Francesco Calzaferri (he/him)
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franczf.bsky.social
Francesco Calzaferri (he/him)
@franczf.bsky.social
🧪 MedChem postdoc
🧫 Drug delivery 🧬Epigenetics ⚗️ P2X7 receptor
@dublincityuniversity - Dublin 🇨🇮
@fondationarc @cnrs - Montpellier 🇨🇵
MSCA PhD @purinesdx - Madrid 🇪🇸
From 🇮🇹
Pinned
A new tool for epigenetic reprogramming? 😎

We have finally found out how to increase our flavanones stability and obtain DNA methyltransferase inhibitors with nanomolar potency 🥳

pubs.acs.org/doi/full/10....
Rational Design and Synthesis of Highly Stable Haloflavanone DNA Methyltransferase Inhibitors Inducing Tumor Suppressor Gene Re-expression in Cancer Cells
DNA methylation is an epigenetic modification involved in cancer. The clinically approved nucleoside DNA methyltransferase (DNMT) inhibitors 5-azacytidine and 5-aza-2′-deoxycytidine lack selectivity and stability, resulting in high toxicity. Previously, we discovered 3-halo-3-nitroflavanones as non-nucleoside DNMT inhibitors. Here, we designed and synthesized a new series of 2-substituted haloflavanones to increase compound chemical stability. Moreover, replacement of the nitro by an additional halogen enhanced compound potency. Indeed, compound 34b (anti-3-bromo-3-chloro-2-methoxyflavanone) exhibited submicromolar DNMT3A inhibitory activity, upregulated the expression of DNMT-targeted genes, and impaired cell proliferation. Importantly, 34b triggered a critical cell cycle arrest in the G1/S transition, notably in p53-depleted HCT-116 colorectal cancer cells, which paves the way for novel therapeutic opportunities. 34b competes for the same DNMT catalytic pocket as confirmed by saturation transfer difference-nuclear magnetic resonance, but assuming different docking poses as shown by computational studies. Overall, the high stability and activity of 34b make it a promising DNMT inhibitor for anticancer research and therapy.
pubs.acs.org
The Young Investigator Award I received last week in Galway by the Society for Free Radical Research - Europe (SFRR-E) and @elsevierconnect.bsky.social . It was such a surprise! Thanks a lot! ✨
June 13, 2025 at 8:13 AM
Our Carbon Dots are also at the 22nd SFRR-I Biennial Meeting in Galway! ✨

@sfrre-ecr.bsky.social @researchireland.ie @dcu-lsi.bsky.social
June 4, 2025 at 6:11 PM
A new tool for epigenetic reprogramming? 😎

We have finally found out how to increase our flavanones stability and obtain DNA methyltransferase inhibitors with nanomolar potency 🥳

pubs.acs.org/doi/full/10....
Rational Design and Synthesis of Highly Stable Haloflavanone DNA Methyltransferase Inhibitors Inducing Tumor Suppressor Gene Re-expression in Cancer Cells
DNA methylation is an epigenetic modification involved in cancer. The clinically approved nucleoside DNA methyltransferase (DNMT) inhibitors 5-azacytidine and 5-aza-2′-deoxycytidine lack selectivity and stability, resulting in high toxicity. Previously, we discovered 3-halo-3-nitroflavanones as non-nucleoside DNMT inhibitors. Here, we designed and synthesized a new series of 2-substituted haloflavanones to increase compound chemical stability. Moreover, replacement of the nitro by an additional halogen enhanced compound potency. Indeed, compound 34b (anti-3-bromo-3-chloro-2-methoxyflavanone) exhibited submicromolar DNMT3A inhibitory activity, upregulated the expression of DNMT-targeted genes, and impaired cell proliferation. Importantly, 34b triggered a critical cell cycle arrest in the G1/S transition, notably in p53-depleted HCT-116 colorectal cancer cells, which paves the way for novel therapeutic opportunities. 34b competes for the same DNMT catalytic pocket as confirmed by saturation transfer difference-nuclear magnetic resonance, but assuming different docking poses as shown by computational studies. Overall, the high stability and activity of 34b make it a promising DNMT inhibitor for anticancer research and therapy.
pubs.acs.org
May 27, 2025 at 7:08 AM
Reposted by Francesco Calzaferri (he/him)
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May 9, 2025 at 12:20 PM
Reposted by Francesco Calzaferri (he/him)
Registrations are now open for #ChemBioParis2025 in Paris, October 6-9, 2025. Sign up here: chembioparis2025.com – Early bird ends June 10 with reduced fees for @icbschembio.bsky.social - euchems.eu - @eu-openscreen.bsky.social - @scf-chembio.bsky.social - #ChemBioEvent
April 30, 2025 at 11:19 AM
Reposted by Francesco Calzaferri (he/him)
US colleagues: Looking to launch or move your lab to France? The ARC Foundation is recruiting outstanding US-based scientists to lead research in oncology. Generous support & relocation help included.
Details here: www.fondation-arc.org/projets/recr...
Interested? Contact us!
April 30, 2025 at 8:34 AM
I have finally a professional picture! 🤓 Ahaha
But I don't wanna remove the picture of me in the Katherine Gorges in Australia 🥲🦘
April 24, 2025 at 5:24 PM
What do we do in our research group? ⚗️🧪🧬

Our group leader Prof Silvia Giordani tells you about it in this video! 👇🏻

I enjoyed so much this filming session 🤣 and the result is amazing!

@dublincityuni.bsky.social @dcu-lsi.bsky.social @dcuresearch.bsky.social

youtu.be/sAAvrxyg-BI?...
Fighting Cancer with Nanotechnology – Prof Silvia Giordani
YouTube video by Dublin City University
youtu.be
April 16, 2025 at 6:54 PM
We are greatful to Sean Duke and The Irish Times for highlighting the latest paper from the Giordani group! 🎉

@sciencespinning.bsky.social
@irishtimes.com
@dublincityuni.bsky.social
@researchireland.bsky.social
April 8, 2025 at 2:07 PM
The Giordani group has just published a new paper on Nanoscale! 📝

We have developed B/N carbon nano-onions properly functionalised to target brest cancer cells 🧫

Go have a look! 🤗🎉

@dcu-lsi.bsky.social @dublincityuni.bsky.social

pubs.rsc.org/en/content/a...
B/N-doped carbon nano-onions as nanocarriers for targeted breast cancer therapy
Cancer is one of the leading causes of death worldwide and represents a significant burden on global health systems. Many existing chemotherapy treatments come with severe side effects, ranging from h...
pubs.rsc.org
April 7, 2025 at 12:54 PM
Last week I introduced myself and my research to the LSI-Café at @dcu-lsi.bsky.social . I received such a warm welcome from everyone! Thank you a lot! Happy to be part of @dublincityuni.bsky.social 🧬⚗️🧪
April 1, 2025 at 5:08 PM
I've just read from editor-in-chief Craig Lindsley that some tenure-track researchers in the US received termination notices. This is so sad. I imagine how this will impact the careers of young researchers in academia like me in the US.
February 17, 2025 at 9:00 PM
Reposted by Francesco Calzaferri (he/him)
Degenhardt et al. report on AFM+machine learning method that decodes dynamic RNA structures without crystallization. Using AFM topography & deep neural networks, it identifies multiple conformations and predicts accuracy. The advance aids understanding RNA flexibility. www.nature.com/articles/s41...
Determining structures of RNA conformers using AFM and deep neural networks - Nature
HORNET, a method that uses unsupervised machine learning and deep neural networks to analyse atomic force microscopy data enables structural determination of RNA molecules in multiple conformations.
www.nature.com
December 19, 2024 at 6:37 PM
I've dedicated my last years to explore the flavanone scaffold as original and curious DNMT inhibitor.

Here's finally the 1st paper of the efforts Alex & I have made to try to improve these molecules.

But beware! Hopefully more will come soon! 🧑🏻‍🔬 Enjoy!

www.sciencedirect.com/science/arti...
3-Halo-3-nitro-aza/thioflavanones: DNMT inhibitors with a two-site binding mode in the hDNMT3A catalytic pocket
Flavonoid derivatives are natural product analogues that have shown great interest for therapeutic applications as modulators of DNA methylation. In t…
www.sciencedirect.com
December 1, 2024 at 6:47 PM