Lilly Cummins
@lillycummins.bsky.social
940 followers 370 following 52 posts
she/her | Postdoc in Sheppard Lab @ University of Oxford | bacterial evolutionary genomics, pangenomes, AMR | I believe in equality
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Reposted by Lilly Cummins
📣 Reminder of the below fully-funded PhD studentships in exposome immunology! Projects interfacing with other areas (e.g. the human microbiome) are also on offer. Please reach out if you have any questions.

Applications due 2 Dec 2025 📣
🎓 6x fully-funded 4-year PhD studentships 🎓

We are recruiting our first cohort of PhD students to start Oct 2026.

Students will shape their own projects within supervisory teams spanning the universities of Manchester & Oxford.

www.findaphd.com/phds/program/mrc-core-in-exposome-immunology/?p6899
FindAPhD : MRC CoRE in Exposome Immunology at The University of Manchester
Apply for a PhD: MRC CoRE in Exposome Immunology at The University of Manchester
www.findaphd.com
Reposted by Lilly Cummins
Note it in your calendars! Aug 3-5, 2026. Excited to bring back MEEHubs to a hub near you (Switzerland, USA, Canada, Mexico, UK, Ukraine, or virtual only)‼️
We’re back! ✨ The next #MeeHubs26 is coming with 7 hubs across the globe and incredible lineups at each. Can’t wait to share more soon! meehubs.org
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Reposted by Lilly Cummins
After being with the journal since its very inception, the time has come for me to step back from Microbial Genomics. This is a wonderful opportunity to have a leadership role in one of the leading journals for microbial genomics research

microbiologysociety.org/news/society...
<i>Microbial Genomics </i> Deputy Editor-in-Chief: Call for Expressions of interest
microbiologysociety.org
Great science-filled afternoon at @microbiologysociety.org HQ watching finalists present at the Early Career Microbiologist of the Year Finals! All the speakers gave fantastic talks on a wide variety of subjects 🦠🧫🔬
Photograph taken from within a seated audience showing a screen with ‘EARLY CAREER MICROBIOLOGIST OF THE YEAR TALK FINAL’
Reposted by Lilly Cummins
Applications for Outreach and Engagement grant are closing tomorrow at 23.59 BST. Members can apply for up to £1000 to support relevant science outreach or public engagement initiatives. Check your eligibility and apply now: microb.io/OutreachandE....
Outreach and Engagement Grant
Eligible members can apply for up to £1000 to support relevant science outreach or public engagement initiatives that engage new audiences in the art and science in any aspect of microbiology.…
microb.io
Reposted by Lilly Cummins
Our fantastic @sheppardlab.bsky.social DPhil student Madison Goforth gives us a global overview of Campylobacter source attribution and the spread of AMR 🌎💊🌎 #CampyUK2025 @microbiologysociety.org @ineosoxford.bsky.social @biology.ox.ac.uk
Reposted by Lilly Cummins
Are antibiotics a dead parrot? 🦜Prof Aidan Taylor kicks off the ‘From farm to fork’ session discussing Campylobacter AMR and vaccine development 🧫💉 #CampyUK2025 @microbiologysociety.org @ineosoxford.bsky.social @biology.ox.ac.uk
Reposted by Lilly Cummins
Another speaker sponsored by @microbiologysociety.org , Prof Sitara Ajjampur talks about age and exposure to infected poultry in backyard chicken flocks as determinants of Campylobacter infections in children in rural south India 🐓🇮🇳 #CampyUK2025 @ineosoxford.bsky.social @biology.ox.ac.uk
Reposted by Lilly Cummins
@sheppardlab.bsky.social collaborator Francesca Schiaffino, sponsored by @microbiologysociety.org explains patterns in persistent Campylobacter infections in LMICs, using data from Peru to investigate complex long-term carriage 🐓🇵🇪 #CampyUK2025 @ineosoxford.bsky.social @biology.ox.ac.uk
Reposted by Lilly Cummins
Fascinating talk from keynote speaker Dr Christine Szymanski about how Campylobacter jejuni has evolved to colonise and survive the breastfed infant gut #CampyUK2025 @ineosoxford.bsky.social @biology.ox.ac.uk
Reposted by Lilly Cummins
Our very own @sheppardlab.bsky.social DPhil candidate Amy Douglas representing the @ukhsa.bsky.social giving us some Campy stats 🤩🤩🤩 #CampyUK2025 @ineosoxford.bsky.social @biology.ox.ac.uk
Reposted by Lilly Cummins
And we’re off! Excited for a day full of all things Campy. The Sheppard lab @sheppardlab.bsky.social welcomes everyone to CampyUK, the first conference in the new Life and Mind Building @ox.ac.uk
Congrats Tabea! Very well deserved 🥳
‘We identified clone-specific metabolic capabilities… that may contribute to the ecological success and dissemination of most prevalent ExPEC clones’
Identification of specific metabolic capacities associated with major extraintestinal pathogenic Escherichia coli lineages https://www.biorxiv.org/content/10.1101/2025.09.14.675865v1
Yes! Jack and Lauren both gave excellent talks, you should be a very proud supervisor!
Amazing news Rachel! Very well deserved 👏
Reposted by Lilly Cummins
#CampyUK2025 there are still one or two spaces for late breaking posters - please contact us!
Reposted by Lilly Cummins
📣 Keynote speaker announced #CampyUK2025

Dr Aidan Taylor @uniofreading.bsky.social ‘Taming Campylobacter: From Molecular Insights to Real-World Interventions’

24-25th Sep, register now!

campyuk.web.ox.ac.uk/registration

@biology.ox.ac.uk @ineosoxford.bsky.social @microbiologysociety.org
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campyuk.web.ox.ac.uk
Reposted by Lilly Cummins
Delighted to have this review out with @jpjhall.bsky.social!

We discuss the risk of transmission of antimicrobial resistance in the hospital sink drain microbiome, highlight studies providing evidence of transfer, and consider strategies to mitigate these risks 🪠🦠

doi.org/10.1038/s442...
The hospital sink drain microbiome as a melting pot for AMR transmission to nosocomial pathogens - npj Antimicrobials and Resistance
npj Antimicrobials and Resistance - The hospital sink drain microbiome as a melting pot for AMR transmission to nosocomial pathogens
doi.org
Reposted by Lilly Cummins
📣 Keynote speaker announced

Prof David Kelly @sheffielduni.bsky.social will join us at #CampyUK2025 to discuss "Campylobacter and Oxygen: A Double-Edged Sword."

24/25th Sep, register now!

campyuk.web.ox.ac.uk/speakers#col...

@biology.ox.ac.uk @microbiologysociety.org @ineosoxford.bsky.social
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campyuk.web.ox.ac.uk
One week extension to submit abstracts and benefit from the early bird discounted registration fee!
📣 The deadline for abstract submission and early bird registration has been extended to 7th August. Registration fees will increase after this date! Visit campyuk.web.ox.ac.uk/home to secure your place! #microsky @biology.ox.ac.uk @microbiologysociety.org @ineosoxford.bsky.social
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campyuk.web.ox.ac.uk
Thanks for the feedback! We’ll definitely correct this for publication ☺️
We hope that GOLD-GWAS will be a useful tool for understanding pathogen evolution more broadly and takes us a step closer to achieving accurate genotype-phenotype mapping 5/5 #microsky