ilyavkirov.bsky.social
@ilyavkirov.bsky.social
Reposted by ilyavkirov.bsky.social
Big congratulations @tobybarilbio.bsky.social!
Please check out and share our final version of the transposon mobilization work in a fungal pathogen - out now in Nature Communications
www.nature.com/articles/s41...
Please check out and share our final version of the transposon mobilization work in a fungal pathogen - out now in Nature Communications
www.nature.com/articles/s41...
November 12, 2025 at 3:38 PM
Big congratulations @tobybarilbio.bsky.social!
Please check out and share our final version of the transposon mobilization work in a fungal pathogen - out now in Nature Communications
www.nature.com/articles/s41...
Please check out and share our final version of the transposon mobilization work in a fungal pathogen - out now in Nature Communications
www.nature.com/articles/s41...
Reposted by ilyavkirov.bsky.social
New OA Article: "Major alleles of CDCA7 shape CG methylation in Arabidopsis thaliana" rdcu.be/ePaOY
GWAS identifies CDCA7 as a regulator of DNA methylation in Arabidopsis thaliana . CDCA7 binds the chromatin remodeller DDM1 and modulates the control of CG methylation.
GWAS identifies CDCA7 as a regulator of DNA methylation in Arabidopsis thaliana . CDCA7 binds the chromatin remodeller DDM1 and modulates the control of CG methylation.
November 10, 2025 at 1:23 PM
New OA Article: "Major alleles of CDCA7 shape CG methylation in Arabidopsis thaliana" rdcu.be/ePaOY
GWAS identifies CDCA7 as a regulator of DNA methylation in Arabidopsis thaliana . CDCA7 binds the chromatin remodeller DDM1 and modulates the control of CG methylation.
GWAS identifies CDCA7 as a regulator of DNA methylation in Arabidopsis thaliana . CDCA7 binds the chromatin remodeller DDM1 and modulates the control of CG methylation.
Reposted by ilyavkirov.bsky.social
New paper! Work led by @p-bourguet.bsky.social and Frédéric Berger at the GMI of the @oeaw.bsky.social and @esasaki007.bsky.social identified how protein CDCA7 helps plants stably maintain epigenetic modifications across generations.
Read more: www.oeaw.ac.at/gmi/detail/n...
Read more: www.oeaw.ac.at/gmi/detail/n...
November 7, 2025 at 10:33 AM
New paper! Work led by @p-bourguet.bsky.social and Frédéric Berger at the GMI of the @oeaw.bsky.social and @esasaki007.bsky.social identified how protein CDCA7 helps plants stably maintain epigenetic modifications across generations.
Read more: www.oeaw.ac.at/gmi/detail/n...
Read more: www.oeaw.ac.at/gmi/detail/n...
Reposted by ilyavkirov.bsky.social
We discovered an endogenous retrovirus that's still spreading in natural D. melanogaster populations! It was horizontally transferred from D. erecta in Central Africa, so we named it "Kuruka", which means "jump" in Swahili. Read its cool story here: www.biorxiv.org/content/10.1...
October 4, 2025 at 5:50 AM
We discovered an endogenous retrovirus that's still spreading in natural D. melanogaster populations! It was horizontally transferred from D. erecta in Central Africa, so we named it "Kuruka", which means "jump" in Swahili. Read its cool story here: www.biorxiv.org/content/10.1...
Reposted by ilyavkirov.bsky.social
Efficient creation of decorative double-flowered petunia through CRISPR/Cas9.
From: onlinelibrary.wiley.com/doi/full/10....
From: onlinelibrary.wiley.com/doi/full/10....
October 1, 2025 at 2:06 PM
Efficient creation of decorative double-flowered petunia through CRISPR/Cas9.
From: onlinelibrary.wiley.com/doi/full/10....
From: onlinelibrary.wiley.com/doi/full/10....
Reposted by ilyavkirov.bsky.social
Have folks had the chance to try out the free-to-use OpenCRISPR yet?
It seems to offer a great alternative for cash-strapped startups.
www.nature.com/articles/s41...
It seems to offer a great alternative for cash-strapped startups.
www.nature.com/articles/s41...
Design of highly functional genome editors by modelling CRISPR–Cas sequences - Nature
Gene editors designed using artificial intelligence can undertake precision editing of the human genome.
www.nature.com
September 30, 2025 at 10:29 PM
Have folks had the chance to try out the free-to-use OpenCRISPR yet?
It seems to offer a great alternative for cash-strapped startups.
www.nature.com/articles/s41...
It seems to offer a great alternative for cash-strapped startups.
www.nature.com/articles/s41...
Reposted by ilyavkirov.bsky.social
TEtrimmer: a tool to automate the manual curation of transposable elements. #TransposableElements #ManualCuration #Genomics #Bioinformatics @natcomms.nature.com 🧬 🖥️
www.nature.com/articles/s41...
www.nature.com/articles/s41...
September 27, 2025 at 6:05 PM
TEtrimmer: a tool to automate the manual curation of transposable elements. #TransposableElements #ManualCuration #Genomics #Bioinformatics @natcomms.nature.com 🧬 🖥️
www.nature.com/articles/s41...
www.nature.com/articles/s41...
Reposted by ilyavkirov.bsky.social
🚀 We’re hiring a Postdoc!
Join our group in Poznan, Poland to study meiotic crossover recombination in plants 🌱 Highly motivated & enthusiastic candidates are welcome!
📅 Deadline: Nov 1, 2025
🔗 ibmib.web.amu.edu.pl/wp-content/uploads/2025/09/Postdoc_position-2025-Ziolkowskis-Lab.pdf
Join our group in Poznan, Poland to study meiotic crossover recombination in plants 🌱 Highly motivated & enthusiastic candidates are welcome!
📅 Deadline: Nov 1, 2025
🔗 ibmib.web.amu.edu.pl/wp-content/uploads/2025/09/Postdoc_position-2025-Ziolkowskis-Lab.pdf
September 27, 2025 at 5:03 AM
🚀 We’re hiring a Postdoc!
Join our group in Poznan, Poland to study meiotic crossover recombination in plants 🌱 Highly motivated & enthusiastic candidates are welcome!
📅 Deadline: Nov 1, 2025
🔗 ibmib.web.amu.edu.pl/wp-content/uploads/2025/09/Postdoc_position-2025-Ziolkowskis-Lab.pdf
Join our group in Poznan, Poland to study meiotic crossover recombination in plants 🌱 Highly motivated & enthusiastic candidates are welcome!
📅 Deadline: Nov 1, 2025
🔗 ibmib.web.amu.edu.pl/wp-content/uploads/2025/09/Postdoc_position-2025-Ziolkowskis-Lab.pdf
Optimized R2 Retroelement Complexes Enable Precise and Efficient DNA Insertion into Plant Genomes www.researchsquare.com/article/rs-7...
An error has occurred
Research Square is a preprint platform that makes research communication faster, fairer, and more useful.
www.researchsquare.com
August 31, 2025 at 3:06 PM
Optimized R2 Retroelement Complexes Enable Precise and Efficient DNA Insertion into Plant Genomes www.researchsquare.com/article/rs-7...
Reposted by ilyavkirov.bsky.social
August’s Nature Plants cover story shows how we integrated large-scale multiDAP and snRNA data to reveal drivers of cell type identity and evolution in flowering plants. www.nature.com/nplants/volu... We packed a lot into this paper! Here’s a single-cell spin on what we found:
Nature Plants - Cistromes uncovered
Transcription factors (TFs) have specific patterns of binding to gene promoter regions, which have similarities and differences within TF families and...
www.nature.com
August 19, 2025 at 11:08 PM
August’s Nature Plants cover story shows how we integrated large-scale multiDAP and snRNA data to reveal drivers of cell type identity and evolution in flowering plants. www.nature.com/nplants/volu... We packed a lot into this paper! Here’s a single-cell spin on what we found:
Reposted by ilyavkirov.bsky.social
From a gene’s single cell expression–through spatial localization–to novel function, and beyond!
Now out @natplants.nature.com
We built a comprehensive spatial-transcriptomic atlas of Arabidopsis, revealing cell-type identities across organs in unprecedented detail
www.nature.com/articles/s41...
Now out @natplants.nature.com
We built a comprehensive spatial-transcriptomic atlas of Arabidopsis, revealing cell-type identities across organs in unprecedented detail
www.nature.com/articles/s41...
A single-cell, spatial transcriptomic atlas of the Arabidopsis life cycle - Nature Plants
This study presents an extensive single-nucleus and spatial transcriptomic atlas of the Arabidopsis life cycle that represents ten distinct developmental time points inclusive of six diverse organs.
www.nature.com
August 19, 2025 at 7:20 PM
From a gene’s single cell expression–through spatial localization–to novel function, and beyond!
Now out @natplants.nature.com
We built a comprehensive spatial-transcriptomic atlas of Arabidopsis, revealing cell-type identities across organs in unprecedented detail
www.nature.com/articles/s41...
Now out @natplants.nature.com
We built a comprehensive spatial-transcriptomic atlas of Arabidopsis, revealing cell-type identities across organs in unprecedented detail
www.nature.com/articles/s41...
Reposted by ilyavkirov.bsky.social
New OA Resource: "A single-cell, spatial transcriptomic atlas of the Arabidopsis life cycle" rdcu.be/eBmkU
An extensive single-nucleus and spatial transcriptomic atlas of the Arabidopsis life cycle that represents 10 developmental time points in 6 diverse organs.
An extensive single-nucleus and spatial transcriptomic atlas of the Arabidopsis life cycle that represents 10 developmental time points in 6 diverse organs.
August 19, 2025 at 10:36 AM
New OA Resource: "A single-cell, spatial transcriptomic atlas of the Arabidopsis life cycle" rdcu.be/eBmkU
An extensive single-nucleus and spatial transcriptomic atlas of the Arabidopsis life cycle that represents 10 developmental time points in 6 diverse organs.
An extensive single-nucleus and spatial transcriptomic atlas of the Arabidopsis life cycle that represents 10 developmental time points in 6 diverse organs.
Reposted by ilyavkirov.bsky.social
And here’s my News & Views on the subject:
www.nature.com/articles/s41...
www.nature.com/articles/s41...
Cooling down transposon mobility - Nature Plants
Uncontrolled transposable element (TE) mobility can be deleterious to genome integrity. To protect their genomes, plants have evolved intricate silencing mechanisms that put brakes on these mobile ele...
www.nature.com
August 11, 2025 at 1:57 PM
And here’s my News & Views on the subject:
www.nature.com/articles/s41...
www.nature.com/articles/s41...
Reposted by ilyavkirov.bsky.social
Epigenetics Update - Plants repress ROS1 expression to attenuate heat-induced transposon burst go.nature.com/4fxjBmr
Weiqiang Qian (Peking University) reporting in Nat Plants
#Epigenetics #Plants #DNAme #DNAm
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Gain deeper insights into gene regulation; epigenometech.com
Weiqiang Qian (Peking University) reporting in Nat Plants
#Epigenetics #Plants #DNAme #DNAm
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Gain deeper insights into gene regulation; epigenometech.com
Plants repress ROS1 expression to attenuate heat-induced transposon burst - Nature Plants
Plants suppress the DNA demethylase ROS1 under heat stress to limit transposon activation, preventing genome instability. This conserved mechanism balances stress adaptation with genome protection.
go.nature.com
August 12, 2025 at 12:15 PM
Epigenetics Update - Plants repress ROS1 expression to attenuate heat-induced transposon burst go.nature.com/4fxjBmr
Weiqiang Qian (Peking University) reporting in Nat Plants
#Epigenetics #Plants #DNAme #DNAm
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Gain deeper insights into gene regulation; epigenometech.com
Weiqiang Qian (Peking University) reporting in Nat Plants
#Epigenetics #Plants #DNAme #DNAm
---
Gain deeper insights into gene regulation; epigenometech.com