Wei Shen 沈 伟
@shenwei356.bsky.social
Associate professor of Bioinformatics at Chongqing Medical University, China. Lab: https://mbio.info, Personal: https://shenwei.me, https://x.com/shenwei356
Thrilled to finally debut my lab site🎉: mbio.info — which stands for Microbial Bioinformatics, a domain I purchased 9 years ago and has been waiting for this moment ever since!"
March 24, 2025 at 8:27 AM
Thrilled to finally debut my lab site🎉: mbio.info — which stands for Microbial Bioinformatics, a domain I purchased 9 years ago and has been waiting for this moment ever since!"
We've indexed about 1/50 out of 27 million samples, but the index is big (13 TiB, the whole would be 600TiB). Aligning a gene takes a few minutes on a single machine with 48 threads.
A better way might be indexing only microbial/metagenomic samples.
A better way might be indexing only microbial/metagenomic samples.
December 19, 2024 at 9:32 AM
We've indexed about 1/50 out of 27 million samples, but the index is big (13 TiB, the whole would be 600TiB). Aligning a gene takes a few minutes on a single machine with 48 threads.
A better way might be indexing only microbial/metagenomic samples.
A better way might be indexing only microbial/metagenomic samples.
We're thrilled to introduce LexicMap v0.5.0🎉
It's more accurate and slightly faster!
LexicMap has helped some scientists align genes and plasmids in AllTheBacteria and GenBank, each has > 2 million prokaryotic genomes!
We'll provide an index for ATB on AWS later.
github.com/shenwei356/L...
It's more accurate and slightly faster!
LexicMap has helped some scientists align genes and plasmids in AllTheBacteria and GenBank, each has > 2 million prokaryotic genomes!
We'll provide an index for ATB on AWS later.
github.com/shenwei356/L...
December 19, 2024 at 9:32 AM
We're thrilled to introduce LexicMap v0.5.0🎉
It's more accurate and slightly faster!
LexicMap has helped some scientists align genes and plasmids in AllTheBacteria and GenBank, each has > 2 million prokaryotic genomes!
We'll provide an index for ATB on AWS later.
github.com/shenwei356/L...
It's more accurate and slightly faster!
LexicMap has helped some scientists align genes and plasmids in AllTheBacteria and GenBank, each has > 2 million prokaryotic genomes!
We'll provide an index for ATB on AWS later.
github.com/shenwei356/L...
Is everyone moving to blue sky?
November 13, 2024 at 11:19 AM
Is everyone moving to blue sky?