Gopal Jayaraj
@gopaljayaraj.bsky.social
120 followers
170 following
6 posts
Postdoc @Max Planck Institute Biochemistry
Systems Biology of Proteostasis
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Reposted by Gopal Jayaraj
Reposted by Gopal Jayaraj
Reposted by Gopal Jayaraj
Jordan Ray
@jordanray.bsky.social
· Sep 9
Lysosomal RNA profiling reveals targeting of specific types of RNAs for degradation
Autophagy targets a wide variety of substrates for degradation within lysosomes. While lysosomes are known to possess RNase activity, the role of lysosomal RNA degradation in post-transcriptional gene...
www.biorxiv.org
Reposted by Gopal Jayaraj
Reposted by Gopal Jayaraj
Dan Grabarczyk
@dangrabarczyk.bsky.social
· Aug 27
A split-site E3 ligase mechanism enables ZNFX1 to ubiquitinate and cluster single-stranded RNA into ubiquitin-coated nucleoprotein particles
Grabarczyk et al. show the structure and mechanism of a non-canonical ubiquitin ligase,
which is activated through nucleic-acid-induced oligomerization and is critical for
cell survival during immune ...
www.cell.com
Reposted by Gopal Jayaraj
Reposted by Gopal Jayaraj
Sven Lange
@sven-m-lange.bsky.social
· Aug 20
Reposted by Gopal Jayaraj
Eric Chevet
@ericchevet.bsky.social
· Jul 7
mRNA 3′UTRs chaperone intrinsically disordered regions to control protein activity
More than 2,700 human mRNA 3′UTRs have hundreds of highly conserved (HC) nucleotides, but their biological roles are unclear. Here, we show that mRNAs with HC 3′UTRs mostly encode proteins with long intrinsically disordered regions (IDRs), including MYC, UTX, and JMJD3. These proteins are only fully active when translated from mRNA templates that include their 3′UTRs, raising the possibility of functional interactions between 3′UTRs and IDRs. Rather than affecting protein abundance or localization, we find that HC 3′UTRs control transcriptional or histone demethylase activity through co-translationally determined protein oligomerization states that are kinetically stable. 3′UTR-dependent changes in protein folding require mRNA-IDR interactions, suggesting that mRNAs act as IDR chaperones. These mRNAs are multivalent, a biophysical RNA feature that enables their translation in network-like condensates, which provide favorable folding environments for proteins with long IDRs. These data indicate that the coding sequence is insufficient for the biogenesis of biologically active conformations of IDR-containing proteins and that RNA can catalyze protein folding. ### Competing Interest Statement The authors have declared no competing interest. Pershing Square Foundation, https://ror.org/04tce9s05 G. Harold & Leila Y. Mathers Foundation National Institutes of Health, DP1GM123454, R35GM144046 Memorial Sloan Kettering Cancer Center, https://ror.org/02yrq0923, P30 CA008748
www.biorxiv.org
Reposted by Gopal Jayaraj
Reposted by Gopal Jayaraj
Kurianlab
@kurianlab.bsky.social
· Jun 3
HCR-Proxy resolves site-specific proximal RNA proteomes at subcompartmental nanoscale resolution
The spatial organisation of RNA condensates is fundamental for understanding of basic cellular functions, but may also provide pivotal insights into diseases. One of the major challenges to understand...
www.biorxiv.org
Reposted by Gopal Jayaraj
Reposted by Gopal Jayaraj
Laurenz Rabl
@laurenzrabl.bsky.social
· Apr 1
The nascent polypeptide-associated complex (NAC) as regulatory hub on ribosomes
The correct synthesis of new proteins is essential for maintaining a functional proteome and cell viability. This process is tightly regulated, with ribosomes and associated protein biogenesis factors...
doi.org
Gopal Jayaraj
@gopaljayaraj.bsky.social
· Jan 21
Mechanism of chaperone recruitment and retention on mitochondrial precursors
Nearly all mitochondrial proteins are imported into mitochondria from the cytosol. How nascent mitochondrial precursors acquire and sustain import-competence in the cytosol under normal and stress con...
www.biorxiv.org
Reposted by Gopal Jayaraj
David Balchin
@davidbalchin.bsky.social
· Jan 20
Postdoctoral Fellow - Balchin Lab
Salary for this Role: From £43,210 with benefits, subject to skills and experience Job Title: Postdoctoral Fellow - Balchin Lab Reports to: David Balchin Closing Date: 28/Feb/2025 23.59 GMT Job Descri...
crick.wd3.myworkdayjobs.com
Reposted by Gopal Jayaraj