribution to discovery. But sure let's acknowledge The Machines.
Headline from an article in Nature this week that states "Prizes must recognize machine contributions to discovery. The future of science will be written by humans and machines together. Awards should reflect that reality."
Reposted by Dr Dr Oona Snoeyenbos-West
thecovidinfoguy.bsky.social
Brainstem damage found to be behind long-lasting effects of severe Covid-19.

"Using ultra-high-resolution scanners that can see the living brain in fine detail, researchers from the Universities of Cambridge and Oxford were able to observe the damaging effects Covid-19 can have on the brain."
Brainstem damage found to be behind long-lasting effects of severe Covid-19
Damage to the brainstem - the brain's 'control center' - is behind long-lasting physical and psychiatric effects of severe Covid-19 infection, a study suggests.
www.news-medical.net
Reposted by Dr Dr Oona Snoeyenbos-West
danielketter.com
Oh my God is the future really overly long emails with bolded words, bullet points and topical organizing emoji because everybody is using ChatGPT to write emails. Please, people should be embarrassed to do this, shame them.
oonawest.bsky.social
I concur! 😋
msrobinhosking.bsky.social
The humble baked spud with a super crispy skin is one of the finest dishes known to mankind