Reto Fiolka
@retof.bsky.social
Optical imaging, interested in STEM topics.
First generation graduate from ETH Zürich
Associate Professor at UT
Southwestern Medical Center
First generation graduate from ETH Zürich
Associate Professor at UT
Southwestern Medical Center
Felix Zhou's u-Segment3D is out:
www.nature.com/articles/s41...
It leverages 2D cell segmentations from orthoviews to generate a ‘consensus’ 3D segmentation.
It does a great job on segmenting densely packed samples, and we have used the algorithm in many applications.
www.nature.com/articles/s41...
It leverages 2D cell segmentations from orthoviews to generate a ‘consensus’ 3D segmentation.
It does a great job on segmenting densely packed samples, and we have used the algorithm in many applications.
November 12, 2025 at 2:41 AM
Felix Zhou's u-Segment3D is out:
www.nature.com/articles/s41...
It leverages 2D cell segmentations from orthoviews to generate a ‘consensus’ 3D segmentation.
It does a great job on segmenting densely packed samples, and we have used the algorithm in many applications.
www.nature.com/articles/s41...
It leverages 2D cell segmentations from orthoviews to generate a ‘consensus’ 3D segmentation.
It does a great job on segmenting densely packed samples, and we have used the algorithm in many applications.
3D tracking of mitochondria DNA (green dots) in a HeLa cell.
October 7, 2025 at 3:43 PM
3D tracking of mitochondria DNA (green dots) in a HeLa cell.
Volumetric imaging of 384 wells in a contact free format using an air lens.
Importantly, the 3D imaging remains diffraction limited and distortion-free, despite the large refractive index mismatch from air to water.
Importantly, the 3D imaging remains diffraction limited and distortion-free, despite the large refractive index mismatch from air to water.
October 6, 2025 at 6:47 PM
Volumetric imaging of 384 wells in a contact free format using an air lens.
Importantly, the 3D imaging remains diffraction limited and distortion-free, despite the large refractive index mismatch from air to water.
Importantly, the 3D imaging remains diffraction limited and distortion-free, despite the large refractive index mismatch from air to water.
Segmented nuclei (gray) and nucleoli (color) in an expanded liver slice:
October 6, 2025 at 6:36 PM
Segmented nuclei (gray) and nucleoli (color) in an expanded liver slice:
Movies:
Microvili formation and dynamics in T-cells.
Microvili formation and dynamics in T-cells.
October 6, 2025 at 6:35 PM
Movies:
Microvili formation and dynamics in T-cells.
Microvili formation and dynamics in T-cells.