Tomas Bruna
@tomasbruna.bsky.social
Genome Data Scientist @ DOE Joint Genome Institute
Reposted by Tomas Bruna
This article is now published! academic.oup.com/nargab/artic...
We’ve added a few new analyses. First off, we show that, while gene presence absence variation (PAV) scales with evolutionary distance in both plants and animals, the base level and rate of accrual are both twice as high in plants.
We’ve added a few new analyses. First off, we show that, while gene presence absence variation (PAV) scales with evolutionary distance in both plants and animals, the base level and rate of accrual are both twice as high in plants.
January 30, 2026 at 12:41 PM
This article is now published! academic.oup.com/nargab/artic...
We’ve added a few new analyses. First off, we show that, while gene presence absence variation (PAV) scales with evolutionary distance in both plants and animals, the base level and rate of accrual are both twice as high in plants.
We’ve added a few new analyses. First off, we show that, while gene presence absence variation (PAV) scales with evolutionary distance in both plants and animals, the base level and rate of accrual are both twice as high in plants.
Reposted by Tomas Bruna
With help of international colleagues at @jgi.doe.gov, @oregonstate.edu, and @stockholm-uni.bsky.social, we are relasing new parameters for Tiberius. Thx to Lars Gabriel, @tomasbruna.bsky.social, Samuel Talbot, @chriswheat.bsky.social, @masta.bsky.social - and many others. github.com/Gaius-August...
Release v1.1.7 · Gaius-Augustus/Tiberius
⚠️ New Models available:
Diatoms
Eudicotyledons
Lepidoptera
Monocotyledonae
Mucoromycota
Saccharomycota
Sordariomycota
Several bugfixes.
github.com
October 24, 2025 at 6:37 PM
With help of international colleagues at @jgi.doe.gov, @oregonstate.edu, and @stockholm-uni.bsky.social, we are relasing new parameters for Tiberius. Thx to Lars Gabriel, @tomasbruna.bsky.social, Samuel Talbot, @chriswheat.bsky.social, @masta.bsky.social - and many others. github.com/Gaius-August...
Big thanks to @axelvisel.bsky.social for sharing! For full consideration, please apply by September 2.
Postdoc opportunity with @tomasbruna.bsky.social here at @jgi.doe.gov @berkeleylab.lbl.gov:
Develop, benchmark, and apply Plant Genomic Language Models (gLMs) 🌿🧬💻
jobs.lbl.gov/jobs/computa...
#AI #PlantGenomics #gLMs #Postdoc
Develop, benchmark, and apply Plant Genomic Language Models (gLMs) 🌿🧬💻
jobs.lbl.gov/jobs/computa...
#AI #PlantGenomics #gLMs #Postdoc
August 21, 2025 at 12:13 AM
Big thanks to @axelvisel.bsky.social for sharing! For full consideration, please apply by September 2.
Reposted by Tomas Bruna
Determining presence-absence variation (PAV) across reference genomes is a major goal of pangenome analysis. It turns out that A LOT of gene PAV is due to methodological artifacts.
We explore the causes of this in soybean and cotton datasets in our recent preprint: www.biorxiv.org/content/10.1...
We explore the causes of this in soybean and cotton datasets in our recent preprint: www.biorxiv.org/content/10.1...
August 18, 2025 at 4:51 PM
Determining presence-absence variation (PAV) across reference genomes is a major goal of pangenome analysis. It turns out that A LOT of gene PAV is due to methodological artifacts.
We explore the causes of this in soybean and cotton datasets in our recent preprint: www.biorxiv.org/content/10.1...
We explore the causes of this in soybean and cotton datasets in our recent preprint: www.biorxiv.org/content/10.1...