@nayeimkhan.bsky.social
Microbiome | Computational metagenomics | Bioinformatics | Gut Microbiome and Human Health interplay enthusiast
Reposted
OUT NOW: Processing-bias correction with DEBIAS-M improves cross-study generalization of microbiome-based prediction models
@tkorem.bsky.social & co
#microsky #microbiomesky 🧪
www.nature.com/articles/s41...
@tkorem.bsky.social & co
#microsky #microbiomesky 🧪
www.nature.com/articles/s41...
Processing-bias correction with DEBIAS-M improves cross-study generalization of microbiome-based prediction models - Nature Microbiology
DEBIAS-M corrects technical variability in microbiome data in a manner both interpretable and suitable for machine learning. In extensive benchmarks, DEBIAS-M facilitates robust analyses that generali...
www.nature.com
March 27, 2025 at 4:34 PM
OUT NOW: Processing-bias correction with DEBIAS-M improves cross-study generalization of microbiome-based prediction models
@tkorem.bsky.social & co
#microsky #microbiomesky 🧪
www.nature.com/articles/s41...
@tkorem.bsky.social & co
#microsky #microbiomesky 🧪
www.nature.com/articles/s41...
Reposted
Cutting edge deep-learning based tools for metagenomic research https://academic.oup.com/nsr/advance-article/doi/10.1093/nsr/nwaf056/8024426 🧬🖥️🧪
February 27, 2025 at 4:30 PM
Cutting edge deep-learning based tools for metagenomic research https://academic.oup.com/nsr/advance-article/doi/10.1093/nsr/nwaf056/8024426 🧬🖥️🧪
Reposted
In our latest review, we explore 12 deep-learning tools for metagenomic analysis, covering their strengths, limitations, and key applications. We hope it serves as both a resource and inspiration for new ways to analyze metagenomic data. Great work by Eli Levy Karin!
📄 doi.org/10.1093/nsr/...
📄 doi.org/10.1093/nsr/...
February 22, 2025 at 5:47 AM
In our latest review, we explore 12 deep-learning tools for metagenomic analysis, covering their strengths, limitations, and key applications. We hope it serves as both a resource and inspiration for new ways to analyze metagenomic data. Great work by Eli Levy Karin!
📄 doi.org/10.1093/nsr/...
📄 doi.org/10.1093/nsr/...
Reposted
Curtis will be giving a free webinar on our new tool MaAslin3 on February 20th. Come check out what's new and the changes we made to improve differential abundance testing in microbiome data!
cmbio.io/webinars/maa...
cmbio.io/webinars/maa...
Webinar| MaAsLin 3 for Microbiome Statistics and Epidemiology
Join us for an enlightening session with Dr Curtis Huttenhower as he delves into the transformative capabilities of this next-generation statistical tool.
cmbio.io
February 3, 2025 at 8:36 PM
Curtis will be giving a free webinar on our new tool MaAslin3 on February 20th. Come check out what's new and the changes we made to improve differential abundance testing in microbiome data!
cmbio.io/webinars/maa...
cmbio.io/webinars/maa...
Reposted
Out now in @nature.com: Gut microbiome diversity across African populations - a valuable resource for further research and foundational for global health equity. 🧪
www.nature.com/articles/s41...
www.nature.com/articles/s41...
Expanding the human gut microbiome atlas of Africa - Nature
A cross-sectional study from four African countries shows the importance of investigating the gut microbiome in previously under-represented populations and provides a framework for equitable microbio...
www.nature.com
January 30, 2025 at 3:21 PM
Out now in @nature.com: Gut microbiome diversity across African populations - a valuable resource for further research and foundational for global health equity. 🧪
www.nature.com/articles/s41...
www.nature.com/articles/s41...
Reposted
Use the Human Microbiome Compendium data!
We made the data and code available, & created a website and R package to navigate the compendium. Links:
- Website: microbiomap.org
- Data: zenodo.org/records/1373...
- R package: blekhmanlab.github.io/MicroBioMap/
- Code: github.com/blekhmanlab/...
We made the data and code available, & created a website and R package to navigate the compendium. Links:
- Website: microbiomap.org
- Data: zenodo.org/records/1373...
- R package: blekhmanlab.github.io/MicroBioMap/
- Code: github.com/blekhmanlab/...
January 24, 2025 at 2:50 AM
Use the Human Microbiome Compendium data!
We made the data and code available, & created a website and R package to navigate the compendium. Links:
- Website: microbiomap.org
- Data: zenodo.org/records/1373...
- R package: blekhmanlab.github.io/MicroBioMap/
- Code: github.com/blekhmanlab/...
We made the data and code available, & created a website and R package to navigate the compendium. Links:
- Website: microbiomap.org
- Data: zenodo.org/records/1373...
- R package: blekhmanlab.github.io/MicroBioMap/
- Code: github.com/blekhmanlab/...