Vijay Ramani
@vram142.bsky.social
1.7K followers
580 following
96 posts
PI @ Gladstone Institutes & UCSF. Molecular technologies & the genomics / molecular biology / biochemistry of gene regulation. Views here mine & do not represent those of my affiliated institutions.
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Reposted by Vijay Ramani
Reposted by Vijay Ramani
Reposted by Vijay Ramani
Reposted by Vijay Ramani
Jop Kind
@jopkind.bsky.social
· 25d
MeCP2 binding and genome–lamina reorganization precede long gene activation during mouse corticogenesis
During corticogenesis, neural gene expression is tightly coordinated by chromatin and epigenetic changes, whose misregulation can lead to neurodevelopmental disorders[1][1]–[4][2]. The role of spatial...
doi.org
Reposted by Vijay Ramani
Nature Methods
@natmethods.nature.com
· Sep 12
Coupling CRISPR scanning with targeted chromatin accessibility profiling using a double-stranded DNA deaminase - Nature Methods
This paper presents TDAC-seq, a targeted chromatin-accessibility-profiling method using cytidine deaminases and long-read sequencing, to resolve the effects of CRISPR edits on single chromatin fibers.
www.nature.com
Reposted by Vijay Ramani
Reposted by Vijay Ramani
Dan Portik
@dportik.bsky.social
· Sep 10
TIPP-SD: A New Method for Species Detection in Microbiomes
In this study, we present TIPP-SD (i.e., TIPP for Species Detection), a new technique for species detection in a microbiome sample. TIPP-SD uses a modified version of TIPP3, which is a recently develo...
www.biorxiv.org
Vijay Ramani
@vram142.bsky.social
· Aug 17