Kevin Dean
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kevin-dean.bsky.social
Kevin Dean
@kevin-dean.bsky.social
Reposted by Kevin Dean
Finally, the love child of AI and microscopy.

A major advance.

Thanks for sharing @kevin-dean.bsky.social
November 12, 2025 at 7:31 AM
I am excited to see this resubmitted.
November 7, 2025 at 7:44 PM
Reposted by Kevin Dean
We've now discovered some neat cell culture dishes that feature a 50 micron thick film of a proprietary polymer with refractive index even closer to water than FEP. They work just as well as our homemade FEP assembly and are available in multiwell plate format too!

www.sarstedt.com/en/products/...
October 28, 2025 at 8:27 PM
Reposted by Kevin Dean
Switching From `pip` to `uv` in Python #python
Switching From `pip` to `uv` in Python #python
Learn the ins and outs of uv and how to transition from Pip to uv.
blog.appsignal.com
October 21, 2025 at 4:00 PM
I finally found it!
October 15, 2025 at 12:06 PM
Reposted by Kevin Dean
From @retof.bsky.social @kevin-dean.bsky.social et al. As a big proponent of image-based high throughput phenotypic screening and AI-enabled hit calling this looks really cool www.biorxiv.org/content/10.1...
Multi-immersion Oblique Plane Microscope (miOPM): A reconfigurable platform for high-resolution Light-Sheet Fluorescence Microscopy
Light-Sheet Fluorescence Microscopy (LSFM) enables gentle, rapid, and efficient volumetric imaging of biological specimens. Despite its potential, LSFM has fragmented into multiple variants, each narr...
www.biorxiv.org
October 13, 2025 at 1:10 PM
With miOPM now out on bioRxiv, the future of imaging is super bright.
October 12, 2025 at 10:16 AM
Reposted by Kevin Dean
Excited to announce the first @cshlnews.bsky.social meeting on Cell Modeling in Space and Time, June 2026 💫

meetings.cshl.edu/meetings.asp...

Bringing together experiments, computation and theory to explore dynamic, multi-scale cellular organization and function!

1/3
October 10, 2025 at 9:23 AM
Heidelberg, you disappoint me.
October 9, 2025 at 4:38 AM
The claim that the spinning disk confocal microscope’s days are limited appears increasingly accurate.
We present multi-immersion Oblique Plane microscope (miOPM), a light-sheet platform that can be adapted to a wide range of applications, from sensitive live cell imaging to imaging organs and cleared tissues.
www.biorxiv.org/content/10.1...
October 6, 2025 at 6:28 PM
An exciting opportunity for recent PhD graduates. bit.ly/ShanahanFellow
September 25, 2025 at 11:28 AM
Look who’s on the cover of Cell Reports Methods!
September 15, 2025 at 4:50 PM
Great to hear a seminar from the world famous @haesleinhuepf.bsky.social!
September 12, 2025 at 2:09 PM
Reposted by Kevin Dean
E11 seeks a research associate with experience in fluorescence microscopy and tissue sectioning for our sample processing team. Work at a Focused Research Organization with great people, solid benefits, and tons of energy to complete the first mammalian connectome.

jobs.lever.co/convergentre...
Convergent Research - E11 Bio - Research Assistant, Biological Sample Processing
E11 Bio is on a mission to reach a whole-brain human connectome. We are a collaborative and interdisciplinary team of scientists and engineers engaged in a neuroscience moonshot project to develop a r...
jobs.lever.co
August 18, 2025 at 7:56 PM
Thrilled to share our new work in Cell Reports Methods: MCT-ASLM, a multiscale light-sheet microscopy platform that captures biology from tissue landscapes down to organelles, revealing rare events like sparse neurons and micrometastases. www.cell.com/cell-reports...
Feature-driven whole-tissue imaging with subcellular resolution
Lin et al. present a self-driving light-sheet microscope that integrates whole-organ surveys with automated, high-resolution targeting of either user-specified or autonomously identified features. By ...
www.cell.com
September 2, 2025 at 7:40 PM
When your continuous integration pipeline betrays you...
August 29, 2025 at 11:54 AM
u-Probe now can be run without a MATLAB license, and exports detection and tracking results in a format that can immediately be visualized with @napari.org!
github.com/DanuserLab/u...
GitHub - DanuserLab/u-probe: Processing of raw ratiometric biosensor images (for example based on FRET) into fully corrected "ratio maps" or "activation maps" — images showing the localized activation...
Processing of raw ratiometric biosensor images (for example based on FRET) into fully corrected "ratio maps" or "activation maps" — images showing the localized activation of th...
github.com
August 28, 2025 at 4:13 PM
Reposted by Kevin Dean
Once is an exception, twice is a trend, thrice is a tradition!

Save the date for our now-traditional annual OME-NGFF extravaganza in Zurich!

Whether you’ve just heard about OME-NGFF and are curious to learn more or if you are working with it every day, there is something for everyone this year!
We're happy to announce the 2025 International OME-NGFF workshop 🎉

📅 Dates:
- Symposium: Nov 10–11, 2025
- Hackathon: Nov 12–14, 2025

📍 Location: Zurich, Switzerland

Full details & registration: www.biovisioncenter.uzh.ch/en/events/Up... 

#bioimaging #openscience #OMENGFF #OMEZarr

(1/x 🧵)
August 25, 2025 at 1:50 PM
Reposted by Kevin Dean
In our new paper, we use a new 3D single-cell reference map to guide the design and validation of a new multi-compartment assembloid that mimics the function and architecture of the human endometrial tissue, exhibiting stromal decidualization.

More here: www.biorxiv.org/content/10.1...
August 23, 2025 at 1:10 PM
Reposted by Kevin Dean
Final program of the 10-year #mesoSPIM2025 Anniversary Symposium, October 13-15 in Zurich! Amazing lineup of speakers: biologists, physicists, developers, computer scientists and industry experts! Join us to learn, present, and connect! Registration until Sept. 15. www.adabd.uzh.ch/en/events/me...
August 22, 2025 at 3:36 PM