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github.blog/developer-sk...

#paperalert My group is currently working on Eurasian minnows #Phoxinus. To make comparative genomics & popgen in this highly cryptic genus easier, we published an annotated chromosome-level reference genome. Thanks to @thetemi.bsky.social, Yanis, @astridboehne.bsky.social
doi.org/10.1093/giga...

We should all be outraged that the people who have dedicated their lives to protecting and interpreting our most precious natural and historic resources are being treated so callously by our federal government. I am sick to my stomach.

I wonder if Anaconda has provided clearer terms for its usage by non-profit research and academia, porting conda environments to miniforge was a pain in the ass🥴

Nextflow was such a revelation, replacing fragile clunky bash scripts with a robust system that could be relied on. The first round had some downsides (no modularity being my biggest issue) but DSL2 seems to have addressed most of those!

🧵 Bioinformatics faces a critical challenge: despite its importance, software quality often falls short due to the lack of proper development practices.

In our latest paper, we advocate for improving software quality in bioinformatics through teamwork.

academic.oup.com/bioinformati...

As a bioinformatician, the time invested into learning snakemake or nextflow is absolutely worth it in the long run, it might drive you crazy at first but hey, you'll have zero regrets down the line

My friends think I make too many graphs

But I know where to draw the line..

how to choose a font:

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yes, make america NORMAL. do not trim grey flannel BUSINESS suits with yellow PIPING because that's historically a SPORTING DETAIL