Erik Faber MD PhD
fabermdphd.bsky.social
Erik Faber MD PhD
@fabermdphd.bsky.social
Onc fellow @mskcancercenter.bsky.social | #medchem 💊 PhD | aspiring #GIOnc doc | 🐶 dad | ex-HS teacher 🧑‍🏫 | @oslerresidency.bsky.social @umnmedchem.bsky.social‬ @dartmouthartsci.bsky.social alum | 🏳️‍🌈 he/him | #mdphd #doubledocs
If all models are wrong, will #organoids prove to be the most useful? A nice review of how we can take next steps to better assess clinical efficacy of drugs in a preclinical setting #medchem www.nature.com/articles/s41...
Human organoids as 3D in vitro platforms for drug discovery: opportunities and challenges - Nature Reviews Drug Discovery
Human organoids provide physiologically relevant, 3D models for studying disease mechanisms, drug efficacy and toxicity. This Review examines organoid generation methods, applications in preclinical d...
www.nature.com
November 17, 2025 at 2:54 AM
Age-old dilemma: HCO3 for AKI and met acidosis - Ya or Na? Still not life saving (need to reverse underlying etiology?) but less renal replacement needed

jamanetwork.com/journals/jam...
Sodium Bicarbonate for Severe Metabolic Acidemia and Acute Kidney Injury
This randomized clinical trial examines whether sodium bicarbonate infusion decreases day 90 all-cause mortality for patients with severe metabolic acidosis and moderate to severe acute kidney injury.
jamanetwork.com
November 9, 2025 at 1:22 AM
Impt for all of us ordering #ctDNA in #CRC: ctDNA-guided was NOT NON-inferior. Incredibly 1/2 ctDNA+ pts were escalated to FOLFOXIRI certainly w/o benefit - clearly we need better salvage treatments too

pubmed.ncbi.nlm.nih.gov/41115959/
Circulating tumor DNA-guided adjuvant therapy in locally advanced colon cancer: the randomized phase 2/3 DYNAMIC-III trial - PubMed
Adjuvant chemotherapy in stage III colon cancer provides uncertain benefit at the individual level. Circulating tumor DNA (ctDNA) may help refine risk-adjusted treatment selection. In this multicenter, randomized, phase 2/3 trial, patients with stage III colon cancer underwent ctDNA testing 5-6 week …
pubmed.ncbi.nlm.nih.gov
November 1, 2025 at 8:11 PM
I love a good #peptide inhibitor story, but given the expected poor #PK properties in the extended figures, I'd be willing to bet there's a small molecule-like metabolite driving most of this activity. Otherwise I worry there's something off-target #medchem

www.nature.com/articles/s41...
Targeting G1–S-checkpoint-compromised cancers with cyclin A/B RxL inhibitors - Nature
Dual cyclin A/B RxL inhibitors selectively kill small cell lung cancer cells and other cancer cells with high E2F activity.
www.nature.com
October 25, 2025 at 6:51 PM
Such a great classic #medchem story. Going after these atypical targets (e.g. phosphoinositide/lipid/carbohydrate engagers) with creative biological validation is what patients need to experience better outcomes.

pubs.acs.org/doi/full/10....
Discovery, Optimization, and Anticancer Activity of Lipid-Competitive Pleckstrin Homology Domain-Containing Family A Inhibitors
Phosphoinositide signaling is a major cellular mechanism controlling cancer cell viability, proliferation, and survival. Yet, inhibition of lipid kinases that produce oncogenic phosphoinositides has a...
pubs.acs.org
October 18, 2025 at 7:40 PM
Cool translational work about an important health topic. Another example of how physician scientists and chemists can collaborate to move the needle forward #medchem #mdphd #doubledocs

pubmed.ncbi.nlm.nih.gov/40864684/
Resolving fibrosis by stimulating HSC-dependent extracellular matrix degradation - PubMed
Tissue fibrosis arises from a critical imbalance between the production and breakdown of extracellular matrix (ECM) components. Whereas current strategies predominantly focus on curbing ECM production...
pubmed.ncbi.nlm.nih.gov
October 4, 2025 at 1:15 PM
Two new #CDK2 papers bringing me back to my PhD days (1/2):

www.embopress.org/doi/full/10....

More mechanistic studies of CDK2/Spy1 role in meiosis including impt SUN1 phos site. Still unclear if CDK2/Spy1 is most impt for scaffolding/localization or enzymatic activity, or, "por que no los dos?"
Speedy A governs non-homologous XY chromosome desynapsis as a unique prerequisite for XY loop-axis organization | The EMBO Journal
imageimageIn mouse spermatocytes, the X and Y chromosomes undergo rapid non-homologous synapsis and desynapsis during early pachynema. This study reveals that X-Y desynapsis initiated by the atypical ...
www.embopress.org
September 27, 2025 at 3:09 PM
So...are there new cutoffs for AM cortisol that I shouldn't cort stim folks? Why the change?

jamanetwork.com/journals/jam...
Adrenal Insufficiency in Adults: A Review
This Review summarizes the pathophysiology of adrenal insufficiency and approaches to diagnosis, treatment, and prevention of adrenal crisis.
jamanetwork.com
September 12, 2025 at 11:46 PM
Provocative work - should we be dosing some drugs differently in patients with less bowel then? #medchem #PK

pubs.acs.org/doi/10.1021/...
Property-Based Prediction Uncovers Intestinal Excretion as an Elimination Route of Small-Molecule Drugs
Hepatic and renal pathways are traditionally considered the primary routes of drug clearance. However, emerging evidence highlights the significant role of direct intestinal excretion of unchanged drugs and metabolites. Intestinal excretion is often unrecognized due to complications arising from unabsorbed drugs and direct biliary excretion. Consequently, the extent and mechanisms of intestinal excretion remain systematically underexplored. Using bile duct cannulated rats, we investigated intestinal excretion for a library of drugs and proposed a predicative decision tree based on molecular descriptors. Mechanistically, passive permeability and efflux transporters emerged as key drivers of intestinal excretion in rats. We also demonstrated that modulating a single functional group can alter the clearance pathways between intestinal and biliary excretion. The insights into intestinal excretion as a major clearance pathway for metabolically stable small-molecule drugs provide a more comprehensive understanding for drug clearance and offer new considerations for drug design and pharmacokinetic assessment.
pubs.acs.org
August 30, 2025 at 9:35 PM
Interesting survey with lots of #mdphd #doubledocs representation. Sad observations:
- vast majority have changed career plans based on federal changes
- supportive environment = $ - even for those new to this career can see this

www.nature.com/articles/s41...
Perspectives of biomedical trainees during a time of policy disruption - Nature Medicine
Nature Medicine - Perspectives of biomedical trainees during a time of policy disruption
www.nature.com
August 24, 2025 at 11:35 PM
Reposted by Erik Faber MD PhD
Tying a drug candidate structure around into a macrocycle is real work: so why bother doing for things like kinase inhibitors?
When Do You Need a Macrocycle, Anyway?
www.science.org
August 22, 2025 at 4:53 PM
Reposted by Erik Faber MD PhD
85% of all drug candidates that go into human trials fail. Expensively. This is the central fact of the entire research pharma industry.
Ok folks: what is your favorite fact that you share with people (maybe a bit too) eagerly?
August 20, 2025 at 1:18 PM
Always exciting to see the next frontier of KRASi - and seemingly to never underestimate the power of a water H-bond network. Would be nice to see what happens when they optimize the PK and if they're able to retain this potency #medchem #kras

pubmed.ncbi.nlm.nih.gov/40780213/
A pan-KRAS inhibitor and its derived degrader elicit multifaceted anti-tumor efficacy in KRAS-driven cancers - PubMed
KRAS remains a challenging therapeutic target with limited effective inhibitors currently available. Here, we report the discovery of MCB-294, a potent dual-state pan-KRAS inhibitor capable of binding...
pubmed.ncbi.nlm.nih.gov
August 16, 2025 at 7:23 PM
An exciting time for pancreatic cancer drug development - would like to see if similar findings can be seen in patient-derived #organoid models #pdac

pubmed.ncbi.nlm.nih.gov/40755028/
Two Shots on Goal: Combination of RAS Inhibition and Immunotherapy Drives Long-term Remission in Pancreatic Cancer - PubMed
Oncogenic KRAS is a hallmark of pancreatic cancer, one of the deadliest malignancies, and inhibition of oncogenic KRAS alone is, in most patients, not sufficient to eradicate the tumor. The two studie...
pubmed.ncbi.nlm.nih.gov
August 9, 2025 at 3:02 PM
An impt analysis of industry-sponsored research $ as federal $ dries up - appears 1% of physicians receive 1/3 of these funds. Will this mechanism be a feasible way to fill in funding gaps, especially considering the disparities already present? #mdphd #doubledocs

link.springer.com/article/10.1...
Disparities and Trends in Industry Sponsored Research Payments to Physicians 2014–2021 - Journal of General Internal Medicine
Journal of General Internal Medicine -
link.springer.com
August 2, 2025 at 2:03 PM
Reposted by Erik Faber MD PhD
What, about 2 1/2 months?
Vinay Prasad: That Was Fast
www.science.org
July 30, 2025 at 8:42 PM
A great development for an important class of targets - would love to see the next step showcasing therapeutic potential #medchem

www.science.org/doi/10.1126/...
Design of intrinsically disordered region binding proteins
Intrinsically disordered proteins and peptides play key roles in biology, but a lack of defined structures and high variability in sequence and conformational preferences have made targeting such syst...
www.science.org
July 27, 2025 at 8:22 PM
Reposted by Erik Faber MD PhD
Translation for non-scientists. The major funder for cancer research in the world is now only funding proposals that score in top 4 percent. They’re funding roughly 2/3 fewer proposals than they had in recent years. I suspect the funding line has actually never been this low.
“With these considerations, we expect to fund through the 4th percentile.”

There it is, in black and white, the destruction of cancer research in the US.
Funding policy for 2025 from NCI. Was just released: 4 percentile…maybe!
www.cancer.gov/grants-train...
July 24, 2025 at 12:20 AM
While this work was done in pharma, I wonder if it even has more applicability in academic drug discovery where often full HTS are cost prohibitive - this sort of iterative #ML #AI approach could save some significant time and $$$ #medchem

pubs.acs.org/doi/10.1021/...
Machine Learning-Assisted Iterative Screening for Efficient Detection of Drug Discovery Starting Points
High-throughput screening (HTS) remains central to small molecule lead discovery, but increasing assay complexity challenges the screening of large compound libraries. While retrospective studies have assessed active-learning-guided screening, extensive prospective validations are rare. Here, we report the first prospective evaluation of machine learning (ML)-assisted iterative HTS in a large-scale drug discovery project. Using a mass spectrometry-based assay for salt-inducible kinase 2, we screened just 5.9% of a two million-compound library in three batches and recovered 43.3% of all primary actives identified in a parallel full HTS─including all but one compound series selected by medicinal chemists. This demonstrates that ML-guided iterative screening can significantly reduce the experimental cost while maintaining hit discovery quality. Retrospective benchmarks further showed that the ML approach outperforms similarity-based methods in hit recovery and chemical space coverage. In summary, this study highlights the potential of ML-driven iterative HTS to improve efficiency also in large-scale drug discovery projects.
pubs.acs.org
July 19, 2025 at 12:18 PM
Came across this #kinase work, very cool for where in trials the compound is. Interesting commentary noting AI focus on #allosteric sites (notoriously hard to model de novo) although truthfully traditional type I cmpds were extended into a back pocket, so not type III #medchem

rdcu.be/ev0b6
A small-molecule TNIK inhibitor targets fibrosis in preclinical and clinical models - Nature Biotechnology
An AI-generated small-molecule inhibitor treats fibrosis in vivo and in phase I clinical trials.
www.nature.com
July 12, 2025 at 9:56 PM
An exciting frontier further recognizing bile acids (as steroid derivatives) as signals affecting tumor progression etc

www.sciencedirect.com/science/arti...
Bile acids activate cancer-associated fibroblasts and induce an immunosuppressive microenvironment in cholangiocarcinoma
Cholangiocarcinoma (CCA) is a highly lethal malignancy originating from the biliary tract and characterized with exposure to high levels of bile acids…
www.sciencedirect.com
June 30, 2025 at 4:25 PM
What an intriguing (and unexpected) MOA - congrats to the authors on their thoroughness #medchem
June 24, 2025 at 11:18 AM
I find it low-key fascinating how more conservatives and independents simultaneously believe government should pay more for healthcare but also that healthcare leadership is not to be trusted
link.springer.com/article/10.1...
Public Views of Health Care Coverage, Spending, and Leadership in the United States - Journal of General Internal Medicine
Journal of General Internal Medicine -
link.springer.com
June 9, 2025 at 7:44 AM