OME
@openmicroscopy.org
OME is a consortium of universities, research labs, industry and developers producing open-source software and format standards for microscopy data.
https://www.openmicroscopy.org/
https://www.openmicroscopy.org/
Idr0173: Released ahead of its publication - Early Parkinson’s disease is defined by α-synuclein oligomer-driven aggregation susceptible cells by Breiter et al. Images in idr0173 are OME-Zarrs converted by the submitter.
idr.openmicroscopy.org/search/?quer...
idr.openmicroscopy.org/search/?quer...
November 21, 2025 at 10:18 AM
Idr0173: Released ahead of its publication - Early Parkinson’s disease is defined by α-synuclein oligomer-driven aggregation susceptible cells by Breiter et al. Images in idr0173 are OME-Zarrs converted by the submitter.
idr.openmicroscopy.org/search/?quer...
idr.openmicroscopy.org/search/?quer...
Idr0168: Prediction of protein subcellular localization in single cells from www.nature.com/articles/s41... by Zhang et al. Images in idr0168 are OME-Zarrs converted by the submitter.
idr.openmicroscopy.org/search/?quer...
idr.openmicroscopy.org/search/?quer...
November 21, 2025 at 10:18 AM
Idr0168: Prediction of protein subcellular localization in single cells from www.nature.com/articles/s41... by Zhang et al. Images in idr0168 are OME-Zarrs converted by the submitter.
idr.openmicroscopy.org/search/?quer...
idr.openmicroscopy.org/search/?quer...
BioFile Finder allows the browsing of image thumbnails which enables launching of images in full view via a range of image viewers. We hope this is useful!
August 6, 2025 at 4:28 PM
BioFile Finder allows the browsing of image thumbnails which enables launching of images in full view via a range of image viewers. We hope this is useful!
Example idr0170 image shown in OME-NGFF-Validator: ome.github.io/ome-ngff-val...
August 6, 2025 at 4:28 PM
Example idr0170 image shown in OME-NGFF-Validator: ome.github.io/ome-ngff-val...
Idr0170: Released ahead of its publication - Imaging Mass Cytometry Dataset of Small-Cell Lung Cancer tumors and tumor microenvironments by Rose et al. Images in idr0170 are OME-Zarrs converted by the submitter.
idr.openmicroscopy.org/search/?quer...
idr.openmicroscopy.org/search/?quer...
August 6, 2025 at 4:28 PM
Idr0170: Released ahead of its publication - Imaging Mass Cytometry Dataset of Small-Cell Lung Cancer tumors and tumor microenvironments by Rose et al. Images in idr0170 are OME-Zarrs converted by the submitter.
idr.openmicroscopy.org/search/?quer...
idr.openmicroscopy.org/search/?quer...
New landing pages have landed for every study in the Image Data Resource (IDR)!
Now, you can easily see clear details of the study - including how to download the data!
To access the landing page for a study, just click on its thumbnail from the homepage (idr.openmicroscopy.org).
Now, you can easily see clear details of the study - including how to download the data!
To access the landing page for a study, just click on its thumbnail from the homepage (idr.openmicroscopy.org).
July 25, 2025 at 9:03 AM
New landing pages have landed for every study in the Image Data Resource (IDR)!
Now, you can easily see clear details of the study - including how to download the data!
To access the landing page for a study, just click on its thumbnail from the homepage (idr.openmicroscopy.org).
Now, you can easily see clear details of the study - including how to download the data!
To access the landing page for a study, just click on its thumbnail from the homepage (idr.openmicroscopy.org).
New study released in the Image Data Resource (IDR, idr.openmicroscopy.org) today!
An embryonic patterning study from elifesciences.org/articles/78902 by Clark et al.
idr.openmicroscopy.org/search/?quer...
An embryonic patterning study from elifesciences.org/articles/78902 by Clark et al.
idr.openmicroscopy.org/search/?quer...
July 10, 2025 at 3:23 PM
New study released in the Image Data Resource (IDR, idr.openmicroscopy.org) today!
An embryonic patterning study from elifesciences.org/articles/78902 by Clark et al.
idr.openmicroscopy.org/search/?quer...
An embryonic patterning study from elifesciences.org/articles/78902 by Clark et al.
idr.openmicroscopy.org/search/?quer...
The #globalbioimaging couse at IISER Pune continued with an intense and well-received OMERO workshop part 1. The parts 2 and 3 of the OMERO workshoop to come tomorrow.
June 19, 2025 at 12:48 PM
The #globalbioimaging couse at IISER Pune continued with an intense and well-received OMERO workshop part 1. The parts 2 and 3 of the OMERO workshoop to come tomorrow.
On the #globalbioimaging course globalbioimaging.org/internationa... at IISER Pune, India, the discussions go on after the talk about Microscopy Facility Data Management strategies.
June 18, 2025 at 1:12 PM
On the #globalbioimaging course globalbioimaging.org/internationa... at IISER Pune, India, the discussions go on after the talk about Microscopy Facility Data Management strategies.
On #ELMI2025 an ad-hoc Question&Answer session on OMERO went very well, lively discussion with lot of tips on finding the optimal path to successful OMERO adoption in an Institution.
June 4, 2025 at 10:15 AM
On #ELMI2025 an ad-hoc Question&Answer session on OMERO went very well, lively discussion with lot of tips on finding the optimal path to successful OMERO adoption in an Institution.
3. Gene expression data from onlinelibrary.wiley.com/doi/10.1111/... by Alzu'bi et al.
idr.openmicroscopy.org/search/?quer...
idr.openmicroscopy.org/search/?quer...
May 9, 2025 at 3:30 PM
3. Gene expression data from onlinelibrary.wiley.com/doi/10.1111/... by Alzu'bi et al.
idr.openmicroscopy.org/search/?quer...
idr.openmicroscopy.org/search/?quer...
2. A morphology and secretome map of pyroptosis from the recently published www.molbiolcell.org/doi/10.1091/... by Lippincott et al.
idr.openmicroscopy.org/search/?quer...
idr.openmicroscopy.org/search/?quer...
May 9, 2025 at 3:30 PM
2. A morphology and secretome map of pyroptosis from the recently published www.molbiolcell.org/doi/10.1091/... by Lippincott et al.
idr.openmicroscopy.org/search/?quer...
idr.openmicroscopy.org/search/?quer...
Take a look at the three new studies released in the Image Data Resource (IDR, idr.openmicroscopy.org).
1. 3D-SIM data from www.nature.com/articles/s41... by Szabo et al.
idr.openmicroscopy.org/search/?quer...
1. 3D-SIM data from www.nature.com/articles/s41... by Szabo et al.
idr.openmicroscopy.org/search/?quer...
May 9, 2025 at 3:30 PM
Take a look at the three new studies released in the Image Data Resource (IDR, idr.openmicroscopy.org).
1. 3D-SIM data from www.nature.com/articles/s41... by Szabo et al.
idr.openmicroscopy.org/search/?quer...
1. 3D-SIM data from www.nature.com/articles/s41... by Szabo et al.
idr.openmicroscopy.org/search/?quer...
2. Large-scale hyperspectral #electronmicroscopy data from www.nature.com/articles/s44... by Duinkerken et al.
idr.openmicroscopy.org/search/?quer...
idr.openmicroscopy.org/search/?quer...
February 21, 2025 at 3:37 PM
2. Large-scale hyperspectral #electronmicroscopy data from www.nature.com/articles/s44... by Duinkerken et al.
idr.openmicroscopy.org/search/?quer...
idr.openmicroscopy.org/search/?quer...
Take a look at the two new studies released in the Image Data Resource (IDR, idr.openmicroscopy.org).
1. Light sheet fluorescence microscopy of Tribolium castaneum embryos from journals.biologists.com/dev/article/... by Strobl et al.
idr.openmicroscopy.org/search/?quer...
1. Light sheet fluorescence microscopy of Tribolium castaneum embryos from journals.biologists.com/dev/article/... by Strobl et al.
idr.openmicroscopy.org/search/?quer...
February 21, 2025 at 3:36 PM
Take a look at the two new studies released in the Image Data Resource (IDR, idr.openmicroscopy.org).
1. Light sheet fluorescence microscopy of Tribolium castaneum embryos from journals.biologists.com/dev/article/... by Strobl et al.
idr.openmicroscopy.org/search/?quer...
1. Light sheet fluorescence microscopy of Tribolium castaneum embryos from journals.biologists.com/dev/article/... by Strobl et al.
idr.openmicroscopy.org/search/?quer...
The one-day OMERO workshop given as a part of the Imaging course organized by CEITEC - Central European Institute of Technology, Brno, just ended. Very intesive workshop with lively discussions about IDR metadata and OMERO.figure.
December 6, 2024 at 4:38 PM
The one-day OMERO workshop given as a part of the Imaging course organized by CEITEC - Central European Institute of Technology, Brno, just ended. Very intesive workshop with lively discussions about IDR metadata and OMERO.figure.
The recent OMERO.server 5.6.14 release included a bunch of new Look-up tables listed at github.com/ome/openmicr... to add to a growling list!
Thanks to Tom Boissonnet and @gerbi.bsky.social
Thanks to Tom Boissonnet and @gerbi.bsky.social
November 27, 2024 at 11:10 AM
The recent OMERO.server 5.6.14 release included a bunch of new Look-up tables listed at github.com/ome/openmicr... to add to a growling list!
Thanks to Tom Boissonnet and @gerbi.bsky.social
Thanks to Tom Boissonnet and @gerbi.bsky.social