Nu nog op street-/pathview

Besides learning #BASH, I explored #R packages such as #tidyverse, #ggplot2, #DESeq2, #GEOquery, #org.Hs.eg.db, #clusterProfiler, #EnhancedVolcano, #celldex, #pheatmap, and #pathview, which open doors to further exploration of #RNASeq data. #Bioinformatics #RProgramming #Linux

Thank you so much for reaching out! I’m still in the early stages of learning RNA-seq analysis, but your tools sound fascinating. I’ll definitely look into Pathview & SBGNview as I advance in my journey. If I need help or customization later, I’ll be sure to reach out. Thanks again!

Have y'all checked our new pathway visualization tools for omics analysis?
Pathview and SBGNview?
We are working on new versions. Let me know if I can help you out? Or if you're looking for something more custom.

Besides basic #RProgramming ( #tidyverse · #ggplot2 · #DESeq2 · #GEOquery · #org.Hs.eg.db · #clusterProfiler · #DoubletFinder · #EnhancedVolcano · #celldex · #pheatmap · #SingleR · #pathview) for #RNASeq · advanced packges #Seurat · #SeuratExtend · #monocle3 open new insight into #SingleCellAnalysis

Differential statistics (DESeq2 and EdgeR), Pathway enrichment (GAGE), and Pathway visualization in pathview are included by Default in MetaCerberus. Here is example pathview compare Exiguobacterium vs Rhizobium

New MetaCerberus update v1.2
- Updated VOG and pVOG
- Fixed Mac installer
- Fixed fastq and COGs
- Now with Prodigal-gv and Phannote for phages
- waiting on reviewers for peer-review paper
github.com/raw-lab/meta...

August pre-print
- www.biorxiv.org/content/10.1...

With pathview and gage R.