Keith Robison
@omicsomics.bsky.social
Computational biologist & blogger
How to run GenomeCheck:
- Instantly on Streamlit Community Cloud - lnkd.in/erSruXxt
- Locally via Docker - meadm/genomecheck:latest
- By cloning the GitHub repo and creating an environment from the provided environment.yml file
- Instantly on Streamlit Community Cloud - lnkd.in/erSruXxt
- Locally via Docker - meadm/genomecheck:latest
- By cloning the GitHub repo and creating an environment from the provided environment.yml file
LinkedIn
This link will take you to a page that’s not on LinkedIn
lnkd.in
October 30, 2025 at 4:23 PM
How to run GenomeCheck:
- Instantly on Streamlit Community Cloud - lnkd.in/erSruXxt
- Locally via Docker - meadm/genomecheck:latest
- By cloning the GitHub repo and creating an environment from the provided environment.yml file
- Instantly on Streamlit Community Cloud - lnkd.in/erSruXxt
- Locally via Docker - meadm/genomecheck:latest
- By cloning the GitHub repo and creating an environment from the provided environment.yml file
What GenomeCheck does:
- Runs basic QC and summary stats
- Optionally runs BUSCO to assess genome completeness
- Optionally runs fastANI to estimate pairwise Average Nucleotide Identity between uploaded genomes, helping flag unexpected relationships
- Runs basic QC and summary stats
- Optionally runs BUSCO to assess genome completeness
- Optionally runs fastANI to estimate pairwise Average Nucleotide Identity between uploaded genomes, helping flag unexpected relationships
October 30, 2025 at 4:23 PM
What GenomeCheck does:
- Runs basic QC and summary stats
- Optionally runs BUSCO to assess genome completeness
- Optionally runs fastANI to estimate pairwise Average Nucleotide Identity between uploaded genomes, helping flag unexpected relationships
- Runs basic QC and summary stats
- Optionally runs BUSCO to assess genome completeness
- Optionally runs fastANI to estimate pairwise Average Nucleotide Identity between uploaded genomes, helping flag unexpected relationships
I can’t DM you here - not sure what security model BS is using
October 17, 2025 at 8:15 PM
I can’t DM you here - not sure what security model BS is using
Reposted by Keith Robison
Long-form complaint about the #ASHG25 event info system from @omicsomics.bsky.social omicsomics.blogspot.com/2025/10/ashg...
ASHG Posters: The Agony and The Ecstasy
ASHG is a huge meeting, probably the second largest I've ever attended after ASCO. ASBMB is similar in size perhaps, though I think a hair ...
omicsomics.blogspot.com
October 15, 2025 at 8:14 PM
Long-form complaint about the #ASHG25 event info system from @omicsomics.bsky.social omicsomics.blogspot.com/2025/10/ashg...
Let’s!! I’m wandering around today
October 17, 2025 at 6:11 PM
Let’s!! I’m wandering around today
Reposted by Keith Robison
The link to download all abstracts is here. It's always a little well hidden. In previous years it was somewhere like a "Resources" page where no one would ever think to look. #ASHG25 www.ashg.org/wp-content/u...
October 15, 2025 at 8:13 PM
The link to download all abstracts is here. It's always a little well hidden. In previous years it was somewhere like a "Resources" page where no one would ever think to look. #ASHG25 www.ashg.org/wp-content/u...
$750K gets you both boxes
October 17, 2025 at 6:09 PM
$750K gets you both boxes
Thanks for the tag advice!
I have a longer bit on the posters being drafted - the one day bit is frustrating!
I have a longer bit on the posters being drafted - the one day bit is frustrating!
October 14, 2025 at 5:14 PM
Thanks for the tag advice!
I have a longer bit on the posters being drafted - the one day bit is frustrating!
I have a longer bit on the posters being drafted - the one day bit is frustrating!
