phy_papers
@phypapers.bsky.social
Continuous feed for phylogenetics papers from PubMed, arXiv, bioRxiv, and EcoEvoRxiv. Run by @roblanfear.bsky.social
Make your own literature bot with these instructions: https://github.com/roblanf/phypapers
Make your own literature bot with these instructions: https://github.com/roblanf/phypapers
Comparative genomics of Bacillus velezensis and Bacillus subtilis reveals distinction and evolution of lipopeptide antimicrobial gene clusters https://pubmed.ncbi.nlm.nih.gov/41272433/
November 24, 2025 at 9:04 PM
Comparative genomics of Bacillus velezensis and Bacillus subtilis reveals distinction and evolution of lipopeptide antimicrobial gene clusters https://pubmed.ncbi.nlm.nih.gov/41272433/
Analysis of the IPT gene family reveals the critical role of the JrERF113-JrIPT1 module in cold resistance of walnut (Juglans regia) https://pubmed.ncbi.nlm.nih.gov/41272454/
November 24, 2025 at 8:04 PM
Analysis of the IPT gene family reveals the critical role of the JrERF113-JrIPT1 module in cold resistance of walnut (Juglans regia) https://pubmed.ncbi.nlm.nih.gov/41272454/
Genomic characterization and evolutionary analysis of three bovine viral diarrhea virus 1b strains from Taiwan, highlighting genomic evidence of cytopathic evolution https://pubmed.ncbi.nlm.nih.gov/41272668/
November 24, 2025 at 7:04 PM
Genomic characterization and evolutionary analysis of three bovine viral diarrhea virus 1b strains from Taiwan, highlighting genomic evidence of cytopathic evolution https://pubmed.ncbi.nlm.nih.gov/41272668/
First record of Argulus japonicus infestation on Cyprinus carpio in Hungary, and the first description of Argulus japonicus europaeus subsp. nov. Keve, 2025 https://pubmed.ncbi.nlm.nih.gov/41272677/
November 24, 2025 at 6:04 PM
First record of Argulus japonicus infestation on Cyprinus carpio in Hungary, and the first description of Argulus japonicus europaeus subsp. nov. Keve, 2025 https://pubmed.ncbi.nlm.nih.gov/41272677/
Crystal structure of MutYX: a novel clusterless adenine DNA glycosylase with a distinct C-terminal domain and 8-oxoguanine recognition sphere https://pubmed.ncbi.nlm.nih.gov/41273174/
November 24, 2025 at 5:04 PM
Crystal structure of MutYX: a novel clusterless adenine DNA glycosylase with a distinct C-terminal domain and 8-oxoguanine recognition sphere https://pubmed.ncbi.nlm.nih.gov/41273174/
A large-scale evolutionary and structural analysis of CLC channels and transporters https://pubmed.ncbi.nlm.nih.gov/41273251/
November 24, 2025 at 4:04 PM
A large-scale evolutionary and structural analysis of CLC channels and transporters https://pubmed.ncbi.nlm.nih.gov/41273251/
Pseudoxanthomonas fibrivorans sp. nov. 10HT, a cellulose-degrading bacterium isolated from soil https://pubmed.ncbi.nlm.nih.gov/41273438/
November 24, 2025 at 3:04 PM
Pseudoxanthomonas fibrivorans sp. nov. 10HT, a cellulose-degrading bacterium isolated from soil https://pubmed.ncbi.nlm.nih.gov/41273438/
Characterization of a novel alphapartitivirus associated with Ceratobasidium sp. AG-A strain SR-LN-10, a causal agent of strawberry root rot https://pubmed.ncbi.nlm.nih.gov/41273453/
November 24, 2025 at 2:03 PM
Characterization of a novel alphapartitivirus associated with Ceratobasidium sp. AG-A strain SR-LN-10, a causal agent of strawberry root rot https://pubmed.ncbi.nlm.nih.gov/41273453/
Recent progress in the microbial production of Xylanase https://pubmed.ncbi.nlm.nih.gov/41273491/
November 24, 2025 at 1:03 PM
Recent progress in the microbial production of Xylanase https://pubmed.ncbi.nlm.nih.gov/41273491/
A Sequence-Based Approach Reveals a Novel Family IV Lipolytic Enzyme in Cereibacter sphaeroides 2.4.1 https://pubmed.ncbi.nlm.nih.gov/41273538/
November 24, 2025 at 12:03 PM
A Sequence-Based Approach Reveals a Novel Family IV Lipolytic Enzyme in Cereibacter sphaeroides 2.4.1 https://pubmed.ncbi.nlm.nih.gov/41273538/
Clinical, Molecular, and Bioinformatic Study of Common Thrombophilia Mutation Factor V Leiden https://pubmed.ncbi.nlm.nih.gov/41273552/
November 24, 2025 at 11:03 AM
Clinical, Molecular, and Bioinformatic Study of Common Thrombophilia Mutation Factor V Leiden https://pubmed.ncbi.nlm.nih.gov/41273552/
Characterization of Alternaria Isolates from Brazilian Citrus Orchards by Fungicide Resistance Phenotype and Species https://pubmed.ncbi.nlm.nih.gov/41275354/
November 24, 2025 at 10:03 AM
Characterization of Alternaria Isolates from Brazilian Citrus Orchards by Fungicide Resistance Phenotype and Species https://pubmed.ncbi.nlm.nih.gov/41275354/
Plastome comparison and phylogenomic analysis of threatened wild Egyptian Capparis taxa https://pubmed.ncbi.nlm.nih.gov/41272440/
November 24, 2025 at 9:03 AM
Plastome comparison and phylogenomic analysis of threatened wild Egyptian Capparis taxa https://pubmed.ncbi.nlm.nih.gov/41272440/
Phylogenetic diversity and divergent arsenite oxidation of photoarsenotrophs in geothermal springs https://pubmed.ncbi.nlm.nih.gov/41273975/
November 24, 2025 at 8:03 AM
Phylogenetic diversity and divergent arsenite oxidation of photoarsenotrophs in geothermal springs https://pubmed.ncbi.nlm.nih.gov/41273975/
Evaluating Pretrained Protein Language Model Embeddings as Proxies for Functional Similarity https://pubmed.ncbi.nlm.nih.gov/41273410/
November 24, 2025 at 7:03 AM
Evaluating Pretrained Protein Language Model Embeddings as Proxies for Functional Similarity https://pubmed.ncbi.nlm.nih.gov/41273410/
Integration of blaOXA-48 into a Col156 plasmid drove a carbapenem-resistant Escherichia coli ST131 outbreak in New Zealand: Global genomic evidence for the gene's multilayered dissemination https://pubmed.ncbi.nlm.nih.gov/41273849/
November 24, 2025 at 6:03 AM
Integration of blaOXA-48 into a Col156 plasmid drove a carbapenem-resistant Escherichia coli ST131 outbreak in New Zealand: Global genomic evidence for the gene's multilayered dissemination https://pubmed.ncbi.nlm.nih.gov/41273849/
GenBank2PubMed: bridging viral genomic data and the scientific literature with AI-assisted curation https://pubmed.ncbi.nlm.nih.gov/41274978/
November 24, 2025 at 5:03 AM
GenBank2PubMed: bridging viral genomic data and the scientific literature with AI-assisted curation https://pubmed.ncbi.nlm.nih.gov/41274978/
OrthoGrafter: Rapid Identification of Orthologs from Precomputed Placement in Phylogenetic Trees https://pubmed.ncbi.nlm.nih.gov/41274989/
November 24, 2025 at 4:03 AM
OrthoGrafter: Rapid Identification of Orthologs from Precomputed Placement in Phylogenetic Trees https://pubmed.ncbi.nlm.nih.gov/41274989/
Phylogenetic diversity and divergent arsenite oxidation of photoarsenotrophs in geothermal springs https://pubmed.ncbi.nlm.nih.gov/41273975/
November 24, 2025 at 3:03 AM
Phylogenetic diversity and divergent arsenite oxidation of photoarsenotrophs in geothermal springs https://pubmed.ncbi.nlm.nih.gov/41273975/
OrthoGrafter: Rapid Identification of Orthologs from Precomputed Placement in Phylogenetic Trees https://pubmed.ncbi.nlm.nih.gov/41274989/
November 24, 2025 at 2:03 AM
OrthoGrafter: Rapid Identification of Orthologs from Precomputed Placement in Phylogenetic Trees https://pubmed.ncbi.nlm.nih.gov/41274989/
Plastome comparison and phylogenomic analysis of threatened wild Egyptian Capparis taxa https://pubmed.ncbi.nlm.nih.gov/41272440/
November 24, 2025 at 1:03 AM
Plastome comparison and phylogenomic analysis of threatened wild Egyptian Capparis taxa https://pubmed.ncbi.nlm.nih.gov/41272440/
Unpouching Peracarida relationships with ultraconserved elements https://www.biorxiv.org/content/10.1101/2025.11.21.689751v1
November 24, 2025 at 12:03 AM
Unpouching Peracarida relationships with ultraconserved elements https://www.biorxiv.org/content/10.1101/2025.11.21.689751v1
Structural evolution of a fungal cell wall protein family for β-glucan-binding and cell separation https://www.biorxiv.org/content/10.1101/2025.11.20.689653v1
November 23, 2025 at 11:03 PM
Structural evolution of a fungal cell wall protein family for β-glucan-binding and cell separation https://www.biorxiv.org/content/10.1101/2025.11.20.689653v1
Coliforms and Salmonella cross-contamination in retail frozen chicken and its contact ice, with global surveillance of chicken-derived Salmonella and S. Bareilly https://pubmed.ncbi.nlm.nih.gov/41267252/
November 23, 2025 at 9:13 PM
Coliforms and Salmonella cross-contamination in retail frozen chicken and its contact ice, with global surveillance of chicken-derived Salmonella and S. Bareilly https://pubmed.ncbi.nlm.nih.gov/41267252/
Phenotypic traits, genetic diversity, and toxigenic potential of Aspergillus flavus from maize ear rots in Sichuan Province, China https://pubmed.ncbi.nlm.nih.gov/41267256/
November 23, 2025 at 8:39 PM
Phenotypic traits, genetic diversity, and toxigenic potential of Aspergillus flavus from maize ear rots in Sichuan Province, China https://pubmed.ncbi.nlm.nih.gov/41267256/