Jim Shaw
@jimshaw.bsky.social
Postdoc at Dana-Farber and Harvard Med with Heng Li (@lh3lh3.bsky.social). Prev: UBC / UofT.
I like thinking about computational biological sequence analysis and its applications to metagenomics.
https://jim-shaw-bluenote.github.io
I like thinking about computational biological sequence analysis and its applications to metagenomics.
https://jim-shaw-bluenote.github.io
Super classy and much respect for updating the benchmarks Ryan. What a nice surprise. Very appreciated as a developer :).
Grats on the huge improvements @gaetanbenoit.bsky.social for metamdbg
Grats on the huge improvements @gaetanbenoit.bsky.social for metamdbg
September 23, 2025 at 1:15 PM
Super classy and much respect for updating the benchmarks Ryan. What a nice surprise. Very appreciated as a developer :).
Grats on the huge improvements @gaetanbenoit.bsky.social for metamdbg
Grats on the huge improvements @gaetanbenoit.bsky.social for metamdbg
Great!! Let me know what you find :)
September 11, 2025 at 12:43 PM
Great!! Let me know what you find :)
Not included with myloasm, but check out pubmed.ncbi.nlm.nih.gov/38833287/ maybe?
How low can you go? Short-read polishing of Oxford Nanopore bacterial genome assemblies - PubMed
It is now possible to assemble near-perfect bacterial genomes using Oxford Nanopore Technologies (ONT) long reads, but short-read polishing is usually required for perfection. However, the effect of s...
pubmed.ncbi.nlm.nih.gov
September 8, 2025 at 4:37 PM
Not included with myloasm, but check out pubmed.ncbi.nlm.nih.gov/38833287/ maybe?