#RNAstructure
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jmbujnicki.bsky.social
Exciting news for the RNA research community!

The Human RNome Project has been launched: a global effort to map all human RNAs and their chemical modifications. Proud to support it and contribute to the article in Genome Biology doi.org/10.1186/s130...
#RNA #bioinformatics #RNAstructure #modomics
Unlocking the regulatory code of RNA: launching the Human RNome Project - Genome Biology
The human RNome, the complete set of RNA molecules in human cells, arises through complex processing and includes diverse molecular species. While research traditionally focuses on four canonical nucl...
genomebiology.biomedcentral.com
October 25, 2025 at 10:27 PM
aandrzejewskaa.bsky.social
Hi! 👋 I'm new here 👋
I recently defended my PhD and I'm loved in #RNA structures in vivo 🫶 Very excited to share my two articles at NAR (results of my PhD)!
1📎 academic.oup.com/nar/article/...
2📎 academic.oup.com/nar/article/...
The first #RNAstructure of Ty1 and Ty3 LTR #retrotransposon genomes!
November 20, 2024 at 4:49 PM
quaidmorris.bsky.social
#RNABenasque RL: many constrained folding programs are now available: UNAfold, RNAstructure, Vienna 2.2+ has generalized ones now!
November 17, 2024 at 4:56 AM
jsantoyo.bsky.social
SEISMICgraph: a web-based tool for RNA structure data visualization. #RNAstructure #WebTool #DataVisualization #Bioinformatics @narjournal.bsky.social
academic.oup.com/nar/article/...
August 10, 2025 at 4:49 PM
curious-cynic.bsky.social
Most of the predictions e.g. mfold, RNAfold, etc. allow you to set folding constraints so you can force the structure you wanna see. Otherwise I like the Structure Editor part of RNAstructure rna.urmc.rochester.edu/GUI/html/Str... you can reshape the molecule to your liking & calculate the energy
StructureEditor
rna.urmc.rochester.edu
November 22, 2024 at 8:40 PM
aandrzejewskaa.bsky.social
Could I be added to RNA Biology?
as #RNAstructure and #RNAfunction relationship fan 🫶🙃
November 21, 2024 at 1:34 PM
cambridgerna.bsky.social
🧬 RNA is far more than just a blueprint for proteins! Its shape is crucial to its function. But how do we study RNA's complex structure?
🔍 Find out at the 20th March RNA Club as we dive into groundbreaking techniques that are changing the game in RNA research!
#RNAstructure #RNA
a black and white drawing of a clock that says 11:18
ALT: a black and white drawing of a clock that says 11:18
media.tenor.com
March 11, 2025 at 12:41 PM
evbc.bsky.social
RNA-Puzzles Round V tackles RNA 3D structure prediction with 23 challenging targets from viral and non-viral origins, setting new benchmarks for RNA bioinformatics. 🧬📊
#Bioinformatics #RNAstructure #ComputationalBiology

📄 doi.org/10.1038/s415...
EVBC👤: Tomasz K Wirecki
RNA-Puzzles Round V: blind predictions of 23 RNA structures - Nature Methods
The results of the Fifth RNA-Puzzles contest highlights advances in RNA three-dimensional structure prediction and uncovers new insights into RNA folding and structure.
doi.org
December 3, 2024 at 10:16 AM
martinalexsmith.bsky.social
(2/8) Predicting full 3D #RNAstructure remains extremely hard — even with AI.

Recent benchmarks show deep-learning tools still struggle on novel RNAs (c.f. Bahai et al, 2024, PLoS Comp Bio)

And while AlphaFold 3 can model RNA, its accuracy lags far behind proteins: www.ebi.ac.uk/training/onl...
August 25, 2025 at 3:02 AM
febsopenbio.bsky.social
📣 Don't miss this new Review!

Interplay between RNA-protein interactions and RNA structures in gene regulation

🔓 buff.ly/pu6TpVa

🖊️ @rnaminni.bsky.social

#RBPs #RNA #RNAbiology #RNAbindingproteins #RNAbinding #RNAstructure
September 29, 2025 at 9:01 AM
bianca-pierattini.bsky.social
I am in San Diego attending the #RNA25 annual meeting @rnasociety.bsky.social! Whether you work with #RNAstructure, are curious about ways to study it or have a favourite RNA that you would like to explore come to visit poster number 431 tonight! @miskalab.bsky.social
May 31, 2025 at 12:20 AM
fraor.bsky.social
Today I tested my own method for RNA analysis. This method can serve as an early indicator of RNA stability, even before detailed 3D modeling.

#Bioinformatics #ComputationalBiology #StructuralBiology #MolecularBiology #RNA #Biotechnology #LifeSciences #RNAresearch #RNAstructure #RNAfolding #LLM
September 24, 2025 at 5:22 AM
danbose.bsky.social
This looks useful- will give it a go #RNAstructure
November 22, 2024 at 8:13 AM
mtwolfinger.bsky.social
Calling #RNA & #Virology researchers! 🧬🦠
Submissions are open for the open-access Special Issue '𝗙𝘂𝗻𝗰𝘁𝗶𝗼𝗻𝗮𝗹 𝗥𝗡𝗔𝘀 𝗶𝗻 𝗩𝗶𝗿𝗼𝗹𝗼𝗴𝘆' in MDPI Viruses, which I'm guest editing.
📝 Original research & reviews welcome!
🗓️ Deadline: Feb 28, 2026
michaelwolfinger.com/blog/2025/bl...
#FunctionalRNA #RNAstructure
Functional RNAs in Virology Special Issue
MDPI Viruses has launched a new open-access Special Issue on “Functional RNAs in Virology” to highlight recent advances in understanding how RNAs act as regulatory molecule in viral infection
michaelwolfinger.com
July 30, 2025 at 11:20 AM
mtwolfinger.bsky.social
Did you know? The #ViennaRNA Package can handle a wide range of RNA modifications, including:

#Inosine (I)
#Pseudouridine (P)
#N6-methyladenosine (m6A)
#7-deaza-adenosine (7DA)
#Nebularine (purine)
#Dihydrouridine (D)

#Bioinformatics #ComputationalBiology #RNAStructure #SyntheticBiology
4/n
January 18, 2025 at 9:33 PM
danbose.bsky.social
Super method linking GROseq/DMSMaPseq shedding light on co-transcriptional #RNA folding. Really enjoyed seeing this presented recently. #RNAStructure www.biorxiv.org/content/10.1...
Rapid folding of nascent RNA regulates eukaryotic RNA biogenesis
An RNA′s catalytic, regulatory, or coding potential depends on RNA structure formation. Because base pairing occurs during transcription, early structural states can govern RNA processing events and d...
www.biorxiv.org
November 27, 2024 at 7:15 AM
martinalexsmith.bsky.social
.@AGbioDS from http://RNAfold.ai closing off this session of the @UNSWRNA annual symposium presenting his (and @oncogenie's) company, that leverages #AI to design new therapies targeting #RNAstructure and accessibility.
December 3, 2024 at 5:44 AM
jmbujnicki.bsky.social
🚀 DesiRNA, our new RNA design tool, solved all 100 puzzles in the Eterna100 benchmark within 24 hours, outperforming all existing RNA design programs! 🧬

🔗 Read about it in Nucleic Acids Research: doi.org/10.1093/nar/...

#Science #Bioinformatics #ComputationalBiology #RNA #RNAstructure
DesiRNA: structure-based design of RNA sequences with a replica exchange Monte Carlo approach
Abstract. Designing RNA sequences that form a specific structure remains a challenge. Current computational methods often struggle with the complexity of R
doi.org
February 12, 2025 at 9:36 PM
danbose.bsky.social
Super new work from Chris and the team, including some cool #smFRET showing changes to n #RNAstructure- have a read!
July 20, 2025 at 9:48 AM
aandrzejewskaa.bsky.social
Hi! 😄
1) The function ‘Draw’ in RNAStructure where you can redraw your structure from .ct file. There should be energy over the model.
2) Structure Editor as additional tool to RNAStructure, there you can open .ct file with model and calculate the energy in options.
November 22, 2024 at 9:07 PM
rnaconnect.bsky.social
Missed our recent webinar on New Methods for RNA Modification Detection and Structure Probing?

Explore innovative techniques that are transforming our understanding of #RNAmods and #RNAstructure.

Watch here: bit.ly/3TULhbr

#RNA #RNASky #structuralRNA
New Methods for RNA Modification Detection and Structure Probing
In this webinar, you’ll hear from three experts in the field about their research into the structure, function, regulation and detection of RNA modifications.
bit.ly
February 6, 2025 at 7:28 PM