CCP-volumeEM
@ccp-volumeem.bsky.social
A community for computational practitioners working in volume electron microscopy (vEM)
Register for our community event on 3rd Nov 2025: https://bit.ly/CCP-volumeEM-Nov25
Join our mailing list at https://bit.ly/ccp-volume-em
Register for our community event on 3rd Nov 2025: https://bit.ly/CCP-volumeEM-Nov25
Join our mailing list at https://bit.ly/ccp-volume-em
Let's see how many computational volume EM talks we can get on the programme! Abstract submission deadline Friday March 6th 2026
#BioImageAnalysis #vem #volumeem
#BioImageAnalysis #vem #volumeem
📣 Abstract submissions for talks and poster presentations are officially *OPEN* for the 21st International Microscopy Congress (IMC21) 💥 🔬 🙌
Join our impressive line-up of speakers at this great event for the #microscopy community.
Abstract submissions: https://ow.ly/chvR50XvFxC
Join our impressive line-up of speakers at this great event for the #microscopy community.
Abstract submissions: https://ow.ly/chvR50XvFxC
November 21, 2025 at 2:46 PM
Let's see how many computational volume EM talks we can get on the programme! Abstract submission deadline Friday March 6th 2026
#BioImageAnalysis #vem #volumeem
#BioImageAnalysis #vem #volumeem
Reposted by CCP-volumeEM
Big news! Our week-long #bioimageanalysis bootcamp is BACK! Learn how to think about bioimage analysis like the pros do, learn what corrections you should (and shouldn't!) apply to your images, learn open source tools, and more. Apply NOW at broad.io/BAB3 for our January 2026 course!
October 14, 2025 at 9:31 PM
Big news! Our week-long #bioimageanalysis bootcamp is BACK! Learn how to think about bioimage analysis like the pros do, learn what corrections you should (and shouldn't!) apply to your images, learn open source tools, and more. Apply NOW at broad.io/BAB3 for our January 2026 course!
Reposted by CCP-volumeEM
Today I'm announcing a new digital textbook 📖🖥️, "An Introduction to OME-Zarr for Big Bioimaging Data".
ome-zarr-book.readthedocs.io
ome-zarr-book.readthedocs.io
An Introduction to OME-Zarr for Big Bioimaging Data
ome-zarr-book.readthedocs.io
November 4, 2025 at 3:33 PM
Today I'm announcing a new digital textbook 📖🖥️, "An Introduction to OME-Zarr for Big Bioimaging Data".
ome-zarr-book.readthedocs.io
ome-zarr-book.readthedocs.io
Reposted by CCP-volumeEM
A day in the dark side, from light to electron microscopy image analysis!
We're attending today the @ccp-volumeem.bsky.social meeting, discussing approaches to build a collaborative computational community for volume electron microscopy
We're attending today the @ccp-volumeem.bsky.social meeting, discussing approaches to build a collaborative computational community for volume electron microscopy
November 3, 2025 at 12:58 PM
A day in the dark side, from light to electron microscopy image analysis!
We're attending today the @ccp-volumeem.bsky.social meeting, discussing approaches to build a collaborative computational community for volume electron microscopy
We're attending today the @ccp-volumeem.bsky.social meeting, discussing approaches to build a collaborative computational community for volume electron microscopy
Reposted by CCP-volumeEM
Are you studying synapses in electron microscopy? Tired of annotating vesicles? We have the tool for you! SynapseNet implements automatic segmentation and analysis of vesicles and other synaptic structures and has now been published:
www.molbiolcell.org/doi/full/10....
www.molbiolcell.org/doi/full/10....
October 17, 2025 at 11:09 AM
Are you studying synapses in electron microscopy? Tired of annotating vesicles? We have the tool for you! SynapseNet implements automatic segmentation and analysis of vesicles and other synaptic structures and has now been published:
www.molbiolcell.org/doi/full/10....
www.molbiolcell.org/doi/full/10....
Reposted by CCP-volumeEM
🌟 Awesome vEM Images Competition deadline extended to Oct 6, 5 PM CT! 🌟
Submit to one or both categories:
1️⃣ The Power of EM
2️⃣ Bringing Meaning to the Data
🏆 $250 for 1st, $100 for 2nd & 3rd (each category)
🔗 www.volumeem.org/awesome-imag...
Details and last year's winning images ⬇️
Submit to one or both categories:
1️⃣ The Power of EM
2️⃣ Bringing Meaning to the Data
🏆 $250 for 1st, $100 for 2nd & 3rd (each category)
🔗 www.volumeem.org/awesome-imag...
Details and last year's winning images ⬇️
September 29, 2025 at 9:40 AM
🌟 Awesome vEM Images Competition deadline extended to Oct 6, 5 PM CT! 🌟
Submit to one or both categories:
1️⃣ The Power of EM
2️⃣ Bringing Meaning to the Data
🏆 $250 for 1st, $100 for 2nd & 3rd (each category)
🔗 www.volumeem.org/awesome-imag...
Details and last year's winning images ⬇️
Submit to one or both categories:
1️⃣ The Power of EM
2️⃣ Bringing Meaning to the Data
🏆 $250 for 1st, $100 for 2nd & 3rd (each category)
🔗 www.volumeem.org/awesome-imag...
Details and last year's winning images ⬇️
Reposted by CCP-volumeEM
📣 The Awesome vEM Images Competition is back!
Submit your images in one of two categories:
🖼️ The Power of vEM
🧠 Bringing Meaning to the Data (New!)
🏆 Prizes: $250 for 1st place, $100 for 2nd & 3rd in each category
📅 Deadline: Oct 2, 5PM CT
🔗 More details: www.volumeem.org/awesome-imag...
Submit your images in one of two categories:
🖼️ The Power of vEM
🧠 Bringing Meaning to the Data (New!)
🏆 Prizes: $250 for 1st place, $100 for 2nd & 3rd in each category
📅 Deadline: Oct 2, 5PM CT
🔗 More details: www.volumeem.org/awesome-imag...
Awesome image competition - 2025
📸 We are seeking impressive volume EM (vEM) images as part of our mission to promote our Volume EM Community Initiative and vEM techniques to the world! We'd love to offer you the opportunity to...
www.volumeem.org
August 24, 2025 at 3:37 PM
📣 The Awesome vEM Images Competition is back!
Submit your images in one of two categories:
🖼️ The Power of vEM
🧠 Bringing Meaning to the Data (New!)
🏆 Prizes: $250 for 1st place, $100 for 2nd & 3rd in each category
📅 Deadline: Oct 2, 5PM CT
🔗 More details: www.volumeem.org/awesome-imag...
Submit your images in one of two categories:
🖼️ The Power of vEM
🧠 Bringing Meaning to the Data (New!)
🏆 Prizes: $250 for 1st place, $100 for 2nd & 3rd in each category
📅 Deadline: Oct 2, 5PM CT
🔗 More details: www.volumeem.org/awesome-imag...
Reposted by CCP-volumeEM
📣 Join Us for the 6th Annual Volume EM Community Initiative Town Hall Meeting on October 9th, 2025 from 3-6pm BST / 10am-1pm ET. A key theme of this year’s Town Hall is strengthening connections across the global community.
👉 Register now on our website: www.volumeem.org/2025-town-ha...
👉 Register now on our website: www.volumeem.org/2025-town-ha...
August 23, 2025 at 9:18 AM
📣 Join Us for the 6th Annual Volume EM Community Initiative Town Hall Meeting on October 9th, 2025 from 3-6pm BST / 10am-1pm ET. A key theme of this year’s Town Hall is strengthening connections across the global community.
👉 Register now on our website: www.volumeem.org/2025-town-ha...
👉 Register now on our website: www.volumeem.org/2025-town-ha...
Reposted by CCP-volumeEM
Better ML for cryo-ET starts with better benchmarks.
We built a phantom cryo-ET dataset (~500 tomograms) + hosted a Kaggle challenge.
The result: community models beat expert tools.
Read more in the @natmethods.nature.com article that just came out:
🔗 doi.org/10.1038/s415...
We built a phantom cryo-ET dataset (~500 tomograms) + hosted a Kaggle challenge.
The result: community models beat expert tools.
Read more in the @natmethods.nature.com article that just came out:
🔗 doi.org/10.1038/s415...
A realistic phantom dataset for benchmarking cryo-ET data annotation - Nature Methods
A standardized, realistic phantom dataset consisting of ground-truth annotations for six diverse molecular species is provided as a community resource for cryo-electron-tomography algorithm benchmarki...
doi.org
August 26, 2025 at 2:22 PM
Better ML for cryo-ET starts with better benchmarks.
We built a phantom cryo-ET dataset (~500 tomograms) + hosted a Kaggle challenge.
The result: community models beat expert tools.
Read more in the @natmethods.nature.com article that just came out:
🔗 doi.org/10.1038/s415...
We built a phantom cryo-ET dataset (~500 tomograms) + hosted a Kaggle challenge.
The result: community models beat expert tools.
Read more in the @natmethods.nature.com article that just came out:
🔗 doi.org/10.1038/s415...
Reposted by CCP-volumeEM
Abstract submission #CBIAS2025 is closing on August 31st - we invite submissions on all topics related to #bioimageanalysis: new tools, biological discoveries using existing methods, and anything in between. Early-career researchers especially encouraged to submit!
www.crick.ac.uk/whats-on/cri...
www.crick.ac.uk/whats-on/cri...
Crick BioImage Analysis Symposium 2025
www.crick.ac.uk
August 8, 2025 at 7:02 PM
Abstract submission #CBIAS2025 is closing on August 31st - we invite submissions on all topics related to #bioimageanalysis: new tools, biological discoveries using existing methods, and anything in between. Early-career researchers especially encouraged to submit!
www.crick.ac.uk/whats-on/cri...
www.crick.ac.uk/whats-on/cri...
Reposted by CCP-volumeEM
Great to see one of our own Lucy Collinson picking up the Distinguished Scientist Award at M and M this year. Well deserved and a wonderful accolade. Congratulations Lucy! @royalmicrosoc.bsky.social
July 28, 2025 at 7:32 PM
Great to see one of our own Lucy Collinson picking up the Distinguished Scientist Award at M and M this year. Well deserved and a wonderful accolade. Congratulations Lucy! @royalmicrosoc.bsky.social
The registration for our #CCPvolumeEM community meeting is now open!
Join us in person in London (at
@crick.ac.uk) or online on 3rd November to discuss the computational needs of #volumeEM
www.eventbrite.co.uk/e/towards-a-...
#vEM #BioImageAnalysis
Join us in person in London (at
@crick.ac.uk) or online on 3rd November to discuss the computational needs of #volumeEM
www.eventbrite.co.uk/e/towards-a-...
#vEM #BioImageAnalysis
July 22, 2025 at 3:47 PM
The registration for our #CCPvolumeEM community meeting is now open!
Join us in person in London (at
@crick.ac.uk) or online on 3rd November to discuss the computational needs of #volumeEM
www.eventbrite.co.uk/e/towards-a-...
#vEM #BioImageAnalysis
Join us in person in London (at
@crick.ac.uk) or online on 3rd November to discuss the computational needs of #volumeEM
www.eventbrite.co.uk/e/towards-a-...
#vEM #BioImageAnalysis
Reposted by CCP-volumeEM
If you’ve ever wondered how we get high resolution images of incredibly tiny things, check out our latest video with @em-stp.bsky.social
They discuss how electron microscopes use beams of electrons to see things that light microscopes can’t.
www.youtube.com/watch?v=YMAe...
They discuss how electron microscopes use beams of electrons to see things that light microscopes can’t.
www.youtube.com/watch?v=YMAe...
Seeing the Invisible with Electron Microscopy
YouTube video by Francis Crick Institute
www.youtube.com
July 14, 2025 at 3:47 PM
If you’ve ever wondered how we get high resolution images of incredibly tiny things, check out our latest video with @em-stp.bsky.social
They discuss how electron microscopes use beams of electrons to see things that light microscopes can’t.
www.youtube.com/watch?v=YMAe...
They discuss how electron microscopes use beams of electrons to see things that light microscopes can’t.
www.youtube.com/watch?v=YMAe...
Reposted by CCP-volumeEM
As life sciences research becomes enmeshed in the age of AI, real experimental data are more valuable than ever. Read more in this month's Editorial.
www.nature.com/articles/s41...
www.nature.com/articles/s41...
Calling all data - Nature Methods
As life sciences research becomes enmeshed in the age of AI, real experimental data are more valuable than ever.
www.nature.com
July 14, 2025 at 4:04 PM
As life sciences research becomes enmeshed in the age of AI, real experimental data are more valuable than ever. Read more in this month's Editorial.
www.nature.com/articles/s41...
www.nature.com/articles/s41...
🚨 SAVE THE DATE 🚨
Inaugural CCP-volumeEM Community Meeting, 3rd November 2025 at @crick.ac.uk in London
"Towards a collaborative computational community for volume EM"
Timings: 12pm - 5.30pm, followed by networking reception
#volumeEM #BioImageAnalysis #VEM #CCPvolumeEM #CoSeC
Inaugural CCP-volumeEM Community Meeting, 3rd November 2025 at @crick.ac.uk in London
"Towards a collaborative computational community for volume EM"
Timings: 12pm - 5.30pm, followed by networking reception
#volumeEM #BioImageAnalysis #VEM #CCPvolumeEM #CoSeC
July 9, 2025 at 3:22 PM
🚨 SAVE THE DATE 🚨
Inaugural CCP-volumeEM Community Meeting, 3rd November 2025 at @crick.ac.uk in London
"Towards a collaborative computational community for volume EM"
Timings: 12pm - 5.30pm, followed by networking reception
#volumeEM #BioImageAnalysis #VEM #CCPvolumeEM #CoSeC
Inaugural CCP-volumeEM Community Meeting, 3rd November 2025 at @crick.ac.uk in London
"Towards a collaborative computational community for volume EM"
Timings: 12pm - 5.30pm, followed by networking reception
#volumeEM #BioImageAnalysis #VEM #CCPvolumeEM #CoSeC
Reposted by CCP-volumeEM
We now have a mailing list for anyone who'd like to get involved with the volume EM collaborative computational community!
Sign up at bit.ly/ccp-volume-em to hear all the latest news and opportunities
Sign up at bit.ly/ccp-volume-em to hear all the latest news and opportunities
June 27, 2025 at 4:07 PM
We now have a mailing list for anyone who'd like to get involved with the volume EM collaborative computational community!
Sign up at bit.ly/ccp-volume-em to hear all the latest news and opportunities
Sign up at bit.ly/ccp-volume-em to hear all the latest news and opportunities
Reposted by CCP-volumeEM
If you work in #VolumeEM, please fill in our survey to help us build a Collaborative Computational Project for volumeEM!
Survey link: forms.office.com/e/eMAJGCKUnc
we're aiming to identify the needs of the community in order to build a roadmap for all-things data-related in #vEM
Survey link: forms.office.com/e/eMAJGCKUnc
we're aiming to identify the needs of the community in order to build a roadmap for all-things data-related in #vEM
May 29, 2025 at 7:14 PM
If you work in #VolumeEM, please fill in our survey to help us build a Collaborative Computational Project for volumeEM!
Survey link: forms.office.com/e/eMAJGCKUnc
we're aiming to identify the needs of the community in order to build a roadmap for all-things data-related in #vEM
Survey link: forms.office.com/e/eMAJGCKUnc
we're aiming to identify the needs of the community in order to build a roadmap for all-things data-related in #vEM
Reposted by CCP-volumeEM
Exciting next steps in #volumeEM data analysis! A way to remove the data bottleneck..🍾👏 #mmc2025
@ccp-volumeem.bsky.social @martinjones.bsky.social
@ccp-volumeem.bsky.social @martinjones.bsky.social
July 2, 2025 at 2:48 PM
Exciting next steps in #volumeEM data analysis! A way to remove the data bottleneck..🍾👏 #mmc2025
@ccp-volumeem.bsky.social @martinjones.bsky.social
@ccp-volumeem.bsky.social @martinjones.bsky.social
We now have a mailing list for anyone who'd like to get involved with the volume EM collaborative computational community!
Sign up at bit.ly/ccp-volume-em to hear all the latest news and opportunities
Sign up at bit.ly/ccp-volume-em to hear all the latest news and opportunities
June 27, 2025 at 4:07 PM
We now have a mailing list for anyone who'd like to get involved with the volume EM collaborative computational community!
Sign up at bit.ly/ccp-volume-em to hear all the latest news and opportunities
Sign up at bit.ly/ccp-volume-em to hear all the latest news and opportunities
Reposted by CCP-volumeEM
Thanks to everyone who has filled this in already - if you haven't, and you work in #volumeEM, please help us by filling in this survey about all-things data (analysis, processing, storage, transfer and anything else to do with data!)
If you work in #VolumeEM, please fill in our survey to help us build a Collaborative Computational Project for volumeEM!
Survey link: forms.office.com/e/eMAJGCKUnc
we're aiming to identify the needs of the community in order to build a roadmap for all-things data-related in #vEM
Survey link: forms.office.com/e/eMAJGCKUnc
we're aiming to identify the needs of the community in order to build a roadmap for all-things data-related in #vEM
June 9, 2025 at 11:07 AM
Thanks to everyone who has filled this in already - if you haven't, and you work in #volumeEM, please help us by filling in this survey about all-things data (analysis, processing, storage, transfer and anything else to do with data!)
Reposted by CCP-volumeEM
Need help with bioimage analysis? Contact the UK Euro-BioImaging Node to see how we can help!
www.eurobioimaging-access.eu/nodes/uk-node
www.eurobioimaging-access.eu/nodes/uk-node
May 30, 2025 at 3:14 PM
Need help with bioimage analysis? Contact the UK Euro-BioImaging Node to see how we can help!
www.eurobioimaging-access.eu/nodes/uk-node
www.eurobioimaging-access.eu/nodes/uk-node
Reposted by CCP-volumeEM
If you work in #VolumeEM, we'd be very grateful if you could fill in our survey so we can better understand the computational needs of the #vEM community
#BioImageAnalysis #ResearchSoftwareEngineering #ElectronMicroscopy
#BioImageAnalysis #ResearchSoftwareEngineering #ElectronMicroscopy
If you work in #VolumeEM, please fill in our survey to help us build a Collaborative Computational Project for volumeEM!
Survey link: forms.office.com/e/eMAJGCKUnc
we're aiming to identify the needs of the community in order to build a roadmap for all-things data-related in #vEM
Survey link: forms.office.com/e/eMAJGCKUnc
we're aiming to identify the needs of the community in order to build a roadmap for all-things data-related in #vEM
May 29, 2025 at 7:18 PM
If you work in #VolumeEM, we'd be very grateful if you could fill in our survey so we can better understand the computational needs of the #vEM community
#BioImageAnalysis #ResearchSoftwareEngineering #ElectronMicroscopy
#BioImageAnalysis #ResearchSoftwareEngineering #ElectronMicroscopy
If you work in #VolumeEM, please fill in our survey to help us build a Collaborative Computational Project for volumeEM!
Survey link: forms.office.com/e/eMAJGCKUnc
we're aiming to identify the needs of the community in order to build a roadmap for all-things data-related in #vEM
Survey link: forms.office.com/e/eMAJGCKUnc
we're aiming to identify the needs of the community in order to build a roadmap for all-things data-related in #vEM
May 29, 2025 at 7:14 PM
If you work in #VolumeEM, please fill in our survey to help us build a Collaborative Computational Project for volumeEM!
Survey link: forms.office.com/e/eMAJGCKUnc
we're aiming to identify the needs of the community in order to build a roadmap for all-things data-related in #vEM
Survey link: forms.office.com/e/eMAJGCKUnc
we're aiming to identify the needs of the community in order to build a roadmap for all-things data-related in #vEM