Pierre-Paul Axisa
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ppaxisa.bsky.social
Pierre-Paul Axisa
@ppaxisa.bsky.social
researcher at CBMR (Copenhagen). Genomics, genetics, compbio, biostats, pun lover.
You covered previously the recent family GWAS from Tan et al.. How does that relate conceptually to the other approaches? It’s similar to RDR? But it only uses common variants so we miss the rare variants’ contributions?
November 22, 2025 at 3:11 PM
Next up are 3 rounds of 2 factor authentication. They time out each after 30sec. If you miss one you go back to the captcha. Get ready!
November 19, 2025 at 7:41 AM
Every time I see the glue example I can’t help but think "My name is SLIM SHADY" 😆
November 17, 2025 at 4:35 PM
You mention PyTorch in the blogpost. There’s been for a few years now a torch R package (that does not rely on PyTorch). Do you think this will shift some deep learning for biology to R? Or the "market shares" have already been trusted by Python?
torch for R
The torch ecosystem is a collection of packages for deep learning in R.
torch.mlverse.org
November 13, 2025 at 6:53 PM
Lots of coworker around me are suggesting I switch to Jupyter notebooks. And I’m always like
an older man in a brown jacket is standing in front of a tree and saying no .
ALT: an older man in a brown jacket is standing in front of a tree and saying no .
media.tenor.com
November 9, 2025 at 2:01 PM
Reposted by Pierre-Paul Axisa
The real question, the one many of us are avoiding, is whether we need some metric to rank publications. Be that JIF, citation count, or something akin to eLife's impact assessment.

And from my recent foray onto the academic job market, the answer is an unequivocal yes. Journals provide this.
November 7, 2025 at 10:24 AM
Is blue hematoma and red open wounds?
November 4, 2025 at 1:16 PM
That’s too bad :(
November 2, 2025 at 9:38 AM
@michelnivard.bsky.social created resolve.pub some months ago. I have not used it but it’s on my list when I write the next paper 🤩 bsky.app/profile/mich...
November 2, 2025 at 8:59 AM
Reposted by Pierre-Paul Axisa
With so many new methods buried in results-focused papers, this thread is my encouragement to groups to also publish separate protocols papers! You'll be pleasantly surprised at the engagement these papers get, and most importantly they provide real impact aiding others in their science.
October 31, 2025 at 9:09 AM
To be clear, I’m not blaming people for not maintaining their website, most academics get no credits from funders and their institutions to maintain these essential resources. But there are mitigations to safe guards the data for the community
October 31, 2025 at 7:06 PM
Police sources actually say the robbers were postdoc trying to raise funds for prelim data to go in their faculty applications
October 27, 2025 at 2:43 PM