Jens Zentgraf
@rorak.bsky.social
Cleanifier is a fast and memory-frugal tool to remove host contamination from microbial sequence data.
We build a pangenome gapped k-mer index using a probabilistic Cuckoo filter (
doi.org/10.48550/arX..., @Alenex 2026) for low memory requirements and fast queries.
We build a pangenome gapped k-mer index using a probabilistic Cuckoo filter (
doi.org/10.48550/arX..., @Alenex 2026) for low memory requirements and fast queries.
November 27, 2025 at 11:27 AM
Cleanifier is a fast and memory-frugal tool to remove host contamination from microbial sequence data.
We build a pangenome gapped k-mer index using a probabilistic Cuckoo filter (
doi.org/10.48550/arX..., @Alenex 2026) for low memory requirements and fast queries.
We build a pangenome gapped k-mer index using a probabilistic Cuckoo filter (
doi.org/10.48550/arX..., @Alenex 2026) for low memory requirements and fast queries.