Hannah Heil
@hannah-superres.bsky.social
Microscopy enthusiast @NordenfeltLab @LundUniversity : #SuperResolution #SMLM #OpticalCellBiology #femalewithmicroscope All tweets represent my independent views🤓
Pinned
🙌
Talking about impostor syndrome.....
I'll be a teacher in the EMBO "Hack your Microscope" together with some of the very best researchers in the field.
5.5 days of hacking and microscope/fluidics shenanigans in Portugal.
You can apply here: meetings.embo.org/event/26-mic... #EMBOmicroscope
I'll be a teacher in the EMBO "Hack your Microscope" together with some of the very best researchers in the field.
5.5 days of hacking and microscope/fluidics shenanigans in Portugal.
You can apply here: meetings.embo.org/event/26-mic... #EMBOmicroscope
Hack your microscope
Recent advances in open-source microscopy have made high-resolution, customizable imaging systems more accessible, allowing researchers to overcome the constraints of traditional commercial solutions…
meetings.embo.org
November 11, 2025 at 12:37 PM
🙌
Reposted by Hannah Heil
Talking about impostor syndrome.....
I'll be a teacher in the EMBO "Hack your Microscope" together with some of the very best researchers in the field.
5.5 days of hacking and microscope/fluidics shenanigans in Portugal.
You can apply here: meetings.embo.org/event/26-mic... #EMBOmicroscope
I'll be a teacher in the EMBO "Hack your Microscope" together with some of the very best researchers in the field.
5.5 days of hacking and microscope/fluidics shenanigans in Portugal.
You can apply here: meetings.embo.org/event/26-mic... #EMBOmicroscope
Hack your microscope
Recent advances in open-source microscopy have made high-resolution, customizable imaging systems more accessible, allowing researchers to overcome the constraints of traditional commercial solutions…
meetings.embo.org
November 11, 2025 at 11:39 AM
Talking about impostor syndrome.....
I'll be a teacher in the EMBO "Hack your Microscope" together with some of the very best researchers in the field.
5.5 days of hacking and microscope/fluidics shenanigans in Portugal.
You can apply here: meetings.embo.org/event/26-mic... #EMBOmicroscope
I'll be a teacher in the EMBO "Hack your Microscope" together with some of the very best researchers in the field.
5.5 days of hacking and microscope/fluidics shenanigans in Portugal.
You can apply here: meetings.embo.org/event/26-mic... #EMBOmicroscope
Reposted by Hannah Heil
Registration is now open to attend Journal of Cell Science's meeting on Imaging Cell Dynamics, organised by Francesca Bottanelli, Guillaume Jacquemet, Michael Way and Giulia Zanetti.
Find out more: biologists.com/meetings/jcs...
#JCSimaging #Microscopy #Microscope #Imaging #Cells #CellScience
Find out more: biologists.com/meetings/jcs...
#JCSimaging #Microscopy #Microscope #Imaging #Cells #CellScience
October 9, 2025 at 11:15 AM
Registration is now open to attend Journal of Cell Science's meeting on Imaging Cell Dynamics, organised by Francesca Bottanelli, Guillaume Jacquemet, Michael Way and Giulia Zanetti.
Find out more: biologists.com/meetings/jcs...
#JCSimaging #Microscopy #Microscope #Imaging #Cells #CellScience
Find out more: biologists.com/meetings/jcs...
#JCSimaging #Microscopy #Microscope #Imaging #Cells #CellScience
🚀 Exciting news for the imaging community!
The EMBO Practical Course – Hack Your Microscope is coming to ITQB NOVA (Oeiras, Portugal) on April 20–25, 2026 🧠🔬
👉 Course details & registration: meetings.embo.org/event/26-mic...
#Microscopy #OpenScience #Bioimaging #EMBOmicroscope
The EMBO Practical Course – Hack Your Microscope is coming to ITQB NOVA (Oeiras, Portugal) on April 20–25, 2026 🧠🔬
👉 Course details & registration: meetings.embo.org/event/26-mic...
#Microscopy #OpenScience #Bioimaging #EMBOmicroscope
November 10, 2025 at 9:10 AM
🚀 Exciting news for the imaging community!
The EMBO Practical Course – Hack Your Microscope is coming to ITQB NOVA (Oeiras, Portugal) on April 20–25, 2026 🧠🔬
👉 Course details & registration: meetings.embo.org/event/26-mic...
#Microscopy #OpenScience #Bioimaging #EMBOmicroscope
The EMBO Practical Course – Hack Your Microscope is coming to ITQB NOVA (Oeiras, Portugal) on April 20–25, 2026 🧠🔬
👉 Course details & registration: meetings.embo.org/event/26-mic...
#Microscopy #OpenScience #Bioimaging #EMBOmicroscope
Reposted by Hannah Heil
🔬🤖 ICYMI: impressive preprint from @owenlabuob.bsky.social tackling a major bottleneck – how to systematically compare super-resolution microscopy across experiments. Novel ML framework embeds single-molecule data for cross-sample analysis. Integrated with nano-org database✨ doi.org/10.1101/2025...
November 3, 2025 at 5:57 PM
🔬🤖 ICYMI: impressive preprint from @owenlabuob.bsky.social tackling a major bottleneck – how to systematically compare super-resolution microscopy across experiments. Novel ML framework embeds single-molecule data for cross-sample analysis. Integrated with nano-org database✨ doi.org/10.1101/2025...
Reposted by Hannah Heil
microfabricated stamps, fresh off the printer :)
October 26, 2025 at 4:24 PM
microfabricated stamps, fresh off the printer :)
Reposted by Hannah Heil
🦠🔬🤖🧑💻 #mAIcrobe is out! With @pinholab.bsky.social's lab, we launched an open-source framework for high-throughput bacterial image analysis. By rockstars A. Brito & B. Saraiva et al, making #DeepLearning for phenotyping accessible! Easy to use, plus model training
📜 www.biorxiv.org/content/10.1...
📜 www.biorxiv.org/content/10.1...
October 22, 2025 at 11:10 AM
🦠🔬🤖🧑💻 #mAIcrobe is out! With @pinholab.bsky.social's lab, we launched an open-source framework for high-throughput bacterial image analysis. By rockstars A. Brito & B. Saraiva et al, making #DeepLearning for phenotyping accessible! Easy to use, plus model training
📜 www.biorxiv.org/content/10.1...
📜 www.biorxiv.org/content/10.1...
🤯 Amazing!!
for #FluorescenceFriday : is your ExM sample too large to be imaged with high NA objectives? VIPS it! Very clever way to tackle one of the biggest challenge in large volumetric ExM www.science.org/doi/10.1126/...
Mesoscale volumetric fluorescence imaging at nanoscale resolution by photochemical sectioning
Optical nanoscopy of intact biological specimens has been transformed by recent advancements in hydrogel-based tissue clearing and expansion, enabling the imaging of cellular and subcellular structure...
www.science.org
October 20, 2025 at 12:50 PM
🤯 Amazing!!
Reposted by Hannah Heil
for #FluorescenceFriday : is your ExM sample too large to be imaged with high NA objectives? VIPS it! Very clever way to tackle one of the biggest challenge in large volumetric ExM www.science.org/doi/10.1126/...
Mesoscale volumetric fluorescence imaging at nanoscale resolution by photochemical sectioning
Optical nanoscopy of intact biological specimens has been transformed by recent advancements in hydrogel-based tissue clearing and expansion, enabling the imaging of cellular and subcellular structure...
www.science.org
October 17, 2025 at 12:29 PM
for #FluorescenceFriday : is your ExM sample too large to be imaged with high NA objectives? VIPS it! Very clever way to tackle one of the biggest challenge in large volumetric ExM www.science.org/doi/10.1126/...
Reposted by Hannah Heil
Our article "Ångström-resolution imaging of cell-surface glycans" made it to the cover of Nature Nanotechnology! 🤩 @natnano.nature.com
www.nature.com/nnano/volume...
www.nature.com/nnano/volume...
October 18, 2025 at 2:32 PM
Our article "Ångström-resolution imaging of cell-surface glycans" made it to the cover of Nature Nanotechnology! 🤩 @natnano.nature.com
www.nature.com/nnano/volume...
www.nature.com/nnano/volume...
Reposted by Hannah Heil
I am hiring! - looking for a Staff Scientist to co-run my research group with me. Staff Scientist is a senior professional scientist role at EMBL. Please forward to people you might know who could be interested! embl.wd103.myworkdayjobs.com/en-US/EMBL/j...
Staff Scientist
About EMBL-EBI EMBL’s European Bioinformatics Institute is a data powerhouse, utilised on a global scale to advance scientific discovery through bioinformatics and solutions to some of the world’s mos...
embl.wd103.myworkdayjobs.com
October 10, 2025 at 7:30 AM
I am hiring! - looking for a Staff Scientist to co-run my research group with me. Staff Scientist is a senior professional scientist role at EMBL. Please forward to people you might know who could be interested! embl.wd103.myworkdayjobs.com/en-US/EMBL/j...
Reposted by Hannah Heil
Job alert!
We are looking for a bioimage analysis to work in an image analysis core facility in beautiful Paris. Can I ask you to share this opportunity with your networks?
See also on the forum:
forum.image.sc/t/research-e...
We are looking for a bioimage analysis to work in an image analysis core facility in beautiful Paris. Can I ask you to share this opportunity with your networks?
See also on the forum:
forum.image.sc/t/research-e...
Research engineer in Bioimage Analysis for the researchers of the inIdEx FORMULA
Hi all We are looking for a bioimage analysis to work in an image analysis core facility in beautiful Paris. Can I ask you to share this opportunity with your networks? The position is in the Instit...
forum.image.sc
October 7, 2025 at 12:39 PM
Job alert!
We are looking for a bioimage analysis to work in an image analysis core facility in beautiful Paris. Can I ask you to share this opportunity with your networks?
See also on the forum:
forum.image.sc/t/research-e...
We are looking for a bioimage analysis to work in an image analysis core facility in beautiful Paris. Can I ask you to share this opportunity with your networks?
See also on the forum:
forum.image.sc/t/research-e...
Reposted by Hannah Heil
Happy #FluorescenceFriday. Christophe Leterrier⭐in #TheMicroscopists and reflects on the
make-or-break moment at the end of his postdoc
when he came close to leaving academia before securing his CNRS position
and how these experiences shape the way he mentors others.
Stream: bit.ly/microscopist...
make-or-break moment at the end of his postdoc
when he came close to leaving academia before securing his CNRS position
and how these experiences shape the way he mentors others.
Stream: bit.ly/microscopist...
The Microscopists | Christophe Leterrier (CNRS & Aix-Marseille Université)
This time on The Microscopists, we're joined by Christophe Leterrier, team leader at NeuroCyto in Marseille and director of a Nikon Center of Excellence for super-resolution microscopy.Christophe r...
bit.ly
October 3, 2025 at 1:36 PM
Happy #FluorescenceFriday. Christophe Leterrier⭐in #TheMicroscopists and reflects on the
make-or-break moment at the end of his postdoc
when he came close to leaving academia before securing his CNRS position
and how these experiences shape the way he mentors others.
Stream: bit.ly/microscopist...
make-or-break moment at the end of his postdoc
when he came close to leaving academia before securing his CNRS position
and how these experiences shape the way he mentors others.
Stream: bit.ly/microscopist...
Reposted by Hannah Heil
... and 7 academic labs! @olivierpertz.bsky.social @toettch.bsky.social @hannah-superres.bsky.social @alfredorates.bsky.social
Your implementation is missing? Want to join our monthly meetings on smart microscopy approaches? Contact us & find out more on
smartmicroscopy.github.io
Your implementation is missing? Want to join our monthly meetings on smart microscopy approaches? Contact us & find out more on
smartmicroscopy.github.io
Smart Microscopy Working Group — Smart Microscopy Working Group's Website
smartmicroscopy.github.io
October 1, 2025 at 9:43 AM
... and 7 academic labs! @olivierpertz.bsky.social @toettch.bsky.social @hannah-superres.bsky.social @alfredorates.bsky.social
Your implementation is missing? Want to join our monthly meetings on smart microscopy approaches? Contact us & find out more on
smartmicroscopy.github.io
Your implementation is missing? Want to join our monthly meetings on smart microscopy approaches? Contact us & find out more on
smartmicroscopy.github.io
Reposted by Hannah Heil
Want to get started with smart microscopy? 🧠🔬
Check out our online repository with implementations from labs and industry -- lots of practical tips and links to sample code! smartmicroscopy.github.io/implementati...
More details in the ✨updated preprint!✨
www.biorxiv.org/content/10.1...
Check out our online repository with implementations from labs and industry -- lots of practical tips and links to sample code! smartmicroscopy.github.io/implementati...
More details in the ✨updated preprint!✨
www.biorxiv.org/content/10.1...
October 1, 2025 at 9:43 AM
Want to get started with smart microscopy? 🧠🔬
Check out our online repository with implementations from labs and industry -- lots of practical tips and links to sample code! smartmicroscopy.github.io/implementati...
More details in the ✨updated preprint!✨
www.biorxiv.org/content/10.1...
Check out our online repository with implementations from labs and industry -- lots of practical tips and links to sample code! smartmicroscopy.github.io/implementati...
More details in the ✨updated preprint!✨
www.biorxiv.org/content/10.1...
Reposted by Hannah Heil
Our new preprint is up! This is the main postdoc work of @wiesner-t.bsky.social focusing on exocytosis along the axon shaft and its regulation by the sub membrane actin-spectrin scaffold: www.biorxiv.org/content/10.1...
Read the thread below for a summary of our findings 🧵1/11
Read the thread below for a summary of our findings 🧵1/11
September 17, 2025 at 2:55 PM
Our new preprint is up! This is the main postdoc work of @wiesner-t.bsky.social focusing on exocytosis along the axon shaft and its regulation by the sub membrane actin-spectrin scaffold: www.biorxiv.org/content/10.1...
Read the thread below for a summary of our findings 🧵1/11
Read the thread below for a summary of our findings 🧵1/11
Reposted by Hannah Heil
It is all implemented as a Pyton-based open source control widget that seamlessly interfaces with a commercial @abberior.rocks MINFLUX microscope and its control software Imspector. Try it for yourself, and let me know if you have any questions! github.com/jonatanalvel...
GitHub - jonatanalvelid/etMINFLUX: Event-triggered MINFLUX: a smart microscopy control software interacting with Imspector that is controlling an Abberior MINFLUX system.
Event-triggered MINFLUX: a smart microscopy control software interacting with Imspector that is controlling an Abberior MINFLUX system. - jonatanalvelid/etMINFLUX
github.com
September 2, 2025 at 8:59 AM
It is all implemented as a Pyton-based open source control widget that seamlessly interfaces with a commercial @abberior.rocks MINFLUX microscope and its control software Imspector. Try it for yourself, and let me know if you have any questions! github.com/jonatanalvel...
Reposted by Hannah Heil
etMINFLUX uses confocal monitoring and triggers MINFLUX acquisitions at rapid and rare events in living cells previously unreachable with MINFLUX, exemplified by tracking the 3D membrane topography in dynamin-mediated endocytosis (10 s) and virus budding (min) in action.
September 2, 2025 at 8:59 AM
etMINFLUX uses confocal monitoring and triggers MINFLUX acquisitions at rapid and rare events in living cells previously unreachable with MINFLUX, exemplified by tracking the 3D membrane topography in dynamin-mediated endocytosis (10 s) and virus budding (min) in action.
Reposted by Hannah Heil
Excited to share my postdoc work from the Eggeling lab in Jena (@leibnizipht.bsky.social, #FSUJena, #KTHuniversity) on bringing smart microscopy to super-resolution MINFLUX: event-triggered MINFLUX microscopy.
September 2, 2025 at 8:59 AM
Excited to share my postdoc work from the Eggeling lab in Jena (@leibnizipht.bsky.social, #FSUJena, #KTHuniversity) on bringing smart microscopy to super-resolution MINFLUX: event-triggered MINFLUX microscopy.
Reposted by Hannah Heil
Sounds like an interesting comparison of resolution assessment methods for super-resolution… Would anyone with access send me the pdf (christophe dot leterrier dot gmail dot com)? Thanks!
link.springer.com/article/10.1...
link.springer.com/article/10.1...
Resolution assessment of super-resolution microscopy imaging: structural and technical dependencies for cell biology - Cytotechnology
Super-resolution fluorescence microscopy (SRM) has enabled visualization of nanoscale cellular structures, but systematic evaluation of resolution assessment methods across diverse biological structur...
link.springer.com
August 31, 2025 at 9:04 AM
Sounds like an interesting comparison of resolution assessment methods for super-resolution… Would anyone with access send me the pdf (christophe dot leterrier dot gmail dot com)? Thanks!
link.springer.com/article/10.1...
link.springer.com/article/10.1...
Reposted by Hannah Heil
Hello! Very excited to share our latest preprint, which is great news for us but terrible news for any diehard fans of PSNR and SSIM as image quality metrics in microscopy... (1/5)
www.biorxiv.org/content/10.1...
www.biorxiv.org/content/10.1...
Image quality metrics fail to accurately represent biological information in fluorescence microscopy
Image processing methods offer the potential to improve the quality of fluorescence microscopy data, allowing for image acquisition at lower, less phototoxic illumination doses. The training and evalu...
www.biorxiv.org
August 7, 2025 at 1:00 PM
Hello! Very excited to share our latest preprint, which is great news for us but terrible news for any diehard fans of PSNR and SSIM as image quality metrics in microscopy... (1/5)
www.biorxiv.org/content/10.1...
www.biorxiv.org/content/10.1...
Reposted by Hannah Heil
PS: Also check out our other paper on smart microscopy that came out this week! Current applications, technical details of different implementations. The issue of missing standards in microscopy control / poor interoperability & how we think it could be solved! www.biorxiv.org/content/10.1...
Smart Microscopy: Current Implementations and a Roadmap for Interoperability
Smart microscopy is transforming life sciences by automating experimental imaging workflows and enabling real-time adaptation based on feedback from images and other data streams. This shift increases...
www.biorxiv.org
August 21, 2025 at 8:38 PM
PS: Also check out our other paper on smart microscopy that came out this week! Current applications, technical details of different implementations. The issue of missing standards in microscopy control / poor interoperability & how we think it could be solved! www.biorxiv.org/content/10.1...
Reposted by Hannah Heil
Automated optogenetic control of hundreds of cells in parallel. Each cell is individually steered, collectively acting as a "tissue printer". Preprint & code out! www.biorxiv.org/content/10.1...
August 21, 2025 at 8:16 PM
Automated optogenetic control of hundreds of cells in parallel. Each cell is individually steered, collectively acting as a "tissue printer". Preprint & code out! www.biorxiv.org/content/10.1...
🚨 New preprint on bioRxiv! 🚨
Smart microscopy🔬 is reshaping life sciences—but progress is slowed by fragmentation.
@lhinderling.bsky.social & the Smart Microsopy Working Group maps the field & proposes a path toward an open, interoperable future.
🧵👇
doi.org/10.1101/2025...
Smart microscopy🔬 is reshaping life sciences—but progress is slowed by fragmentation.
@lhinderling.bsky.social & the Smart Microsopy Working Group maps the field & proposes a path toward an open, interoperable future.
🧵👇
doi.org/10.1101/2025...
August 20, 2025 at 1:10 PM
🚨 New preprint on bioRxiv! 🚨
Smart microscopy🔬 is reshaping life sciences—but progress is slowed by fragmentation.
@lhinderling.bsky.social & the Smart Microsopy Working Group maps the field & proposes a path toward an open, interoperable future.
🧵👇
doi.org/10.1101/2025...
Smart microscopy🔬 is reshaping life sciences—but progress is slowed by fragmentation.
@lhinderling.bsky.social & the Smart Microsopy Working Group maps the field & proposes a path toward an open, interoperable future.
🧵👇
doi.org/10.1101/2025...
Reposted by Hannah Heil
Join us at #BNMI2025 today at 11:30 for our talk ‘Euro-BioImaging – another kind of smart microscopy’. Also, don’t miss our poster on the Smart Microscopy Working Group!
More info:
More info:
BNMI 2025 Symposium
The 4th annual meeting of the Bridging Nordic Microscopy Infrastructure, “The BNMI 2025 Symposium” will be hosted by the Centre for Cellular Imaging at the University of Gothenburg, Sweden…
www.eurobioimaging.eu
August 20, 2025 at 6:38 AM
Join us at #BNMI2025 today at 11:30 for our talk ‘Euro-BioImaging – another kind of smart microscopy’. Also, don’t miss our poster on the Smart Microscopy Working Group!
More info:
More info: