Tatsuya Tsukui
tatsuyatsukui.bsky.social
Tatsuya Tsukui
@tatsuyatsukui.bsky.social
Assistant Professor at UCSF. Studying Pulmonary fibrosis | Fibroblast | Tissue injury and remodeling | Immunology
We also highlighted some recent findings regarding stromal cells induced in injury and diseases. This is a rapidly developing area, and we are expecting to find more diverse biology of stromal cells in various contexts in the coming years.
May 27, 2025 at 5:52 PM
We re-annotated our previous human and mouse scRNA-seq data and picked up a few specific markers for each stromal subset. You can find more genes in the text and cited references. We also deposited re-annotated Seurat objects to Zenodo zenodo.org/records/1533...
May 27, 2025 at 5:52 PM
Despite the different annotation strategies used by different groups, the structure of scRNA-seq data is often conserved across studies. In addition, each subset is often characterized by distinct localizations. We carefully compared datasets and reviewed evidence of locations
May 27, 2025 at 5:52 PM
You did scRNA-seq of the lung, but can't decide on stromal annotation? Or trying to pick up Xenium probes? We got you! We wrote a review of stromal heterogeneity in the adult lung delineated by recent single-cell genomics studies. journals.physiology.org/doi/full/10....
May 27, 2025 at 5:52 PM
Wild flowers are thriving at Mori point, CA
April 21, 2025 at 3:12 AM