phy_papers
@phypapers.bsky.social
Continuous feed for phylogenetics papers from PubMed, arXiv, bioRxiv, and EcoEvoRxiv. Run by @roblanfear.bsky.social
Make your own literature bot with these instructions: https://github.com/roblanf/phypapers
Make your own literature bot with these instructions: https://github.com/roblanf/phypapers
The first complete chloroplast genome and phylogenetic analysis of Rhododendron simsii var. putuoense G. Y. Li & Z. H. Chen (Ericaceae) from East China https://pubmed.ncbi.nlm.nih.gov/41293638/
November 27, 2025 at 4:15 AM
The first complete chloroplast genome and phylogenetic analysis of Rhododendron simsii var. putuoense G. Y. Li & Z. H. Chen (Ericaceae) from East China https://pubmed.ncbi.nlm.nih.gov/41293638/
Molecular Identification and Phylogenetic Analysis of Trypanosoma evansi with Assessment of Associated Risk Factors in Camels (Camelus dromedarius) Across Ten Districts of Punjab, Pakistan https://pubmed.ncbi.nlm.nih.gov/41295694/
November 27, 2025 at 3:57 AM
Molecular Identification and Phylogenetic Analysis of Trypanosoma evansi with Assessment of Associated Risk Factors in Camels (Camelus dromedarius) Across Ten Districts of Punjab, Pakistan https://pubmed.ncbi.nlm.nih.gov/41295694/
Phylogenetic clustering and ecological interactions of arbuscular mycorrhizal fungi and their associated microbiome of a spontaneous plant across Moroccan drylands https://pubmed.ncbi.nlm.nih.gov/41296027/
November 27, 2025 at 3:39 AM
Phylogenetic clustering and ecological interactions of arbuscular mycorrhizal fungi and their associated microbiome of a spontaneous plant across Moroccan drylands https://pubmed.ncbi.nlm.nih.gov/41296027/
Phylogenomic analysis and genetic mechanisms of antifungal resistance in clinical isolates of Candida glabrata (Nakaseomyces glabratus) from across Canada, 2013-2020 https://pubmed.ncbi.nlm.nih.gov/41294328/
November 27, 2025 at 3:21 AM
Phylogenomic analysis and genetic mechanisms of antifungal resistance in clinical isolates of Candida glabrata (Nakaseomyces glabratus) from across Canada, 2013-2020 https://pubmed.ncbi.nlm.nih.gov/41294328/
Phylogenomic diversity of clinical Saccharomyces cerevisiae and the prevalence of probiotic-derived isolates in a tertiary care center in Hungary https://pubmed.ncbi.nlm.nih.gov/41294354/
November 27, 2025 at 3:03 AM
Phylogenomic diversity of clinical Saccharomyces cerevisiae and the prevalence of probiotic-derived isolates in a tertiary care center in Hungary https://pubmed.ncbi.nlm.nih.gov/41294354/
Bioinformatics of Combined Nuclear and Mitochondrial Phylogenomics to Define Key Nodes for the Classification of Coleoptera https://pubmed.ncbi.nlm.nih.gov/41288263/
November 27, 2025 at 2:45 AM
Bioinformatics of Combined Nuclear and Mitochondrial Phylogenomics to Define Key Nodes for the Classification of Coleoptera https://pubmed.ncbi.nlm.nih.gov/41288263/
Efficient Bayesian Phylogenetics under the Infinite Sites Model https://pubmed.ncbi.nlm.nih.gov/41292938/
November 27, 2025 at 2:27 AM
Efficient Bayesian Phylogenetics under the Infinite Sites Model https://pubmed.ncbi.nlm.nih.gov/41292938/
Cryptic Diversity and Ecological Overlap in Sporothrix schenckii: Insights from Multilocus Phylogenetics of Clinical and Environmental Isolates https://pubmed.ncbi.nlm.nih.gov/41295140/
November 27, 2025 at 2:09 AM
Cryptic Diversity and Ecological Overlap in Sporothrix schenckii: Insights from Multilocus Phylogenetics of Clinical and Environmental Isolates https://pubmed.ncbi.nlm.nih.gov/41295140/
Oligotrophy and organic carbon dissipation as trophic strategy in chernozem rare and uncultured taxa https://www.biorxiv.org/content/10.1101/2025.11.25.690425v1
November 27, 2025 at 1:51 AM
Oligotrophy and organic carbon dissipation as trophic strategy in chernozem rare and uncultured taxa https://www.biorxiv.org/content/10.1101/2025.11.25.690425v1
Four Decades of Genomic Stability and Adaptive Divergence in Xanthomonas arboricola pv. pruni-Infecting Phages: Defining Duraznoxanthovirus arenicola and Its Evolutionary Framework https://www.biorxiv.org/content/10.1101/2025.11.25.690537v1
November 27, 2025 at 1:33 AM
Four Decades of Genomic Stability and Adaptive Divergence in Xanthomonas arboricola pv. pruni-Infecting Phages: Defining Duraznoxanthovirus arenicola and Its Evolutionary Framework https://www.biorxiv.org/content/10.1101/2025.11.25.690537v1
Cumulative cgMLST provides increased discrimination of nested phylogenetic groups https://www.biorxiv.org/content/10.1101/2025.11.25.689980v1
November 27, 2025 at 1:14 AM
Cumulative cgMLST provides increased discrimination of nested phylogenetic groups https://www.biorxiv.org/content/10.1101/2025.11.25.689980v1
Mutational spectra reveal influenza virus transmission routes and adaptation https://www.biorxiv.org/content/10.1101/2025.11.26.690773v1
November 27, 2025 at 12:56 AM
Mutational spectra reveal influenza virus transmission routes and adaptation https://www.biorxiv.org/content/10.1101/2025.11.26.690773v1
Robustness of Ancestral Recombination Graph Inference Tools to Phasing Errors https://www.biorxiv.org/content/10.1101/2025.11.24.690249v1
November 27, 2025 at 12:38 AM
Robustness of Ancestral Recombination Graph Inference Tools to Phasing Errors https://www.biorxiv.org/content/10.1101/2025.11.24.690249v1
Coordinated shifts in gene expression and regulation during mole-rat evolution https://www.biorxiv.org/content/10.1101/2025.11.24.690111v1
November 27, 2025 at 12:20 AM
Coordinated shifts in gene expression and regulation during mole-rat evolution https://www.biorxiv.org/content/10.1101/2025.11.24.690111v1
The five divergent amino acids rule and evolution analysis of cytochrome c oxidase as new methods for Scolopendra Linnaeus, 1758 species differentiation (Chilopoda. Scolopendromorpha). https://www.biorxiv.org/content/10.1101/2025.11.24.690109v1
November 27, 2025 at 12:02 AM
The five divergent amino acids rule and evolution analysis of cytochrome c oxidase as new methods for Scolopendra Linnaeus, 1758 species differentiation (Chilopoda. Scolopendromorpha). https://www.biorxiv.org/content/10.1101/2025.11.24.690109v1
Sexual selection and flight as predictors of sexual size and shape dimorphism in stick and leaf insects https://www.biorxiv.org/content/10.1101/2025.11.25.690473v1
November 26, 2025 at 11:44 PM
Sexual selection and flight as predictors of sexual size and shape dimorphism in stick and leaf insects https://www.biorxiv.org/content/10.1101/2025.11.25.690473v1
Optimized k-mer search across millions of bacterial genomes on laptops https://www.biorxiv.org/content/10.1101/2025.11.23.690050v1
November 26, 2025 at 11:26 PM
Optimized k-mer search across millions of bacterial genomes on laptops https://www.biorxiv.org/content/10.1101/2025.11.23.690050v1
IQ-NET: A Deep Learning Approach for Fast and Accurate Phylogenetic Inference from Real Alignments https://ecoevorxiv.org/repository/view/10906/
November 26, 2025 at 11:08 PM
IQ-NET: A Deep Learning Approach for Fast and Accurate Phylogenetic Inference from Real Alignments https://ecoevorxiv.org/repository/view/10906/
Eutherian mammals exhibit a greater capacity for cold acclimation than marsupials and birds: a comparative analysis https://pubmed.ncbi.nlm.nih.gov/41277425/
November 26, 2025 at 8:45 PM
Eutherian mammals exhibit a greater capacity for cold acclimation than marsupials and birds: a comparative analysis https://pubmed.ncbi.nlm.nih.gov/41277425/
Efficacy of a multi-clade inactivated recombinant vaccine against the circulating highly pathogenic influenza A/H5N1 of clade 2.3.4.4b in poultry https://pubmed.ncbi.nlm.nih.gov/41277443/
November 26, 2025 at 8:27 PM
Efficacy of a multi-clade inactivated recombinant vaccine against the circulating highly pathogenic influenza A/H5N1 of clade 2.3.4.4b in poultry https://pubmed.ncbi.nlm.nih.gov/41277443/
Near-complete genome sequences of a rice necrosis mosaic virus isolate infecting rice in Argentina https://pubmed.ncbi.nlm.nih.gov/41277885/
November 26, 2025 at 8:09 PM
Near-complete genome sequences of a rice necrosis mosaic virus isolate infecting rice in Argentina https://pubmed.ncbi.nlm.nih.gov/41277885/
In Silico Screening of Streptomyces sp. Metabolites Targeting P. falciparum DHODH and DPCK for Antimalarial Discovery https://pubmed.ncbi.nlm.nih.gov/41277945/
November 26, 2025 at 7:51 PM
In Silico Screening of Streptomyces sp. Metabolites Targeting P. falciparum DHODH and DPCK for Antimalarial Discovery https://pubmed.ncbi.nlm.nih.gov/41277945/
Characterization of the complete mitochondrial genome data of Asiatic Toad, Bufo gargarizans (Cantor, 1842) (Neobatrachia: Bufonidae) from Mianyang, China https://pubmed.ncbi.nlm.nih.gov/41278143/
November 26, 2025 at 7:33 PM
Characterization of the complete mitochondrial genome data of Asiatic Toad, Bufo gargarizans (Cantor, 1842) (Neobatrachia: Bufonidae) from Mianyang, China https://pubmed.ncbi.nlm.nih.gov/41278143/
The complete mitogenome dataset of Hasora Schoenherr (Latreille, 1824) (Lepidoptera: Hesperiidae: Coeliadinae) from Malaysia https://pubmed.ncbi.nlm.nih.gov/41278147/
November 26, 2025 at 7:15 PM
The complete mitogenome dataset of Hasora Schoenherr (Latreille, 1824) (Lepidoptera: Hesperiidae: Coeliadinae) from Malaysia https://pubmed.ncbi.nlm.nih.gov/41278147/
Capillaria pterophylli Heinze, 1933 (Nematoda: Capillariidae Railliet, 1915) in imported ornamental Cichlidae from Asia into South Africa: the first molecular data and scanning electron microscopy https://pubmed.ncbi.nlm.nih.gov/41278505/
November 26, 2025 at 6:57 PM
Capillaria pterophylli Heinze, 1933 (Nematoda: Capillariidae Railliet, 1915) in imported ornamental Cichlidae from Asia into South Africa: the first molecular data and scanning electron microscopy https://pubmed.ncbi.nlm.nih.gov/41278505/