Gemma Reguera 🌎
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microgem.bsky.social
Gemma Reguera 🌎
@microgem.bsky.social
Professor of Microbiology and Associate Dean for Faculty Affairs and Development at Michigan State University. Editor in Chief of Applied and Environmental Microbiology (AEM). Views are my own.
And in the cover: Methanotroph flexibility harnessed to boost polyhydroxybutyrate (PHB) bioplastic synthesis in Methylosinus trichosporium. (Image credit: YoungJae Kim, ScAPIENS; reprinted with permission.)

journals.asm.org/toc/aem/91/11
AEM Table of Contents Volume 91, Issue 11
Applied and Environmental Microbiology: Table of Contents Volume 91, Issue 11
journals.asm.org
November 26, 2025 at 10:15 AM
✅ IN THE COMPANY OF NITRIFIERS – Importance of biodiversity in the management of nitrogen removal from wastewater.
November 26, 2025 at 10:10 AM
✅ PHAGE RESISTANCE À LA CRISPR – A method for long-term, programmable protection of bacteria in industrial fermentations.
✅ THE CASE FOR MUCOFILMS – A commentary recognizing host mucus and biofilm matrix as a distinct ecological microenvironment.
November 26, 2025 at 10:10 AM
✅ MICROBIAL COMMUNITY RESPONSES TO FARMING MANAGEMENT – A commentary about the impact of farming practices on biogeochemical processes.
✅ TURNING FOES INTO FRIENDS – A commentay about protective biofilm coatings against fouling.
November 26, 2025 at 10:10 AM
✅ COMPOST TO THE RESCUE! – Biomarkers of disease-suppressive composts.
✅ A CLOSTRIDIAL APPROACH TO WEIGHT MANAGEMENT – Next-generation probiotics for gut microflora and weight management in mice.
November 26, 2025 at 10:09 AM
We are being crushed by so may rocks lately.
November 13, 2025 at 12:59 AM
We aim to represent global perspectives on microbial innovations in agriculture. Edited by two of our wonderful editors and experts in the field: Satoshi Ishi and Martha Vives.

Send us your contribution!
November 12, 2025 at 12:36 PM
This AEM Special Series seeks to capture the full diversity of agricultural scales, systems, and practices. From temperate and tropical cropping systems to arid and high-altitude environments, and from smallholder farms to industrial-scale operations.
November 12, 2025 at 12:34 PM
The field is now entering a new phase where microbial genetics, synthetic biology, and ecologically grounded interventions converge to deliver measurable gains in yield, resilience, nutrient efficiency, and food safety.
November 12, 2025 at 12:33 PM
Microbial biotechnology is revolutionizing how we grow food, manage soils, and protect crops and farmed animals to build sustainable, climate-smart, and circular agricultural systems.
November 12, 2025 at 12:33 PM
OF CHEESE, YOGURT, AND PHAGES 

Phage infections of Streptococcus thermophilus starter cultures threaten dairy fermentations. A surface receptor critical for phage-host interactions can be targeted to develop more robust starter cultures. doi.org/10.1128/aem....
The cell surface-associated rhamnose-glucose polysaccharide represents the receptor of Streptococcus thermophilus bacteriophage P738 | Applied and Environmental Microbiology
Streptococcus thermophilus is one of the most extensively applied members of the lactic acid bacteria, being extensively used as a bacterial starter culture in the production of fermented foods, including cheeses and yogurt. Bacteriophage infections present a significant threat to industrial dairy fermentations, which can lead to substandard production processes and product quality. Understanding phage-host interactions, which commence with the recognition and binding of a given bacteriophage to a particular host-encoded, cell surface-associated receptor, is essential for developing strategies to minimize phage-related risks in dairy fermentations. This study identifies the specific cell surface polysaccharide structure produced by Streptococcus thermophilus as the receptor required for infection by phage P738, bridging a key knowledge gap in phage-host interactions in this important industrial bacterial species. By elucidating how phage P738 recognizes and binds to its host, this work offers valuable information to aid strain selection and the development of phage-robust starter cultures.
doi.org
October 26, 2025 at 8:03 AM
ACIDOPHILES, SULFATE MINERALS, AND MARS

Gypsum and other sulfate deposits commonly found on Mars formed under acidic conditions early in the planet’s history. Terrestrial sulfuric caves provide analogs to study extremophilic microorganisms driving these reactions. doi.org/10.1128/aem....
Microbial ecology of acidic, biogenic gypsum: community structure and distribution of extremophiles on freshly formed and relict sulfate deposits in a hydrogen sulfide-rich cave | Applied and Environmental Microbiology
Gypsum and other sulfate salts are common on Mars, and many of these deposits are thought to have formed from acidic fluids early in the planet’s history. Understanding the life that survives and thrives in similar environments on Earth is therefore crucial for evaluating whether these Martian sulfates are or ever were habitable. One such environment where acidic gypsum occurs is in sulfuric acid caves, where extremophilic microorganisms drive the precipitation of sulfate minerals by oxidizing hydrogen sulfide gas from the cave atmosphere. Here, we characterized the communities of microorganisms on freshly formed and ancient gypsum in the Frasassi Caves and found that the gypsum deposits hosted microbial communities that changed based on chemical energy availability and the age of the gypsum. Our findings underscore the importance of chemical and microbiological interactions in shaping habitable niches and provide context for searching for past or present life in acidic Martian sulfates.
doi.org
October 26, 2025 at 8:01 AM
BIOREMEDIATION TO THE RESCUE FOR MEGADIVERSE COUNTRIES 

Sustainable, nature-based solutions against widespread pollution in megadiverse countries promise to preserve the invaluable biodiversity they harbor. doi.org/10.1128/aem....
Restoring nature with microbes: bioremediation in the world’s biodiversity hotspots | Applied and Environmental Microbiology
Currently, there are 17 countries on the list of megadiverse countries also known as the Like-Minded Megadiverse Countries: Brazil, Colombia, Mexico, Perú, Ecuador, the United States, Australia, China...
doi.org
October 26, 2025 at 7:59 AM
BACTERIOPHAGE ENDOLYSINS IN THE FIGHT AGAINST ACNE 

Antibacterial activity of a peptide generated from the endolysin of anti-Cutibacterium acnes phages promises to advance anti-acne therapeutics and other cosmetic applications. doi.org/10.1128/aem....
Comparative antibacterial activity of N-terminal and C-terminal domains of a recombinant endolysin against Cutibacterium acnes | Applied and Environmental Microbiology
Cutibacterium acnes is known to play a significant role in the pathology of acne vulgaris and several other disorders. Conventional methods of treating C. acnes infections using antibiotics face an ever-aggravating antibiotic resistance challenge. Endolysins present a promising alternative with advantages such as specificity and low-to-no chances of resistance. The current study compares the antibacterial activity of the full length as well as its N- and C-terminal domains of an endolysin from phage CAP 10-3. In addition, the dose-dependent effect and specificity of the N-terminal domain (which showed the most significant anti-C. acnes activity) are also explained. These findings can pave the way for developing alternative peptide-based anti-C. acnes therapeutics.
doi.org
October 26, 2025 at 7:53 AM
SPOOKY VIROMES DURING CADAVER DECOMPOSITION 

Machine learning to identify virus-driven microbial succession stages that can serve as forensic biomarkers during the decomposition of buried animal remains. doi.org/10.1128/aem....
Viral community succession during cadaver decomposition and its potential for estimating postmortem intervals | Applied and Environmental Microbiology
We present a viral succession-based framework for estimating PMI in buried remains. Our study identifies stage-specific viral biomarkers and identified nine viral families significantly correlated with PMI. By combining metagenomics and machine learning, we developed an Extremely Randomized Trees (ERT) model that achieved a low prediction error (test set: R² = 0.96, MAE = 2.54 days). Furthermore, our findings demonstrate that viral and bacterial communities exhibit significant consistency and correlation during cadaver decomposition. This study not only provides a novel tool for the accurate estimation of forensic PMI but also advances our insight into viral regulation of bacteria and their interactions during cadaver decomposition.
doi.org
October 26, 2025 at 7:52 AM
A SPOTLIGHT ON AEM’S PLANETARY MICROBIOLOGY SPECIAL COLLECTION

Guest editor Betül Kaçar guides us through articles in AEM’s Planetary Microbiology collection, highlighting the transformative microbial innovations and singularities that make Earth what is today. doi.org/10.1128/aem....
Planetary microbiology: microbes, planets, and the search for life | Applied and Environmental Microbiology
Life on Earth has existed for nearly 4 billion years, and for most of that time, it was microbial (1). The diverse world we see around us today owes its entire existence to a few foundational events c...
doi.org
October 26, 2025 at 7:49 AM
Grant season would like a word.
October 7, 2025 at 1:51 PM