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cinderbio.bsky.social
CinderBio
@cinderbio.bsky.social
Extreme enzymes for #proteomics and specialty applications. One-step/5-minute digests w/ orthogonal coverage to trypsin; Bias for #membraneproteins. Link to Journal of Proteomics paper (https://c-bio.link/JPBJrW)

Berkeley, CA
CinderBio.com
Pinned
Just over a week to go until #ASMS2025 in Baltimore

Come see posters using CinderBio enzymes on the schedule and topics below.

Steven Yannone our Founder and CEO, will be at the conference. Reach out to [email protected] for more information.

#proteomics #TeamMassSpec
Learn about de novo antibody sequencing by mass spec using only one run at poster TP-005 today!

#asms2025 #proteomics

@hecklab.bsky.social @tshamorkina.bsky.social @tkadava.bsky.social @joostsnijder.bsky.social
These new archaeal proteases are great for de novo antibody sequencing by mass spec. Great work by @tshamorkina.bsky.social , Laura and @tkadava.bsky.social together with @hecklab.bsky.social.

www.biorxiv.org/content/10.1...
June 3, 2025 at 3:45 PM
Reposted by CinderBio
Thanks to @cinderbio.bsky.social and @sciex.bsky.social for their contribution and support
May 30, 2025 at 12:49 AM
Reposted by CinderBio
We are excited to have it out: a combination of archaeal proteases and hybrid fragmentation for antibody de novo sequencing. Poster TP-005 #asms2025 #teammassspec
It was a true team effort @lperezpaneda.bsky.social @tkadava.bsky.social @joostsnijder.bsky.social and @hecklab.bsky.social
Deep Coverage and Extended Sequence Reads Obtained with a Single Archaeal Protease Expedite de novo Protein Sequencing by Mass Spectrometry www.biorxiv.org/cont...

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#proteomics #prot-preprint
May 30, 2025 at 12:48 AM
Just over a week to go until #ASMS2025 in Baltimore

Come see posters using CinderBio enzymes on the schedule and topics below.

Steven Yannone our Founder and CEO, will be at the conference. Reach out to [email protected] for more information.

#proteomics #TeamMassSpec
May 23, 2025 at 10:00 AM
Reposted by CinderBio
Toward Real-Time Proteomics: Blood to Biomarker Quantitation in under One Hour pubs.acs.org/doi/abs...

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#proteomics #prot-paper
March 24, 2025 at 9:40 AM
Reposted by CinderBio
Krakatoa doesn't have to just mean violent destruction. Close to real-time proteeomics was achieved via a combined effort between @CedarsSinai and Cinder with their unique hypothermophile enzyme "Krakatoa"

pubs.acs.org/doi/10.1021/...
Toward Real-Time Proteomics: Blood to Biomarker Quantitation in under One Hour
Multistep multihour tryptic proteolysis has limited the utility of bottom-up proteomics for cases that require immediate quantitative information. The power of proteomics to quantify biomarkers of hea...
pubs.acs.org
March 21, 2025 at 1:26 PM
Reposted by CinderBio
Reposted by CinderBio
Reposted by CinderBio
Awesome paper, where we present and evaluate the methodology that will someday enable real-time monitoring of circulating biomarkers. pubs.acs.org/doi/full/10....
Toward Real-Time Proteomics: Blood to Biomarker Quantitation in under One Hour
Multistep multihour tryptic proteolysis has limited the utility of bottom-up proteomics for cases that require immediate quantitative information. The power of proteomics to quantify biomarkers of health status cannot practically assist in clinical care if the dynamics of disease outpaces the turnaround of analysis. The recently available hyperthermoacidic archaeal (HTA) protease “Krakatoa” digests samples in a single 5 to 30 min step at pH 3 and >80 °C in conditions that disrupt most cells and tissues, denature proteins, and block disulfide reformation thereby dramatically expediting and simplifying sample preparation. The combination of quick single-step proteolysis with high-throughput dual-trapping single analytical column (DTSC) liquid chromatography–mass spectrometry (LC–MS) returns actionable data in less than 1 h from collection of unprocessed biofluid. The systematic evaluation of this methodology finds that over 160 proteins are quantified in less than 1 h from 1 μL of whole blood. Furthermore, labile Angiotensin I and II bioactive peptides along with a panel of protein species can be measured at 8 min intervals with a 20 min initial lag using targeted MS. With these methods, we analyzed serum and plasma from 53 individuals and quantified Angiotensin I and II and over 150 proteins including at least 46 that were not detected with trypsin. We discuss some of the implications of real-time proteomics including the immediate potential to advance several clinical and research applications.
pubs.acs.org
March 21, 2025 at 3:20 AM
At US HUPO, CinderBio technologies were featured in a platform presentation and two posters. Researchers highlighted how the simple sample preparation workflows led to complete and deep sequence reads for mAbs and de novo sequencing for new proteins.

cinderbio.com

#Proteomics #TeamMassSpec
March 20, 2025 at 3:30 PM
We want to give a public "Thank You!” to early adopters of CinderBio's initial HTA-Proteases. We are thrilled to contribute to experiments in clinical proteomics, epigenetics, immunotherapies, cancer drug discovery and more. We enjoy being this kind of busy. Thanks to all of you - Team CinderBio
November 14, 2023 at 10:45 AM
Venny has moved! After reading this blog post by @proteomicsnews.bsky.social I did a little digging and found this page: bioinfogp.cnb.csic.es where it says the site is down for maintenance. However, Venny is temporarily available here csbg.cnb.csic.es/BioinfoGP/ve... Happy Venning!

#proteomics
VENNY VENN IS DOWN!
Okay.  I'm not going to panic, but VENNY doesn't work.  If you aren't familiar, the VENNY website by Juan Carlos Oliveros (2007) was the fir...
proteomicsnews.blogspot.com
October 23, 2023 at 11:41 AM
Reposted by CinderBio
In what way?
September 30, 2023 at 1:59 PM
Reposted by CinderBio
RT (mstdn) |
Elk elk.zone/mstdn.scien...

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#proteomics #prot-RT #prot-paper
September 29, 2023 at 1:40 PM