Utz Ermel
@uermel.bsky.social
Scientist at bi[o]hub, Redwood City, CA
I like to make open source cryoET things.
I like to make open source cryoET things.
Works with local OME-Zarr files, or as a bonus: stream sub-tilt stacks directly from the cryoET Data Portal: cryoetdataportal.czscience.com
Massive thanks to @danielji.bsky.social who did the heavy lifting implementing this over the summer! 🙌
Massive thanks to @danielji.bsky.social who did the heavy lifting implementing this over the summer! 🙌
CryoET Data Portal
cryoetdataportal.czscience.com
November 17, 2025 at 10:30 PM
Works with local OME-Zarr files, or as a bonus: stream sub-tilt stacks directly from the cryoET Data Portal: cryoetdataportal.czscience.com
Massive thanks to @danielji.bsky.social who did the heavy lifting implementing this over the summer! 🙌
Massive thanks to @danielji.bsky.social who did the heavy lifting implementing this over the summer! 🙌
The kaggle competition may be over, but we remain excited to see solutions from #TeamTomo!
If you're interested in checking whether your algorithm beats the kaggle winners' please don’t hesitate to give it a go and make a submission to the data portal!
If you're interested in checking whether your algorithm beats the kaggle winners' please don’t hesitate to give it a go and make a submission to the data portal!
March 6, 2025 at 5:14 PM
The kaggle competition may be over, but we remain excited to see solutions from #TeamTomo!
If you're interested in checking whether your algorithm beats the kaggle winners' please don’t hesitate to give it a go and make a submission to the data portal!
If you're interested in checking whether your algorithm beats the kaggle winners' please don’t hesitate to give it a go and make a submission to the data portal!
Now that the competition is closed, we're releasing all 492 runs, including raw data, tomograms and ground truth annotations as a benchmark dataset for the community. Find the datasets here: cryoetdataportal.czscience.com/depositions/...
March 6, 2025 at 5:14 PM
Now that the competition is closed, we're releasing all 492 runs, including raw data, tomograms and ground truth annotations as a benchmark dataset for the community. Find the datasets here: cryoetdataportal.czscience.com/depositions/...
Exciting news! Are you planning to eventually release these beautiful segmentations as well?
February 28, 2025 at 9:26 PM
Exciting news! Are you planning to eventually release these beautiful segmentations as well?