Daniel Guerrero-Romero
@dannbiostda.bsky.social
Postdoctoral scientist @ebi.embl.org | Saez Lab @saezlab.bsky.social | EAZPOD fellow | @astra-zeneca.bsky.social fellow | Interested in studying mathematical, ML approaches & single cell genomics in cancer, drug response and cell-to-cell communication. 🇲🇽🏳️🌈
Reposted by Daniel Guerrero-Romero
PREDICT is free and an extremely helpful clinical aid!
@paulpharoah.bsky.social deserves 👏
@paulpharoah.bsky.social deserves 👏
1/2 Our update of the PREDICT breast prognostic and treatment benefit model is now published by BMC Research Notes.
rdcu.be/ePXTJ
rdcu.be/ePXTJ
PREDICT breast v4.0: an update to the PREDICT breast prognostic model
rdcu.be
November 17, 2025 at 12:37 PM
PREDICT is free and an extremely helpful clinical aid!
@paulpharoah.bsky.social deserves 👏
@paulpharoah.bsky.social deserves 👏
Reposted by Daniel Guerrero-Romero
Friends in Germany! I want to tell you about the process of discovery, the creativity that it requires and the sense of awe that it inspires. Come check out my "The Gorilla in the Genome" lecture on Monday at the International Science Festival in Heidelberg.
www.geist-heidelberg.de/de/programm/...
www.geist-heidelberg.de/de/programm/...
November 15, 2025 at 11:26 PM
Friends in Germany! I want to tell you about the process of discovery, the creativity that it requires and the sense of awe that it inspires. Come check out my "The Gorilla in the Genome" lecture on Monday at the International Science Festival in Heidelberg.
www.geist-heidelberg.de/de/programm/...
www.geist-heidelberg.de/de/programm/...
Please have a look at our recent work from the @caldaslab.bsky.social done by the amazing @kevinjtu.bsky.social !
@caldaslab.bsky.social rocks!
@ims-mrl.bsky.social
@hebrewuniversity.bsky.social
@lautenbergc.bsky.social
The tumor microenvironment of 14,837 breast cancers is associated with clinical outcome independently of genomic subtypes: Cell Reports Medicine www.cell.com/cell-reports...
@ims-mrl.bsky.social
@hebrewuniversity.bsky.social
@lautenbergc.bsky.social
The tumor microenvironment of 14,837 breast cancers is associated with clinical outcome independently of genomic subtypes: Cell Reports Medicine www.cell.com/cell-reports...
The tumor microenvironment of 14,837 breast cancers is associated with clinical outcome independently of genomic subtypes
Tu et al. present a systematic analysis of the tumor microenvironment across 14,837
breast cancers, identifying distinct cellular patterns that predict disease-specific
survival independently of genom...
www.cell.com
November 10, 2025 at 8:26 PM
Please have a look at our recent work from the @caldaslab.bsky.social done by the amazing @kevinjtu.bsky.social !
Reposted by Daniel Guerrero-Romero
@caldaslab.bsky.social rocks!
@ims-mrl.bsky.social
@hebrewuniversity.bsky.social
@lautenbergc.bsky.social
The tumor microenvironment of 14,837 breast cancers is associated with clinical outcome independently of genomic subtypes: Cell Reports Medicine www.cell.com/cell-reports...
@ims-mrl.bsky.social
@hebrewuniversity.bsky.social
@lautenbergc.bsky.social
The tumor microenvironment of 14,837 breast cancers is associated with clinical outcome independently of genomic subtypes: Cell Reports Medicine www.cell.com/cell-reports...
The tumor microenvironment of 14,837 breast cancers is associated with clinical outcome independently of genomic subtypes
Tu et al. present a systematic analysis of the tumor microenvironment across 14,837
breast cancers, identifying distinct cellular patterns that predict disease-specific
survival independently of genom...
www.cell.com
November 10, 2025 at 6:57 PM
@caldaslab.bsky.social rocks!
@ims-mrl.bsky.social
@hebrewuniversity.bsky.social
@lautenbergc.bsky.social
The tumor microenvironment of 14,837 breast cancers is associated with clinical outcome independently of genomic subtypes: Cell Reports Medicine www.cell.com/cell-reports...
@ims-mrl.bsky.social
@hebrewuniversity.bsky.social
@lautenbergc.bsky.social
The tumor microenvironment of 14,837 breast cancers is associated with clinical outcome independently of genomic subtypes: Cell Reports Medicine www.cell.com/cell-reports...
Tomorrow! Do not miss exciting talks about AI in single cell genomics! We will hear about @teichlab.bsky.social research!
www.linkedin.com/posts/milner...
www.linkedin.com/posts/milner...
November 5, 2025 at 9:41 AM
Tomorrow! Do not miss exciting talks about AI in single cell genomics! We will hear about @teichlab.bsky.social research!
www.linkedin.com/posts/milner...
www.linkedin.com/posts/milner...
Reposted by Daniel Guerrero-Romero
🎉 The revised version of CORNETO, our unified Python framework for knowledge-driven network inference from omics data, is published in peer reviewed form
🔗 Paper: www.nature.com/articles/s42...
📖 News & Views: www.nature.com/articles/s42...
💻 Code: corneto.org
🧵 Thread 👇
🔗 Paper: www.nature.com/articles/s42...
📖 News & Views: www.nature.com/articles/s42...
💻 Code: corneto.org
🧵 Thread 👇
July 22, 2025 at 3:23 PM
🎉 The revised version of CORNETO, our unified Python framework for knowledge-driven network inference from omics data, is published in peer reviewed form
🔗 Paper: www.nature.com/articles/s42...
📖 News & Views: www.nature.com/articles/s42...
💻 Code: corneto.org
🧵 Thread 👇
🔗 Paper: www.nature.com/articles/s42...
📖 News & Views: www.nature.com/articles/s42...
💻 Code: corneto.org
🧵 Thread 👇
Reposted by Daniel Guerrero-Romero
We are writing to all the Chancellorship candidates of Cambridge University asking them to commit to the creation of University Ombudsman
The Ombudsman would investigate violations of free speech, victimisation because of protected beliefs & characteristics, as well as other serious abuses
The Ombudsman would investigate violations of free speech, victimisation because of protected beliefs & characteristics, as well as other serious abuses
June 21, 2025 at 6:25 PM
We are writing to all the Chancellorship candidates of Cambridge University asking them to commit to the creation of University Ombudsman
The Ombudsman would investigate violations of free speech, victimisation because of protected beliefs & characteristics, as well as other serious abuses
The Ombudsman would investigate violations of free speech, victimisation because of protected beliefs & characteristics, as well as other serious abuses
Reposted by Daniel Guerrero-Romero
Wyn is a dedicated academic with over 20 years of teaching and service to Cambridge. Not a celebrity, billionaire, or titled figure — he is one of us. A principled scholar with deep integrity, Neil has consistently championed the interests of students and staff alike.
This is the pledge card for the Chancellorship of Cambridge University
Details of policies behind the six pledges are here
21percent.org?p=2245
Chancellor should be helping to fix internal problems of the University, not leaving us with petrol fumes from a private jet
@adamboulton.bsky.social
Details of policies behind the six pledges are here
21percent.org?p=2245
Chancellor should be helping to fix internal problems of the University, not leaving us with petrol fumes from a private jet
@adamboulton.bsky.social
June 19, 2025 at 2:33 PM
Wyn is a dedicated academic with over 20 years of teaching and service to Cambridge. Not a celebrity, billionaire, or titled figure — he is one of us. A principled scholar with deep integrity, Neil has consistently championed the interests of students and staff alike.
Reposted by Daniel Guerrero-Romero
An enormous honour! Thank you @embo.org and @helloeacr.bsky.social!
This talk was only possible because of the amazing talent of @caldaslab.bsky.social and past #Caldasians!
This talk was only possible because of the amazing talent of @caldaslab.bsky.social and past #Caldasians!
@carloscaldas1960.bsky.social delivers the @embo.org Keynote Lecture at #EACR2025: 'Modelling breast cancers in space and time'
June 19, 2025 at 12:12 PM
An enormous honour! Thank you @embo.org and @helloeacr.bsky.social!
This talk was only possible because of the amazing talent of @caldaslab.bsky.social and past #Caldasians!
This talk was only possible because of the amazing talent of @caldaslab.bsky.social and past #Caldasians!
Excellent last keynote presentation by @carloscaldas1960.bsky.social highlighting recent key work from the @caldaslab.bsky.social It’s a privilege to have completed my PhD in such a remarkable research lab! Excited for the forthcoming publications—stay tuned! @helloeacr.bsky.social #EACR2025
June 20, 2025 at 8:19 AM
Excellent last keynote presentation by @carloscaldas1960.bsky.social highlighting recent key work from the @caldaslab.bsky.social It’s a privilege to have completed my PhD in such a remarkable research lab! Excited for the forthcoming publications—stay tuned! @helloeacr.bsky.social #EACR2025
Amazing presentation delivered by @masina_riccardo @helloeacr.bsky.social ! He presented our project using PDTCs as high-throughput drug screens, and it was selected as a proffered paper! @caldaslab.bsky.social
June 18, 2025 at 10:02 PM
Amazing presentation delivered by @masina_riccardo @helloeacr.bsky.social ! He presented our project using PDTCs as high-throughput drug screens, and it was selected as a proffered paper! @caldaslab.bsky.social
Reposted by Daniel Guerrero-Romero
@carloscaldas1960.bsky.social and the Caldasians will always #KeepResearchCurious and never stop doing good science!
#EACR2025
@helloeacr.bsky.social
#EACR2025
@helloeacr.bsky.social
June 18, 2025 at 6:48 PM
@carloscaldas1960.bsky.social and the Caldasians will always #KeepResearchCurious and never stop doing good science!
#EACR2025
@helloeacr.bsky.social
#EACR2025
@helloeacr.bsky.social
What a great day! @helloeacr.bsky.social and Caldasians assemble ! 💪🏻🌟
June 18, 2025 at 12:28 AM
What a great day! @helloeacr.bsky.social and Caldasians assemble ! 💪🏻🌟
Reposted by Daniel Guerrero-Romero
snDNAseq of 40,000 cells from 140 tumors from #METABRIC. @mauriziocallari.bsky.social and @sc10021.bsky.social will soon write a major papers from this work! @caldaslab.bsky.social continues to produce outstanding science!
June 17, 2025 at 11:03 PM
snDNAseq of 40,000 cells from 140 tumors from #METABRIC. @mauriziocallari.bsky.social and @sc10021.bsky.social will soon write a major papers from this work! @caldaslab.bsky.social continues to produce outstanding science!
Reposted by Daniel Guerrero-Romero
@allanlui.bsky.social has discovered a synthetic lethal hit for ER+ breast cancer driven by ZNF703 amplification! Major stuff! @caldaslab.bsky.social walking the walk!
June 17, 2025 at 11:06 PM
@allanlui.bsky.social has discovered a synthetic lethal hit for ER+ breast cancer driven by ZNF703 amplification! Major stuff! @caldaslab.bsky.social walking the walk!
Reposted by Daniel Guerrero-Romero
June 17, 2025 at 9:47 AM
Reposted by Daniel Guerrero-Romero
🔧 decoupler 2.0.6 is out thanks to @paubadiam.bsky.social, now as a core @scverse.bsky.social package scverse.org
This release includes a streamlined API aligned with scverse standards, updated vignettes, and a new one on pseudotime enrichment analysis 👇
decoupler.readthedocs.io/en/latest/
This release includes a streamlined API aligned with scverse standards, updated vignettes, and a new one on pseudotime enrichment analysis 👇
decoupler.readthedocs.io/en/latest/
June 12, 2025 at 6:36 AM
🔧 decoupler 2.0.6 is out thanks to @paubadiam.bsky.social, now as a core @scverse.bsky.social package scverse.org
This release includes a streamlined API aligned with scverse standards, updated vignettes, and a new one on pseudotime enrichment analysis 👇
decoupler.readthedocs.io/en/latest/
This release includes a streamlined API aligned with scverse standards, updated vignettes, and a new one on pseudotime enrichment analysis 👇
decoupler.readthedocs.io/en/latest/
Reposted by Daniel Guerrero-Romero
Such a beautiful project and a pleasure to work with @nguyenlab.bsky.social ! Please share and post our recent work @cp-cellreports.bsky.social from the @caldaslab.bsky.social and Rueda Lab!
I am excited to share the latest publication from the Nguyen, Caldas @carloscaldas1960.bsky.social and Rueda labs @ruedalab.bsky.social. This was a massive effort from a fantastic team and I’m grateful to everyone on the paper for their work on this project! doi.org/10.1016/j.ce...
#bcsm #PDTX
#bcsm #PDTX
Redirecting
doi.org
May 12, 2025 at 2:58 PM
Such a beautiful project and a pleasure to work with @nguyenlab.bsky.social ! Please share and post our recent work @cp-cellreports.bsky.social from the @caldaslab.bsky.social and Rueda Lab!
Reposted by Daniel Guerrero-Romero
“Bluesky has won”.
Please retweet… 😉
Please retweet… 😉
THREAD
The numbers are in. @bsky.app research sharing volumes vs X Formerly Twitter
In March 2024, on most days, Bluesky hosts more posts linked to research published in 2025 than X.
By quite a lot.
Release the Kraken...
#AcademicSky #HigherEd #Altmetrics
1/11
The numbers are in. @bsky.app research sharing volumes vs X Formerly Twitter
In March 2024, on most days, Bluesky hosts more posts linked to research published in 2025 than X.
By quite a lot.
Release the Kraken...
#AcademicSky #HigherEd #Altmetrics
1/11
March 28, 2025 at 8:13 AM
“Bluesky has won”.
Please retweet… 😉
Please retweet… 😉
Reposted by Daniel Guerrero-Romero
I would have never had the career I have had if it was not for Ian Ellis! He is in nearly all of my major papers. #METABRIC is in great part thanks to him! @caldaslab.bsky.social celebrates an amazing breast pathologist and unique colleague! Thank you, Ian!!
youtu.be/tft8ass_IZs?...
youtu.be/tft8ass_IZs?...
Prof I O Ellis - Major Breakthroughs in Breast Cancer Prognostification Over The Past 40 years:
YouTube video by Pathology Mini Tutorials
youtu.be
March 28, 2025 at 12:15 PM
I would have never had the career I have had if it was not for Ian Ellis! He is in nearly all of my major papers. #METABRIC is in great part thanks to him! @caldaslab.bsky.social celebrates an amazing breast pathologist and unique colleague! Thank you, Ian!!
youtu.be/tft8ass_IZs?...
youtu.be/tft8ass_IZs?...
Congrats @timcoorens.bsky.social ! Beautiful work!
The stomach is an organ unique in its function, environment and exposures. How does this affect the mutations that normal cells in the stomach acquire? What does this reveal about the origins of stomach cancer? These questions and more in our @nature.com paper:
www.nature.com/articles/s41...
www.nature.com/articles/s41...
The somatic mutation landscape of normal gastric epithelium - Nature
Whole-gene sequencing of microdissected gastric glands from individuals with and without gastric cancer reveals distinct patterns of somatic mutations and provides insights into influen...
www.nature.com
March 21, 2025 at 6:08 PM
Congrats @timcoorens.bsky.social ! Beautiful work!
Reposted by Daniel Guerrero-Romero
The stomach is an organ unique in its function, environment and exposures. How does this affect the mutations that normal cells in the stomach acquire? What does this reveal about the origins of stomach cancer? These questions and more in our @nature.com paper:
www.nature.com/articles/s41...
www.nature.com/articles/s41...
The somatic mutation landscape of normal gastric epithelium - Nature
Whole-gene sequencing of microdissected gastric glands from individuals with and without gastric cancer reveals distinct patterns of somatic mutations and provides insights into influen...
www.nature.com
March 20, 2025 at 2:59 PM
The stomach is an organ unique in its function, environment and exposures. How does this affect the mutations that normal cells in the stomach acquire? What does this reveal about the origins of stomach cancer? These questions and more in our @nature.com paper:
www.nature.com/articles/s41...
www.nature.com/articles/s41...