Michael Jendrusch
@mjendrusch.bsky.social
(he/him) Former PhD student / Postdoc @ Korbel group, EMBL.
Protein ML person, mathematics & science enthusiast.
developer of salad
preprint: https://www.biorxiv.org/content/10.1101/2025.01.31.635780v1
code: https://github.com/mjendrusch/salad
Protein ML person, mathematics & science enthusiast.
developer of salad
preprint: https://www.biorxiv.org/content/10.1101/2025.01.31.635780v1
code: https://github.com/mjendrusch/salad
We used a similar random neighbour scheme in salad (www.nature.com/articles/s42...), with 16 neighbours by residue index, 16 neighbours by distance and another 16 using the 1/d^3 scheme from Chroma, which worked reasonably well for protein backbone generation.
Efficient protein structure generation with sparse denoising models - Nature Machine Intelligence
A small and fast diffusion model is presented, which is able to efficiently generate long protein backbones.
www.nature.com
November 16, 2025 at 9:18 PM
We used a similar random neighbour scheme in salad (www.nature.com/articles/s42...), with 16 neighbours by residue index, 16 neighbours by distance and another 16 using the 1/d^3 scheme from Chroma, which worked reasonably well for protein backbone generation.
Also, shoutout to @blender.org and @bradyajohnston.bsky.social for making it so easy to turn protein structures into nice images!
5/5
5/5
September 24, 2025 at 12:27 PM
Also, shoutout to @blender.org and @bradyajohnston.bsky.social for making it so easy to turn protein structures into nice images!
5/5
5/5
While I was working on salad as part of my PhD at Korbel group at EMBL, it was very much a passion project. So it makes me very happy to see @embl.org feature this paper!
Thanks again to Jan and the team supporting me on my more non-standard projects!
4/🧵
Thanks again to Jan and the team supporting me on my more non-standard projects!
4/🧵
September 24, 2025 at 12:27 PM
While I was working on salad as part of my PhD at Korbel group at EMBL, it was very much a passion project. So it makes me very happy to see @embl.org feature this paper!
Thanks again to Jan and the team supporting me on my more non-standard projects!
4/🧵
Thanks again to Jan and the team supporting me on my more non-standard projects!
4/🧵