Philippe Vandenkoornhuyse
@symbioticworld1.bsky.social
Full Professor @ Université de Rennes (France)
Eco-evolution, plant microbiota, symbiosis evolution, holobiont, next agriculture
Eco-evolution, plant microbiota, symbiosis evolution, holobiont, next agriculture
Nice work, strong consequences !
Pesticide residues alter taxonomic and functional biodiversity in soils
www.nature.com/articles/s41...
Pesticide residues alter taxonomic and functional biodiversity in soils
www.nature.com/articles/s41...
Pesticide residues alter taxonomic and functional biodiversity in soils - Nature
A wide survey of pesticide effects on soil biodiversity across 373 sites in Europe reveals that pesticide residues occur in 70% of sites and have major effects on soil biodiversity and functional...
www.nature.com
January 29, 2026 at 8:24 AM
Nice work, strong consequences !
Pesticide residues alter taxonomic and functional biodiversity in soils
www.nature.com/articles/s41...
Pesticide residues alter taxonomic and functional biodiversity in soils
www.nature.com/articles/s41...
Multispecies grasslands produce more yield from lower nitrogen inputs across a climatic gradient | Science www.science.org/doi/10.1126/...
Multispecies grasslands produce more yield from lower nitrogen inputs across a climatic gradient
High-yielding forage grasslands frequently contain low species diversity and receive high inputs of nitrogen fertilizer. To investigate multispecies mixtures as an alternative strategy, the 26-site in...
www.science.org
January 29, 2026 at 8:22 AM
Multispecies grasslands produce more yield from lower nitrogen inputs across a climatic gradient | Science www.science.org/doi/10.1126/...
Our new published paper within the conceptual framework of Holobiont ...
Differential ‘resuscitation’ from the seed microbiota: a plant‐holobiont ecological strategy for buffering stresses -
Xu - New Phytologist - Wiley Online Library nph.onlinelibrary.wiley.com/doi/10.1111/...
Differential ‘resuscitation’ from the seed microbiota: a plant‐holobiont ecological strategy for buffering stresses -
Xu - New Phytologist - Wiley Online Library nph.onlinelibrary.wiley.com/doi/10.1111/...
Differential ‘resuscitation’ from the seed microbiota: a plant‐holobiont ecological strategy for buffering stresses
The plant and its associated microbiota constitute a holobiont. Within this framework, the seed endophyte reservoir, shaped through multigenerational selection, exhibits pronounced host specificity,.....
nph.onlinelibrary.wiley.com
January 22, 2026 at 12:58 PM
Our new published paper within the conceptual framework of Holobiont ...
Differential ‘resuscitation’ from the seed microbiota: a plant‐holobiont ecological strategy for buffering stresses -
Xu - New Phytologist - Wiley Online Library nph.onlinelibrary.wiley.com/doi/10.1111/...
Differential ‘resuscitation’ from the seed microbiota: a plant‐holobiont ecological strategy for buffering stresses -
Xu - New Phytologist - Wiley Online Library nph.onlinelibrary.wiley.com/doi/10.1111/...
Beyond Plant Diversity: Plant Productivity Responses to Extreme Drought Are Linked to Arbuscular Mycorrhizal Fungal Diversity
In Global Change Biology
doi.org/10.1111/gcb....
In Global Change Biology
doi.org/10.1111/gcb....
onlinelibrary.wiley.com
January 14, 2026 at 11:08 AM
Beyond Plant Diversity: Plant Productivity Responses to Extreme Drought Are Linked to Arbuscular Mycorrhizal Fungal Diversity
In Global Change Biology
doi.org/10.1111/gcb....
In Global Change Biology
doi.org/10.1111/gcb....
In J Adv Res
The genotypically conserved core microbiota modulates nutrient turnover in soybean rhizosphere
www.sciencedirect.com/science/arti...
The genotypically conserved core microbiota modulates nutrient turnover in soybean rhizosphere
www.sciencedirect.com/science/arti...
The genotypically conserved core microbiota modulates nutrient turnover in soybean rhizosphere
Microbiota-mediated nutrient turnover in the rhizosphere determines nutrient bioavailability, thereby enhancing nutrient uptake, utilization, and ulti…
www.sciencedirect.com
January 2, 2026 at 5:39 PM
In J Adv Res
The genotypically conserved core microbiota modulates nutrient turnover in soybean rhizosphere
www.sciencedirect.com/science/arti...
The genotypically conserved core microbiota modulates nutrient turnover in soybean rhizosphere
www.sciencedirect.com/science/arti...
Multiple Sustainable Practices Are Crucial for Enhancing the Provisioning of Agroecosystem Services Worldwide - Medrano - 2025 - Ecology Letters - Wiley Online Library onlinelibrary.wiley.com/doi/10.1111/...
onlinelibrary.wiley.com
January 2, 2026 at 5:17 PM
Multiple Sustainable Practices Are Crucial for Enhancing the Provisioning of Agroecosystem Services Worldwide - Medrano - 2025 - Ecology Letters - Wiley Online Library onlinelibrary.wiley.com/doi/10.1111/...
OmicShare tools: A zero‐code interactive online platform for biological data analysis and visualization - Mu - 2024 - iMeta - Wiley Online Library onlinelibrary.wiley.com/doi/10.1002/...
OmicShare tools: A zero‐code interactive online platform for biological data analysis and visualization
The OmicShare tools platform is a user-friendly online resource for data analysis and visualization, encompassing 161 bioinformatic tools. Users can easily track the progress of projects in real-time...
onlinelibrary.wiley.com
December 25, 2025 at 6:29 PM
OmicShare tools: A zero‐code interactive online platform for biological data analysis and visualization - Mu - 2024 - iMeta - Wiley Online Library onlinelibrary.wiley.com/doi/10.1002/...
Cultivar‐specific preference of bacterial communities and host immune receptor kinase modulate the outcomes of rice–microbiota interactions - Xu - iMeta - Wiley Online Library onlinelibrary.wiley.com/doi/10.1002/...
Cultivar‐specific preference of bacterial communities and host immune receptor kinase modulate the outcomes of rice–microbiota interactions
This study employed a tailored gnotobiotic cultivation system to investigate rice–microbiota interactions from both microbial and host perspectives. We found that the same bacterial inocula, includin...
onlinelibrary.wiley.com
December 25, 2025 at 6:15 PM
Cultivar‐specific preference of bacterial communities and host immune receptor kinase modulate the outcomes of rice–microbiota interactions - Xu - iMeta - Wiley Online Library onlinelibrary.wiley.com/doi/10.1002/...
The tomato seed microbiome is mainly shaped by host genotype and production site
journals.asm.org/doi/10.1128/...
journals.asm.org/doi/10.1128/...
The tomato seed microbiome is mainly shaped by host genotype and production site | mSystems
Seeds not only carry the plant's genetic material but also host distinct microbial
communities that can influence early plant growth and performance. In a large-scale
study involving 100 tomato genoty...
journals.asm.org
December 25, 2025 at 5:56 PM
The tomato seed microbiome is mainly shaped by host genotype and production site
journals.asm.org/doi/10.1128/...
journals.asm.org/doi/10.1128/...
Multispecies grasslands produce more yield from lower nitrogen inputs across a climatic gradient | Science www.science.org/doi/10.1126/...
Multispecies grasslands produce more yield from lower nitrogen inputs across a climatic gradient
High-yielding forage grasslands frequently comprise low species diversity and receive high inputs of nitrogen fertilizer. To investigate multispecies mixtures as an alternative strategy, the 26-site i...
www.science.org
December 25, 2025 at 5:00 PM
Multispecies grasslands produce more yield from lower nitrogen inputs across a climatic gradient | Science www.science.org/doi/10.1126/...
The paper 'Drought-induced plant microbiome and metab...' shows that drought stress promotes specific microbial and metabolite enrichments in the wheat rhizosphere. These changes enhance plant drought resistance via plant-microbes interactions and have lasting legacy effects
doi.org/10.1016/j.ch...
doi.org/10.1016/j.ch...
Redirecting
doi.org
November 27, 2025 at 8:05 AM
The paper 'Drought-induced plant microbiome and metab...' shows that drought stress promotes specific microbial and metabolite enrichments in the wheat rhizosphere. These changes enhance plant drought resistance via plant-microbes interactions and have lasting legacy effects
doi.org/10.1016/j.ch...
doi.org/10.1016/j.ch...
Nice paper in Nature Ecology & Evolution
showing that within the plant microbiota, cross-feeding metabolites within the native community emerged as crucial predictors of community resistance, disproportionally favouring native species over invaders
www.nature.com/articles/s41...
showing that within the plant microbiota, cross-feeding metabolites within the native community emerged as crucial predictors of community resistance, disproportionally favouring native species over invaders
www.nature.com/articles/s41...
Substrate utilization and cross-feeding synergistically determine microbiome resistance to pathogen invasion - Nature Ecology & Evolution
Combining genome-scale metabolic modelling with in vitro and in planta experiments, the authors show that cross-feeding metabolites and substrate utilization synergistically determine microbial commun...
www.nature.com
November 24, 2025 at 2:10 PM
Nice paper in Nature Ecology & Evolution
showing that within the plant microbiota, cross-feeding metabolites within the native community emerged as crucial predictors of community resistance, disproportionally favouring native species over invaders
www.nature.com/articles/s41...
showing that within the plant microbiota, cross-feeding metabolites within the native community emerged as crucial predictors of community resistance, disproportionally favouring native species over invaders
www.nature.com/articles/s41...
MicroAgroBiome: a toolkit for exploring specialized metabolism and ecological interactions in rhizosphere microbiomes of cultivated crops url: academic.oup.com/nar/article/...
Validate User
academic.oup.com
November 22, 2025 at 5:58 PM
MicroAgroBiome: a toolkit for exploring specialized metabolism and ecological interactions in rhizosphere microbiomes of cultivated crops url: academic.oup.com/nar/article/...
Fruit function beyond dispersal: effect of fruit decomposition on the plant microbiome assembly - Hoefle - New Phytologist - Wiley Online Library nph.onlinelibrary.wiley.com/doi/10.1111/...
nph.onlinelibrary.wiley.com
November 20, 2025 at 10:27 AM
Fruit function beyond dispersal: effect of fruit decomposition on the plant microbiome assembly - Hoefle - New Phytologist - Wiley Online Library nph.onlinelibrary.wiley.com/doi/10.1111/...
Emerging crops and plant growth-promoting bacteria (PGPB): a synergistic approach to climate-resilient agriculture
microbiomejournal.biomedcentral.com/articles/10....
microbiomejournal.biomedcentral.com/articles/10....
Emerging crops and plant growth-promoting bacteria (PGPB): a synergistic approach to climate-resilient agriculture - Microbiome
This review highlights the benefits of mutualistic plant–microbe interactions in enhancing the resilience of emergent crops and underlies the potential of these crops as valuable resources for explori...
microbiomejournal.biomedcentral.com
November 13, 2025 at 10:54 AM
Emerging crops and plant growth-promoting bacteria (PGPB): a synergistic approach to climate-resilient agriculture
microbiomejournal.biomedcentral.com/articles/10....
microbiomejournal.biomedcentral.com/articles/10....
Les étonnants pouvoirs du microbiote végétal
lejournal.cnrs.fr/articles/les...
lejournal.cnrs.fr/articles/les...
Les étonnants pouvoirs du microbiote végétal
Le microbiote des plantes ? L’holobionte végétal ? Des concepts méconnus, mais cruciaux pour la santé des plantes et l’agriculture durable. Explications avec l’écologue Philippe Vandenkoornhuyse, répu...
lejournal.cnrs.fr
November 9, 2025 at 12:41 PM
Les étonnants pouvoirs du microbiote végétal
lejournal.cnrs.fr/articles/les...
lejournal.cnrs.fr/articles/les...
Epigenetic landscape underlying plant-microbiome chemical communication url: academic.oup.com/ismej/articl...
Validate User
academic.oup.com
November 6, 2025 at 10:52 AM
Epigenetic landscape underlying plant-microbiome chemical communication url: academic.oup.com/ismej/articl...
Localized glutamine leakage drives the spatial structure of root microbial colonization | Science www.science.org/doi/10.1126/...
Localized glutamine leakage drives the spatial structure of root microbial colonization
Plant roots release exudates to encourage microbiome assembly, which influences the function and stress resilience of plants. How specific exudates drive spatial colonization patterns remains largely ...
www.science.org
November 5, 2025 at 7:01 PM
Localized glutamine leakage drives the spatial structure of root microbial colonization | Science www.science.org/doi/10.1126/...
The evolutionary and ecological consequences of cooperation | The American Naturalist: Vol 0, No ja www.journals.uchicago.edu/doi/10.1086/...
The evolutionary and ecological consequences of cooperation | The American Naturalist: Vol 0, No ja
www.journals.uchicago.edu
November 5, 2025 at 10:37 AM
The evolutionary and ecological consequences of cooperation | The American Naturalist: Vol 0, No ja www.journals.uchicago.edu/doi/10.1086/...
Reposted by Philippe Vandenkoornhuyse
BIG ANNOUNCEMENT📣: I haven’t been this excited to be part of something new in 15 years… Thrilled to reveal the passion project I’ve been working on for the past year and a half!🙀🥳 (thread 👇)
October 15, 2025 at 12:22 PM
BIG ANNOUNCEMENT📣: I haven’t been this excited to be part of something new in 15 years… Thrilled to reveal the passion project I’ve been working on for the past year and a half!🙀🥳 (thread 👇)
Reposted by Philippe Vandenkoornhuyse
Here’s how: qedscience.com
q.e.d Science
Critical Thinking AI for constructive criticism and science evaluation
qedscience.com
October 26, 2025 at 1:10 PM
Here’s how: qedscience.com
Our new paper about microbial single cell genome analyses is out !
besjournals.onlinelibrary.wiley.com/doi/10.1111/...
besjournals.onlinelibrary.wiley.com/doi/10.1111/...
besjournals.onlinelibrary.wiley.com
October 25, 2025 at 4:02 PM
Our new paper about microbial single cell genome analyses is out !
besjournals.onlinelibrary.wiley.com/doi/10.1111/...
besjournals.onlinelibrary.wiley.com/doi/10.1111/...
Plant–fungal interactions: A taste for sugars that shapes soil nutrient cycling: Current Biology www.cell.com/current-biol...
Plant–fungal interactions: A taste for sugars that shapes soil nutrient cycling
A newly identified sugar transporter in the plant-beneficial soil fungus Gongronella
butleri directs plant sucrose to microbial partners. Silencing this transporter reshapes
soil microbial communities...
www.cell.com
October 24, 2025 at 12:21 PM
Plant–fungal interactions: A taste for sugars that shapes soil nutrient cycling: Current Biology www.cell.com/current-biol...
Quantitative genetics of microbiome-mediated traits url: academic.oup.com/evolut/artic...
Quantitative genetics of microbiome-mediated traits
Microbiomes, the complex communities of microorganisms associated with multicellular hosts, play a vital role in shaping host traits and fitness. But how d
academic.oup.com
October 13, 2025 at 10:55 AM
Quantitative genetics of microbiome-mediated traits url: academic.oup.com/evolut/artic...