Vandepoele lab
@vandepoelelab.bsky.social
Vandepoele lab @ VIB-UGent Center for Plant Systems Biology | www.vandepoelelab.be | ERC Adv multiCODE
More info: www.biomedcentral.com/collections/...
August 13, 2025 at 7:06 AM
More info: www.biomedcentral.com/collections/...
Reposted by Vandepoele lab
Unlocking gene regulatory networks for crop resilience and sustainable agriculture
Our new review is now online @natbiotech.nature.com
w/ Richalynn, Xin, Bob, Toshi, & Jorge
A full-text view-only is accessible via rdcu.be/euscD
www.nature.com/articles/s41...
Our new review is now online @natbiotech.nature.com
w/ Richalynn, Xin, Bob, Toshi, & Jorge
A full-text view-only is accessible via rdcu.be/euscD
www.nature.com/articles/s41...
Unlocking gene regulatory networks for crop resilience and sustainable agriculture
Nature Biotechnology - Gene regulatory networks are crucial for understanding complex gene regulation in plants and could advance crop improvement for more sustainable and climate-resilient...
rdcu.be
July 2, 2025 at 12:23 PM
Unlocking gene regulatory networks for crop resilience and sustainable agriculture
Our new review is now online @natbiotech.nature.com
w/ Richalynn, Xin, Bob, Toshi, & Jorge
A full-text view-only is accessible via rdcu.be/euscD
www.nature.com/articles/s41...
Our new review is now online @natbiotech.nature.com
w/ Richalynn, Xin, Bob, Toshi, & Jorge
A full-text view-only is accessible via rdcu.be/euscD
www.nature.com/articles/s41...
Excited to share that two team members, Jasper Staut and @svitlanalukicheva.bsky.social , will present their research on single-cell regulatory networks and gene prioritization at the upcoming GRC conference on Single-Cell approaches in plant biology!
The last day for applications is July 13th!
To Apply to the GRC: lnkd.in/gvkMxuKR
Meet The Speakers of the Single-Cell Approaches in Plant Biology GRC Conference!
To Learn More About Dr. Dinneny's Research: dinnenylab.me
@josedinneny.bsky.social
To Apply to the GRC: lnkd.in/gvkMxuKR
Meet The Speakers of the Single-Cell Approaches in Plant Biology GRC Conference!
To Learn More About Dr. Dinneny's Research: dinnenylab.me
@josedinneny.bsky.social
August 1, 2025 at 8:17 AM
Excited to share that two team members, Jasper Staut and @svitlanalukicheva.bsky.social , will present their research on single-cell regulatory networks and gene prioritization at the upcoming GRC conference on Single-Cell approaches in plant biology!
Reposted by Vandepoele lab
We are hiring! If you have experience in plant genomics + AI, or promoter engineering + synthetic biology, check out our two open postdoc positions (computational + wetlab): www.vandepoelelab.be/Jobs please re-share RT #ERC
Jobs | Vandepoele Lab
www.vandepoelelab.be
July 16, 2025 at 8:45 PM
We are hiring! If you have experience in plant genomics + AI, or promoter engineering + synthetic biology, check out our two open postdoc positions (computational + wetlab): www.vandepoelelab.be/Jobs please re-share RT #ERC
We are hiring! If you have experience in plant genomics + AI, or promoter engineering + synthetic biology, check out our two open postdoc positions (computational + wetlab): www.vandepoelelab.be/Jobs please re-share RT #ERC
Jobs | Vandepoele Lab
www.vandepoelelab.be
July 16, 2025 at 8:45 PM
We are hiring! If you have experience in plant genomics + AI, or promoter engineering + synthetic biology, check out our two open postdoc positions (computational + wetlab): www.vandepoelelab.be/Jobs please re-share RT #ERC
The origin of the #MLD8 logo explained. We welcome >200 participants (from 26 countries) in the wonderful Bijloke concert hall for an update on diatom biology.
June 23, 2025 at 8:20 AM
The origin of the #MLD8 logo explained. We welcome >200 participants (from 26 countries) in the wonderful Bijloke concert hall for an update on diatom biology.
All set for a week of diatom biology. Expect fascinating talks from diverse research disciplines, as well as sun and high temperatures.
Don't miss "Molecular Life of Diatoms 8" - registration deadline is June 6th. We will have a diverse set of speakers (keynotes + 49! contributed talks) and >120 posters. Incl. the stunning scenery of Ghent www.vibconferences.be/events/molec...
June 21, 2025 at 9:34 AM
All set for a week of diatom biology. Expect fascinating talks from diverse research disciplines, as well as sun and high temperatures.
Interested in applying AI to study gene regulation in plants? Two postdoc positions will open soon (wetlab + computational), so keep an eye on www.vandepoelelab.be #ICAR2025 #ERC
June 19, 2025 at 1:27 PM
Interested in applying AI to study gene regulation in plants? Two postdoc positions will open soon (wetlab + computational), so keep an eye on www.vandepoelelab.be #ICAR2025 #ERC
Thu 19 June (Arabidopsis Informatics workshop), Dajo Smet will present our latest results on the application of explainable AI methods to unravel the regulatory code controlling gene expression #icar2025
June 16, 2025 at 7:12 PM
Thu 19 June (Arabidopsis Informatics workshop), Dajo Smet will present our latest results on the application of explainable AI methods to unravel the regulatory code controlling gene expression #icar2025
Don't miss "Molecular Life of Diatoms 8" - registration deadline is June 6th. We will have a diverse set of speakers (keynotes + 49! contributed talks) and >120 posters. Incl. the stunning scenery of Ghent www.vibconferences.be/events/molec...
May 29, 2025 at 5:54 PM
Don't miss "Molecular Life of Diatoms 8" - registration deadline is June 6th. We will have a diverse set of speakers (keynotes + 49! contributed talks) and >120 posters. Incl. the stunning scenery of Ghent www.vibconferences.be/events/molec...
Reposted by Vandepoele lab
The premier conference on Machine Learning for Computational Biology is Sep 9-10 at the NY Genome Center in NYC!
Submission deadline is June 1 for 2-page abstracts and 8-page papers (eligible for proceedings track).
Registration is now open! (Link below)
Please retweet!
Submission deadline is June 1 for 2-page abstracts and 8-page papers (eligible for proceedings track).
Registration is now open! (Link below)
Please retweet!
May 16, 2025 at 11:26 AM
The premier conference on Machine Learning for Computational Biology is Sep 9-10 at the NY Genome Center in NYC!
Submission deadline is June 1 for 2-page abstracts and 8-page papers (eligible for proceedings track).
Registration is now open! (Link below)
Please retweet!
Submission deadline is June 1 for 2-page abstracts and 8-page papers (eligible for proceedings track).
Registration is now open! (Link below)
Please retweet!
#ourlatest Mapping of functional cis-regulatory elements in the maize genome, incl. the role of specific TE families in controlling gene expression. Combining our iCREs with region-based TFBS enrichment (in MINI-AC) enhances GRN inference! 1/2
A map of integrated cis-regulatory elements enhances gene regulatory analysis in maize #resource #PlantCommunications cell.com/plant-commun...
May 15, 2025 at 12:40 PM
#ourlatest Mapping of functional cis-regulatory elements in the maize genome, incl. the role of specific TE families in controlling gene expression. Combining our iCREs with region-based TFBS enrichment (in MINI-AC) enhances GRN inference! 1/2
Early bird registration deadline for "Molecular Life of Diatoms 8" is May 9th. We will have an exciting mix of keynote speakers and 45+ contributed talks! More info: www.vibconferences.be/events/molec...
May 5, 2025 at 8:40 PM
Early bird registration deadline for "Molecular Life of Diatoms 8" is May 9th. We will have an exciting mix of keynote speakers and 45+ contributed talks! More info: www.vibconferences.be/events/molec...
The abstract submission deadline for the 8th edition of the Molecular Life of Diatoms conference has been extended: the new deadline is 27th of April 2025. Don’t miss a chance to present your breakthrough research! www.vibconferences.be/events/molec...
April 22, 2025 at 9:21 AM
The abstract submission deadline for the 8th edition of the Molecular Life of Diatoms conference has been extended: the new deadline is 27th of April 2025. Don’t miss a chance to present your breakthrough research! www.vibconferences.be/events/molec...
April 22, 2025 at 9:20 AM
The abstract submission deadline for the 8th edition of the Molecular Life of Diatoms conference has been extended: the new deadline is 27th of April 2025. Don’t miss a chance to present your breakthrough research! www.vibconferences.be/events/molec...
#diatoms #genomics #resources DiatOmicBase: a versatile gene-centered platform for mining functional omics data in diatom research @theplantjournal.bsky.social onlinelibrary.wiley.com/doi/10.1111/... joint work with @afalciat.bsky.social
DiatOmicBase: a versatile gene‐centered platform for mining functional omics data in diatom research
In recent years, diatoms have become the subject of increasing interest because of their ecological importance and their biotechnological potential for natural products such as pigments and polyunsat...
onlinelibrary.wiley.com
March 17, 2025 at 9:02 AM
#diatoms #genomics #resources DiatOmicBase: a versatile gene-centered platform for mining functional omics data in diatom research @theplantjournal.bsky.social onlinelibrary.wiley.com/doi/10.1111/... joint work with @afalciat.bsky.social
Reposted by Vandepoele lab
🌊🔬 The 8th International Diatom Meeting is coming to Ghent! Join top researchers & young scientists at #MLD8 to explore diatom biology, ecology & biotech potential. Network, share ideas & enjoy Belgium’s rich gastronomy. Don’t miss it!
Find out more: vibbio.tech/40Gz1Of
#Microalgae #DiatomResearch
Find out more: vibbio.tech/40Gz1Of
#Microalgae #DiatomResearch
February 3, 2025 at 1:46 PM
🌊🔬 The 8th International Diatom Meeting is coming to Ghent! Join top researchers & young scientists at #MLD8 to explore diatom biology, ecology & biotech potential. Network, share ideas & enjoy Belgium’s rich gastronomy. Don’t miss it!
Find out more: vibbio.tech/40Gz1Of
#Microalgae #DiatomResearch
Find out more: vibbio.tech/40Gz1Of
#Microalgae #DiatomResearch
Reposted by Vandepoele lab
A single-cell and spatial wheat root atlas with cross-species annotations delineates conserved tissue-specific marker genes and regulators: Cell Reports www.cell.com/cell-reports...
A single-cell and spatial wheat root atlas with cross-species annotations delineates conserved tissue-specific marker genes and regulators
Accurate scRNA-sequencing cluster annotation in less-studied plant species remains
a major challenge due to the lack of validated marker genes. Ke et al. provide an
orthology-based annotation pipeline...
www.cell.com
February 2, 2025 at 9:23 AM
A single-cell and spatial wheat root atlas with cross-species annotations delineates conserved tissue-specific marker genes and regulators: Cell Reports www.cell.com/cell-reports...
Reposted by Vandepoele lab
We want to make JASPAR even better for our users!
Please share your experience and ideas to help us enhance the database by taking a quick survey at nettskjema.no/a/467839.
Your insights make a difference! Thank you so much for your participation.
Please share your experience and ideas to help us enhance the database by taking a quick survey at nettskjema.no/a/467839.
Your insights make a difference! Thank you so much for your participation.
December 4, 2024 at 3:54 PM
We want to make JASPAR even better for our users!
Please share your experience and ideas to help us enhance the database by taking a quick survey at nettskjema.no/a/467839.
Your insights make a difference! Thank you so much for your participation.
Please share your experience and ideas to help us enhance the database by taking a quick survey at nettskjema.no/a/467839.
Your insights make a difference! Thank you so much for your participation.
Genome Biology is calling for submissions to our Collection on Regulatory elements in plants.
Guest Editors:
- Pil Joon Seo, PhD, Seoul National University, South Korea
- Klaas Vandepoele, PhD, Ghent University, Belgium
More info: www.biomedcentral.com/collections/...
please RT
Guest Editors:
- Pil Joon Seo, PhD, Seoul National University, South Korea
- Klaas Vandepoele, PhD, Ghent University, Belgium
More info: www.biomedcentral.com/collections/...
please RT
Call for papers - Regulatory elements in plants
www.biomedcentral.com
December 3, 2024 at 11:41 AM
Genome Biology is calling for submissions to our Collection on Regulatory elements in plants.
Guest Editors:
- Pil Joon Seo, PhD, Seoul National University, South Korea
- Klaas Vandepoele, PhD, Ghent University, Belgium
More info: www.biomedcentral.com/collections/...
please RT
Guest Editors:
- Pil Joon Seo, PhD, Seoul National University, South Korea
- Klaas Vandepoele, PhD, Ghent University, Belgium
More info: www.biomedcentral.com/collections/...
please RT
Reposted by Vandepoele lab
The workshop "PLant science in the ANThropocene" (March 24th to April 4th 2025 at University Paris-Saclay) will address key challenges from basic sciences to socio-economic and environmental aspects. Applications are open
eng-saclay-plant-sciences.hub.inrae.fr/events/works...
eng-saclay-plant-sciences.hub.inrae.fr/events/works...
November 7, 2024 at 7:26 AM
The workshop "PLant science in the ANThropocene" (March 24th to April 4th 2025 at University Paris-Saclay) will address key challenges from basic sciences to socio-economic and environmental aspects. Applications are open
eng-saclay-plant-sciences.hub.inrae.fr/events/works...
eng-saclay-plant-sciences.hub.inrae.fr/events/works...
#ourlatest Application of orthology and network biology to infer gene functions in non-model plants. Vandepoele K, Thierens S, Van Bel M. Physiol Plant. 2024 Jul-Aug;176(4):e14441. doi.org/10.1111/ppl.... #Review
Northern light reviews – Application of orthology and network biology to infer gene functions in non‐model plants
Approximately 60% of the genes and gene products in the model species Arabidopsis thaliana have been functionally characterized. In non-model plant species, the functional annotation of the gene spac...
doi.org
November 20, 2024 at 9:22 PM
#ourlatest Application of orthology and network biology to infer gene functions in non-model plants. Vandepoele K, Thierens S, Van Bel M. Physiol Plant. 2024 Jul-Aug;176(4):e14441. doi.org/10.1111/ppl.... #Review
Great start of the new VIB.AI center at the #VIBAIsymposium Looking forward to collaborate on exciting new research projects #AI #synthetic
Fantastic start of the #VIBAIsymposium this morning with a welcome by our scientific director @steinaerts.bsky.social and talks by Julien Gagneur and @avsecz.bsky.social
November 20, 2024 at 8:05 PM
Great start of the new VIB.AI center at the #VIBAIsymposium Looking forward to collaborate on exciting new research projects #AI #synthetic