Horacio V. Guzman
@gocompmodeling.bsky.social
Physicist and engineer, into multiple scale models of proteins/RNA/membranes, polymers, scientific computing, more --> http://tinyurl.com/goCompModeling
Not yet there for extracting a 3D model from a "picture image" and applying it to our #Proteins, #chompchmesky , #compchem; @Meta the protein was flatenned in the depth direction, otherwise would be great to track some Multiscale model AI mappings, and much more 🧬 🧶🪱
November 24, 2025 at 2:12 PM
Not yet there for extracting a 3D model from a "picture image" and applying it to our #Proteins, #chompchmesky , #compchem; @Meta the protein was flatenned in the depth direction, otherwise would be great to track some Multiscale model AI mappings, and much more 🧬 🧶🪱
Thanks to the organizers for giving me the opportunity to present my lab' top-notch RNA models at multiple scales, including polymer physics(⚡ electrostatic and 🍦 mechanical properties) inputs and features of structural predictions with AI 🧵! #RNAtime #RNApuzzles #RNAmultiscaleSims #rnaProtInteract
Last Friday, we had an inspiring 10th Rhineland RNA Club meeting with top class speakers. It's great to see how the community is growing and the range of topics we're covering. Special thanks to Didier Stainier @stainierlab.bsky.social Simon Bekker-Jensen @bekkerjensenlab.bsky.social, Ranen Aviner!
November 19, 2025 at 12:47 PM
Thanks to the organizers for giving me the opportunity to present my lab' top-notch RNA models at multiple scales, including polymer physics(⚡ electrostatic and 🍦 mechanical properties) inputs and features of structural predictions with AI 🧵! #RNAtime #RNApuzzles #RNAmultiscaleSims #rnaProtInteract
Reposted by Horacio V. Guzman
Are you a postdoc stuck in the US?! Is your research stalled or are you in any way affected by the whims of that unfettered madman? Interested in MD simulations of large biomolecules?!
Consider joining me at the University of Freiburg!
uni-freiburg.de/frias/call-f...
Consider joining me at the University of Freiburg!
uni-freiburg.de/frias/call-f...
Call for Applications: Early Career Rescue Fellowship – Freiburg Institute for Advanced Studies
uni-freiburg.de
November 17, 2025 at 8:51 AM
Are you a postdoc stuck in the US?! Is your research stalled or are you in any way affected by the whims of that unfettered madman? Interested in MD simulations of large biomolecules?!
Consider joining me at the University of Freiburg!
uni-freiburg.de/frias/call-f...
Consider joining me at the University of Freiburg!
uni-freiburg.de/frias/call-f...
BA.3.2 in Rheinland Pfalz 🇩🇪... most likely Hessen too... #compchemsky, #compchem, #goViralAgain #physVirology #compVirology
Tracking SARSCoV2 Lineage BA.3.2* over time
Total BA.3.2* - Globally: 63
Countries reporting BA.3.2*: #Australia, #SouthAfrica, #Netherlands, #USA (traveler seq), #Germany, #Mozambique, #Slovenia, #UK, #Denmark
Tracker: public.tableau.com/app/profile/...
Total BA.3.2* - Globally: 63
Countries reporting BA.3.2*: #Australia, #SouthAfrica, #Netherlands, #USA (traveler seq), #Germany, #Mozambique, #Slovenia, #UK, #Denmark
Tracker: public.tableau.com/app/profile/...
November 10, 2025 at 4:01 PM
BA.3.2 in Rheinland Pfalz 🇩🇪... most likely Hessen too... #compchemsky, #compchem, #goViralAgain #physVirology #compVirology
Reposted by Horacio V. Guzman
**Job Alert** Exciting postdoc position available: theoretical and experimental cryo-EM studies of flexible biomolecules. Competitive salary, collaborative environment at NYSBC and Flatiron Institute. Please share!! and contact: [email protected]
October 22, 2025 at 2:55 PM
**Job Alert** Exciting postdoc position available: theoretical and experimental cryo-EM studies of flexible biomolecules. Competitive salary, collaborative environment at NYSBC and Flatiron Institute. Please share!! and contact: [email protected]
📣 Check out our 𝔾𝕝𝕪𝕔𝕠-𝕒𝕕𝕤𝕠𝕣𝕡𝕥𝕚𝕠𝕟 on 𝔽𝕠𝕞𝕚𝕥𝕖𝕤
Preprint! doi.org/10.1101/2025... We highlight glycans’ dual capacity, to act either as a glue that dominates the whole glycoprotein adsorption strength via tethering, or as a blocking element preventing adsorption 1/2 #glycanResearch #glycanAsGlues 🩹🧵🦠
Preprint! doi.org/10.1101/2025... We highlight glycans’ dual capacity, to act either as a glue that dominates the whole glycoprotein adsorption strength via tethering, or as a blocking element preventing adsorption 1/2 #glycanResearch #glycanAsGlues 🩹🧵🦠
October 21, 2025 at 4:19 PM
📣 Check out our 𝔾𝕝𝕪𝕔𝕠-𝕒𝕕𝕤𝕠𝕣𝕡𝕥𝕚𝕠𝕟 on 𝔽𝕠𝕞𝕚𝕥𝕖𝕤
Preprint! doi.org/10.1101/2025... We highlight glycans’ dual capacity, to act either as a glue that dominates the whole glycoprotein adsorption strength via tethering, or as a blocking element preventing adsorption 1/2 #glycanResearch #glycanAsGlues 🩹🧵🦠
Preprint! doi.org/10.1101/2025... We highlight glycans’ dual capacity, to act either as a glue that dominates the whole glycoprotein adsorption strength via tethering, or as a blocking element preventing adsorption 1/2 #glycanResearch #glycanAsGlues 🩹🧵🦠
After 4 days of listening to top-notch experts in the field of glycoprotein/membrane interactions. I want to say big thanks to @rommieamaro.bsky.social @biophysmatt.bsky.social @rocovino.bsky.social and AtilioV & @giorgiocolombo.bsky.social for hosting me as a speaker and also poster presenter* 2!
September 10, 2025 at 4:58 PM
After 4 days of listening to top-notch experts in the field of glycoprotein/membrane interactions. I want to say big thanks to @rommieamaro.bsky.social @biophysmatt.bsky.social @rocovino.bsky.social and AtilioV & @giorgiocolombo.bsky.social for hosting me as a speaker and also poster presenter* 2!
awesome, and very helpful to the computational biophysist!🧶🪡
Research Briefing:
"Visualizing the nanostructure of the cell’s sugar coat."
Here, the author's views, expert opinion, and insights behind the recently published paper "Ångström-resolution imaging of cell-surface glycans" are presented.
#Glycotime
www.nature.com/articles/s41...
"Visualizing the nanostructure of the cell’s sugar coat."
Here, the author's views, expert opinion, and insights behind the recently published paper "Ångström-resolution imaging of cell-surface glycans" are presented.
#Glycotime
www.nature.com/articles/s41...
August 6, 2025 at 12:23 PM
awesome, and very helpful to the computational biophysist!🧶🪡
Participate in Capri, BTW are glycan-protein complexes also tackled?
A small reminder to all structural biologists around working on biomolecular complexes: please consider sharing your complexes as targets for CAPRI - AI has not solved all structure prediction problems and there are still challenges! See www.capri-docking.org/contribute/
CAPRI Docking
www.capri-docking.org
July 29, 2025 at 9:39 AM
Participate in Capri, BTW are glycan-protein complexes also tackled?
Are you studying biophysical phenomena @interfaces ? Then check-out our newest toolbox doi.org/10.1016/j.bp..., featuring membranes and biopolymers (basic+advanced) analyses in 2D! 🫓 🏄 🦠🧬🧶 🪢Awesome Collab with @vmonje.bsky.social 's group! Video intro HERE!
June 30, 2025 at 2:08 PM
Are you studying biophysical phenomena @interfaces ? Then check-out our newest toolbox doi.org/10.1016/j.bp..., featuring membranes and biopolymers (basic+advanced) analyses in 2D! 🫓 🏄 🦠🧬🧶 🪢Awesome Collab with @vmonje.bsky.social 's group! Video intro HERE!
Indeed exciting and intense conf. with an awesome speaker line-up. And many online questions 🪢🧶🧬🧵🙋#multiscaleRNA #compchem
Almost at the end of the exciting @cecamevents.bsky.social conference 'RNA Modelling across scales' at SISSA, Trieste, Italy! 🎉 Fantastic speakers and great science. Organized with @bussigio.bsky.social @marcodevivo.bsky.social #RNA
May 23, 2025 at 12:31 PM
Indeed exciting and intense conf. with an awesome speaker line-up. And many online questions 🪢🧶🧬🧵🙋#multiscaleRNA #compchem
This is a great opportiunity to contribute the Quitel2025, with an awesome speakers line-up @ young researchers from South America!!! #goMolecularModelingSA #compchemsky
CECAM is proud to cover the registration fee for 10 early-career researchers from South America to attend the #QUITEL2025 conference in Cartagena, Colombia, on July 14-18, 2025.
➡️ cobo.uniandes.edu.co/index.php/qu...
➡️ cobo.uniandes.edu.co/index.php/qu...
May 22, 2025 at 3:08 PM
This is a great opportiunity to contribute the Quitel2025, with an awesome speakers line-up @ young researchers from South America!!! #goMolecularModelingSA #compchemsky
Check out also the 𝟸𝙳𝚊𝚗𝚊𝚕𝚢𝚜𝚒𝚜 𝚝𝚞𝚝𝚘𝚛𝚒𝚊𝚕𝚜 as 𝐽𝑢𝑝𝑦𝑡𝑒𝑟 𝑁𝑏𝑠, we compiled for detailed guidance! in @github.com #compchem #compchemsky github.com/pyF4all/2Dan...
Kudos to: @icmabcsic.bsky.social @ifimacuam.bsky.social @ageinves.bsky.social @cesga-hpc.bsky.social and my collab @vmonje.bsky.social
Kudos to: @icmabcsic.bsky.social @ifimacuam.bsky.social @ageinves.bsky.social @cesga-hpc.bsky.social and my collab @vmonje.bsky.social
April 11, 2025 at 11:03 AM
Check out also the 𝟸𝙳𝚊𝚗𝚊𝚕𝚢𝚜𝚒𝚜 𝚝𝚞𝚝𝚘𝚛𝚒𝚊𝚕𝚜 as 𝐽𝑢𝑝𝑦𝑡𝑒𝑟 𝑁𝑏𝑠, we compiled for detailed guidance! in @github.com #compchem #compchemsky github.com/pyF4all/2Dan...
Kudos to: @icmabcsic.bsky.social @ifimacuam.bsky.social @ageinves.bsky.social @cesga-hpc.bsky.social and my collab @vmonje.bsky.social
Kudos to: @icmabcsic.bsky.social @ifimacuam.bsky.social @ageinves.bsky.social @cesga-hpc.bsky.social and my collab @vmonje.bsky.social
Glad to share and support this just-in-time initiative for storing, managing, sharing and reusing MD-derived data. FAIR principles will also facilitate reproducibility, promote knowledge sharing, among many others powered by AI- methods #compchem #md4all #compchemsky
@icmabcsic.bsky.social
@icmabcsic.bsky.social
A Comment from leaders in the field of biomolecular simulations brings attention to a need to establish FAIR principles for trajectory storage and sharing to favor reuse under an open science paradigm.
www.nature.com/articles/s41...
www.nature.com/articles/s41...
April 7, 2025 at 8:28 AM
Glad to share and support this just-in-time initiative for storing, managing, sharing and reusing MD-derived data. FAIR principles will also facilitate reproducibility, promote knowledge sharing, among many others powered by AI- methods #compchem #md4all #compchemsky
@icmabcsic.bsky.social
@icmabcsic.bsky.social
Reposted by Horacio V. Guzman
Reposted by Horacio V. Guzman
🎓 2 PhD Positions @scadsai.bsky.social
Join "Learning to Explain: Inference of Chemical Reaction Mechanisms"
under Prof. Dr. Julia Westermayr & Prof. Dr. Peter F. Stadler
📍 Leipzig | 75% TV-L E13 | Start: Fall 2025
🔗 Apply: scads.ai/about-us/job... (T14.1 & T14.2)
#PhDPosition #ML #CompChem
Join "Learning to Explain: Inference of Chemical Reaction Mechanisms"
under Prof. Dr. Julia Westermayr & Prof. Dr. Peter F. Stadler
📍 Leipzig | 75% TV-L E13 | Start: Fall 2025
🔗 Apply: scads.ai/about-us/job... (T14.1 & T14.2)
#PhDPosition #ML #CompChem
Job Offers - ScaDS.AI Dresden/Leipzig
Find your new dream position among the job offers at ScaDS.AI Dresden/Leipzig. We are looking forward to your application!
scads.ai
March 24, 2025 at 8:15 AM
🎓 2 PhD Positions @scadsai.bsky.social
Join "Learning to Explain: Inference of Chemical Reaction Mechanisms"
under Prof. Dr. Julia Westermayr & Prof. Dr. Peter F. Stadler
📍 Leipzig | 75% TV-L E13 | Start: Fall 2025
🔗 Apply: scads.ai/about-us/job... (T14.1 & T14.2)
#PhDPosition #ML #CompChem
Join "Learning to Explain: Inference of Chemical Reaction Mechanisms"
under Prof. Dr. Julia Westermayr & Prof. Dr. Peter F. Stadler
📍 Leipzig | 75% TV-L E13 | Start: Fall 2025
🔗 Apply: scads.ai/about-us/job... (T14.1 & T14.2)
#PhDPosition #ML #CompChem
are you studying biophysical phenomena @interfaces, then you can actually already use our newest toolbox! featuring membranes and biopolymers analyses in 2D! 🫓 🏄 🦠🧬🧶 🪢
2Danalysis: A toolbox for analysis of lipid membranes and biopolymers in two-dimensional space https://www.biorxiv.org/content/10.1101/2025.02.27.640563v1
March 13, 2025 at 4:09 PM
are you studying biophysical phenomena @interfaces, then you can actually already use our newest toolbox! featuring membranes and biopolymers analyses in 2D! 🫓 🏄 🦠🧬🧶 🪢
Reposted by Horacio V. Guzman
Our research presented today at @pasteur.fr ! @bussigio.bsky.social will give a seminar sharing our approaches to reconstruct #RNA dynamics using #moleculardynamics, #cryoEM, secondary structure prediction, and #DMS probing. Host @bonomimax.bsky.social
March 5, 2025 at 7:41 AM
Our research presented today at @pasteur.fr ! @bussigio.bsky.social will give a seminar sharing our approaches to reconstruct #RNA dynamics using #moleculardynamics, #cryoEM, secondary structure prediction, and #DMS probing. Host @bonomimax.bsky.social
Reposted by Horacio V. Guzman
Registration for the 2025 Accelerate conference in Toronto (Aug 11–14) opens soon! Be the first to know: zr2z766pxls.typeform.com/accelerate25
February 13, 2025 at 9:47 PM
Reposted by Horacio V. Guzman
👀
Unveiling the Complete Spectrum of SARS-CoV-2 Fusion Stages by In Situ Cryo-ET https://www.biorxiv.org/content/10.1101/2025.02.25.640151v1
February 28, 2025 at 6:23 AM
👀
extremely useful for huge systems! #HPC powered by 65k... #pushingScalingLimits #compchemsky #compchem
🤩 Highly optimized software running on a SOA #HPC cluster provides sufficient #computing power to #simulate #biomolecular systems at the mesoscale of viruses and organelles, and potentially small cells in the near future... Want to know more? Check out our paper 📑 in #JCC 🔗 doi.org/10.1002/jcc....
February 19, 2025 at 8:40 AM
extremely useful for huge systems! #HPC powered by 65k... #pushingScalingLimits #compchemsky #compchem
Reposted by Horacio V. Guzman
Check out this great BioEmu talk by @jjimenezluna.bsky.social and @yuxie.bsky.social in the VantAI lecture series. Thank you for hosting @mmbronstein.bsky.social @lucanaef.bsky.social
www.youtube.com/watch?v=8vsT...
www.youtube.com/watch?v=8vsT...
Emulation of protein equilibrium ensembles with generative deep learning | José Jiménez Luna, Yu Xie
YouTube video by VantAI
www.youtube.com
February 17, 2025 at 9:23 AM
Check out this great BioEmu talk by @jjimenezluna.bsky.social and @yuxie.bsky.social in the VantAI lecture series. Thank you for hosting @mmbronstein.bsky.social @lucanaef.bsky.social
www.youtube.com/watch?v=8vsT...
www.youtube.com/watch?v=8vsT...
awesome line-up!
View the Fifty-Five Molar Stuff in Molecular Interactions: Honoring Adrian Parsegian’s Work satellite meeting program, taking place today at #bps2025
The Biophysical Society > Meetings & Events > Annual Meeting > 2025 Annual Meeting > Program > Satellite Meetings > Fifty-Five Molar Stuff in Molecular Interactions: Honoring Adrian Parsegian’s Work
Friday, February 14, 8:00 AM - 5:00 PM Room 511ABC, Los Angeles Convention Center
buff.ly
February 16, 2025 at 6:00 PM
awesome line-up!
Reposted by Horacio V. Guzman
Check out our new study on water networks in high resolution cryo-EM RNA data!
@ Chiu Lab @ Das Lab
@ Chiu Lab @ Das Lab
January 25, 2025 at 8:01 PM
Check out our new study on water networks in high resolution cryo-EM RNA data!
@ Chiu Lab @ Das Lab
@ Chiu Lab @ Das Lab
Reposted by Horacio V. Guzman
Grappa is out: pubs.rsc.org/en/content/a...
We are looking forward to feedback from and extensions by the community! Try it out for your favorite (bio)molecules - ligands, post-translational modifications, metal-enzymes, DNA, ...
We are looking forward to feedback from and extensions by the community! Try it out for your favorite (bio)molecules - ligands, post-translational modifications, metal-enzymes, DNA, ...
Grappa – a machine learned molecular mechanics force field
Simulating large molecular systems over long timescales requires force fields that are both accurate and efficient. In recent years, E(3) equivariant neural networks have lifted the tension between co...
pubs.rsc.org
January 24, 2025 at 2:46 PM
Grappa is out: pubs.rsc.org/en/content/a...
We are looking forward to feedback from and extensions by the community! Try it out for your favorite (bio)molecules - ligands, post-translational modifications, metal-enzymes, DNA, ...
We are looking forward to feedback from and extensions by the community! Try it out for your favorite (bio)molecules - ligands, post-translational modifications, metal-enzymes, DNA, ...