Zach Marin
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zacsimile.bsky.social
Zach Marin
@zacsimile.bsky.social
hardware x software in microscopy | postdoc in Ries Lab @maxperutzlabs.bsky.social | http://zacsimile.github.io | 🇺🇸 in 🇦🇹 | he/him | views are graphical projections
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July 20, 2025 at 8:12 PM
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July 8, 2025 at 7:40 AM
Thanks! Yep, we do 3D excitation (z scan with a top hat) and 3D modeling of fluorophore positions. See, e.g., example2.
April 10, 2025 at 5:50 AM
These and many other simulations are covered in the paper. Example notebooks for each simulation are provided as part of the code base, and on Google Colab (see github.com/ries-lab/Sim...). We hope the community will find this useful and contribute their own simulated examples using this package.
GitHub - ries-lab/SimuFLUX: A comprehensive simulator for MINFLUX experiments.
A comprehensive simulator for MINFLUX experiments. - ries-lab/SimuFLUX
github.com
April 9, 2025 at 1:26 PM
For single molecule tracking, we optimized laser power, pattern size, photon limit and pattern dwell time to increase the measurable diffusion coefficient by 70% over that captured by the standard Abberior tracking sequence.
April 9, 2025 at 1:26 PM