Weria Pezeshkian
@weria-lab.bsky.social
Assistant Professor
Niels Bohr Institute, University of Copenhagen
Website: commicgroup.ku.dk
Niels Bohr Institute, University of Copenhagen
Website: commicgroup.ku.dk
the Martini Pumpkin by my PhD student Isabell Lindahl.
Too much fat though!
TS2CG, Martini3, Martini
@cg-martini.bsky.social
Too much fat though!
TS2CG, Martini3, Martini
@cg-martini.bsky.social
October 27, 2025 at 2:49 PM
the Martini Pumpkin by my PhD student Isabell Lindahl.
Too much fat though!
TS2CG, Martini3, Martini
@cg-martini.bsky.social
Too much fat though!
TS2CG, Martini3, Martini
@cg-martini.bsky.social
A new preprint from my group by my PhD student Adria:
No attraction between proteins, they do not induce curvature, but they cluster on membranes.
One of the reasons why mesoscale modeling matters.
www.biorxiv.org/content/10.1...
No attraction between proteins, they do not induce curvature, but they cluster on membranes.
One of the reasons why mesoscale modeling matters.
www.biorxiv.org/content/10.1...
September 18, 2025 at 8:21 AM
A new preprint from my group by my PhD student Adria:
No attraction between proteins, they do not induce curvature, but they cluster on membranes.
One of the reasons why mesoscale modeling matters.
www.biorxiv.org/content/10.1...
No attraction between proteins, they do not induce curvature, but they cluster on membranes.
One of the reasons why mesoscale modeling matters.
www.biorxiv.org/content/10.1...
New collaborative preprint, Helfrich Monte Carlo Flexible Fitting: physics-based, data-driven cell-scale simulations. By Valentin J. Maurer, Marc Siggel, Jan Kosinski, Julia Mahamid
www.biorxiv.org/content/10.1...
www.biorxiv.org/content/10.1...
May 29, 2025 at 11:41 AM
New collaborative preprint, Helfrich Monte Carlo Flexible Fitting: physics-based, data-driven cell-scale simulations. By Valentin J. Maurer, Marc Siggel, Jan Kosinski, Julia Mahamid
www.biorxiv.org/content/10.1...
www.biorxiv.org/content/10.1...
New preprint: TS2CG version 2, building and simulating membranes with any shape and lateral organisation. We got Martini Globe, Martini Möbius strip and again mitochondrion.
www.biorxiv.org/content/10.1...
@cg-martini.bsky.social @janstevens.bsky.social @fabianschuhmann.bsky.social
www.biorxiv.org/content/10.1...
@cg-martini.bsky.social @janstevens.bsky.social @fabianschuhmann.bsky.social
April 17, 2025 at 5:57 PM
New preprint: TS2CG version 2, building and simulating membranes with any shape and lateral organisation. We got Martini Globe, Martini Möbius strip and again mitochondrion.
www.biorxiv.org/content/10.1...
@cg-martini.bsky.social @janstevens.bsky.social @fabianschuhmann.bsky.social
www.biorxiv.org/content/10.1...
@cg-martini.bsky.social @janstevens.bsky.social @fabianschuhmann.bsky.social
The final short talk by Adria Bravo Vidal my PhD student,
On the sampling of simulations of membrane shape
On the sampling of simulations of membrane shape
December 10, 2024 at 12:49 PM
The final short talk by Adria Bravo Vidal my PhD student,
On the sampling of simulations of membrane shape
On the sampling of simulations of membrane shape
Now active system. Dr Dmitry Fedosov (Forschungszentrum Jülich GmbH Wilhelm Johnen StraßeStraße, Jülich Germany) is talking about:
Simulations of active vesicles
Simulations of active vesicles
December 10, 2024 at 12:07 PM
Now active system. Dr Dmitry Fedosov (Forschungszentrum Jülich GmbH Wilhelm Johnen StraßeStraße, Jülich Germany) is talking about:
Simulations of active vesicles
Simulations of active vesicles
Short talk by Tatiana Morozova, CNRS/Institut Pasteur,
Role of the sequnce length in the coil-to-globule transition of elastin-like polypeptides
Role of the sequnce length in the coil-to-globule transition of elastin-like polypeptides
December 10, 2024 at 8:53 AM
Short talk by Tatiana Morozova, CNRS/Institut Pasteur,
Role of the sequnce length in the coil-to-globule transition of elastin-like polypeptides
Role of the sequnce length in the coil-to-globule transition of elastin-like polypeptides
And the final talk (short talk) by Leonhard Starke (Aarhus University)
Pore formation in complex biological membranes
Pore formation in complex biological membranes
December 9, 2024 at 3:57 PM
And the final talk (short talk) by Leonhard Starke (Aarhus University)
Pore formation in complex biological membranes
Pore formation in complex biological membranes
Ali Asghar Hakami Zanjani from University of Southern Denmark.
Advanced Sampling Methodology for Investigating Early-Stage Amyloid Aggregation Structures.
Advanced Sampling Methodology for Investigating Early-Stage Amyloid Aggregation Structures.
December 9, 2024 at 3:45 PM
Ali Asghar Hakami Zanjani from University of Southern Denmark.
Advanced Sampling Methodology for Investigating Early-Stage Amyloid Aggregation Structures.
Advanced Sampling Methodology for Investigating Early-Stage Amyloid Aggregation Structures.
After a small break enforced by the projector, Lorena Zuzic from Aarhus University is talking about PINning down the elevator-type mechanism of auxin transport
December 9, 2024 at 3:26 PM
After a small break enforced by the projector, Lorena Zuzic from Aarhus University is talking about PINning down the elevator-type mechanism of auxin transport
(Short talk) Dimitrios Kolokouris from University of Copenhagen, is talking about
Investigating the role of cholesterol in regulating the SLC7 family of amino acid transporters
Investigating the role of cholesterol in regulating the SLC7 family of amino acid transporters
December 9, 2024 at 3:04 PM
(Short talk) Dimitrios Kolokouris from University of Copenhagen, is talking about
Investigating the role of cholesterol in regulating the SLC7 family of amino acid transporters
Investigating the role of cholesterol in regulating the SLC7 family of amino acid transporters
Now we have a 4 short talks. First, Fabian Schuhmann from my group is talking about
An integrative MD model reveals protein complexes and protein distribution in mitochondria
An integrative MD model reveals protein complexes and protein distribution in mitochondria
December 9, 2024 at 2:51 PM
Now we have a 4 short talks. First, Fabian Schuhmann from my group is talking about
An integrative MD model reveals protein complexes and protein distribution in mitochondria
An integrative MD model reveals protein complexes and protein distribution in mitochondria
Now Prof. Siewert Jan Marrink from University of Groningen Groningen, The Netherlands.
Simulating entire cells with Martini
Simulating entire cells with Martini
December 9, 2024 at 12:03 PM
Now Prof. Siewert Jan Marrink from University of Groningen Groningen, The Netherlands.
Simulating entire cells with Martini
Simulating entire cells with Martini
and finally the first workshop by Prof. Kresten Lindorff-Larsen from University of Copenhagen.
Combining experiments and simulations: theory and practical examples for disordered proteins
December 9, 2024 at 9:54 AM
and finally the first workshop by Prof. Kresten Lindorff-Larsen from University of Copenhagen.
Combining experiments and simulations: theory and practical examples for disordered proteins
First short talk by Eva Smorodina from University of Oslo.
Structural modeling of antibody variant epitope specificity with complementary experimental and computational techniques.
Structural modeling of antibody variant epitope specificity with complementary experimental and computational techniques.
December 9, 2024 at 8:56 AM
First short talk by Eva Smorodina from University of Oslo.
Structural modeling of antibody variant epitope specificity with complementary experimental and computational techniques.
Structural modeling of antibody variant epitope specificity with complementary experimental and computational techniques.
First talk by Prof. Franca Fraternali from University College London. Uncovering antibody sequences and structures, their assembly and their conformational flexibility!
December 9, 2024 at 8:17 AM
First talk by Prof. Franca Fraternali from University College London. Uncovering antibody sequences and structures, their assembly and their conformational flexibility!
"Advances in Molecular Modeling, Copenhagen 2024"
Group members getting ready to welcome the participants
Group members getting ready to welcome the participants
December 9, 2024 at 7:12 AM
"Advances in Molecular Modeling, Copenhagen 2024"
Group members getting ready to welcome the participants
Group members getting ready to welcome the participants